Miyakogusa Predicted Gene

Lj3g3v2809750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2809750.1 Non Chatacterized Hit- tr|Q9FLS3|Q9FLS3_ARATH
Putative uncharacterized protein OS=Arabidopsis
thalia,57.14,9e-19,MITOCHONDRIA ASSOCIATED GRANULOCYTE MACROPHAGE CSF
SIGNALING MOLECULE,Protein Transporter, Pam16; Pa,CUFF.44696.1
         (96 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59280.1 | Symbols: TXR1 | Protein Transporter, Pam16 | chr3:...   132   6e-32
AT5G61880.2 | Symbols:  | Protein Transporter, Pam16 | chr5:2485...   114   1e-26
AT5G61880.1 | Symbols:  | Protein Transporter, Pam16 | chr5:2485...   114   1e-26

>AT3G59280.1 | Symbols: TXR1 | Protein Transporter, Pam16 |
          chr3:21909266-21910519 REVERSE LENGTH=116
          Length = 116

 Score =  132 bits (331), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 66/96 (68%), Positives = 77/96 (80%)

Query: 1  MATRILANLIVMGGGMFAKAVVKAYHEALAKALQNGVAQETLQNTVRGARKMMTEQEARQ 60
          MA R+LANLIVMG G+  +AV +AY +ALA A ++GVAQE +QN VR A K +TEQEARQ
Sbjct: 1  MAGRLLANLIVMGSGIIGRAVFQAYRQALANASKSGVAQEAMQNGVRQAGKAITEQEARQ 60

Query: 61 ILGVTEGTPWGEILQKYDNLFEKNSEKGSFYLQSKV 96
          ILGVTE T W EILQKYD LFE N++ GSFYLQSKV
Sbjct: 61 ILGVTEKTSWEEILQKYDKLFENNAKAGSFYLQSKV 96


>AT5G61880.2 | Symbols:  | Protein Transporter, Pam16 |
          chr5:24850598-24851512 FORWARD LENGTH=113
          Length = 113

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/96 (58%), Positives = 70/96 (72%), Gaps = 2/96 (2%)

Query: 1  MATRILANLIVMGGGMFAKAVVKAYHEALAKALQNGVAQETLQNTVRGARKMMTEQEARQ 60
          MA R+LA++IVMG G+ A+A  +AY +ALA A + GVA E  Q   RG    + E EARQ
Sbjct: 1  MAARVLASVIVMGSGIIARACTQAYRQALANASKTGVAHEATQTIKRGL--TIGEAEARQ 58

Query: 61 ILGVTEGTPWGEILQKYDNLFEKNSEKGSFYLQSKV 96
          ILGVTE + W EIL+KYD LFE+N++ GSFYLQSKV
Sbjct: 59 ILGVTEKSSWDEILKKYDTLFERNAQNGSFYLQSKV 94


>AT5G61880.1 | Symbols:  | Protein Transporter, Pam16 |
          chr5:24850598-24851512 FORWARD LENGTH=113
          Length = 113

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/96 (58%), Positives = 70/96 (72%), Gaps = 2/96 (2%)

Query: 1  MATRILANLIVMGGGMFAKAVVKAYHEALAKALQNGVAQETLQNTVRGARKMMTEQEARQ 60
          MA R+LA++IVMG G+ A+A  +AY +ALA A + GVA E  Q   RG    + E EARQ
Sbjct: 1  MAARVLASVIVMGSGIIARACTQAYRQALANASKTGVAHEATQTIKRGL--TIGEAEARQ 58

Query: 61 ILGVTEGTPWGEILQKYDNLFEKNSEKGSFYLQSKV 96
          ILGVTE + W EIL+KYD LFE+N++ GSFYLQSKV
Sbjct: 59 ILGVTEKSSWDEILKKYDTLFERNAQNGSFYLQSKV 94