Miyakogusa Predicted Gene

Lj3g3v2809210.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2809210.1 tr|F2E1F5|F2E1F5_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,36.25,4e-18,SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; seg,NULL; DUF1421,Protein of
unknown function DUF14,CUFF.44732.1
         (281 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G28300.2 | Symbols:  | Protein of unknown function (DUF1421) ...   102   4e-22
AT4G28300.1 | Symbols:  | Protein of unknown function (DUF1421) ...   102   4e-22
AT5G14540.1 | Symbols:  | Protein of unknown function (DUF1421) ...    48   8e-06

>AT4G28300.2 | Symbols:  | Protein of unknown function (DUF1421) |
           chr4:14015414-14016823 FORWARD LENGTH=438
          Length = 438

 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/197 (44%), Positives = 104/197 (52%), Gaps = 30/197 (15%)

Query: 95  ANPPPKETLPNSLPMQMQYSGIPPSGSGRGAATPYGYNGTGRSTVAQQPPPQQIKSSFPA 154
            N PP E+LP+S+ MQ  YSG PP  S +     YGY          Q    Q K S+  
Sbjct: 262 GNQPPVESLPSSMQMQSPYSG-PPQQSMQA----YGYGAAPPPQAPPQ----QTKMSYSP 312

Query: 155 QPGDMYGTHATPPPASSYMTYDSDGGR------AHYTAQHSSHYAQA----GYPPTSASL 204
           Q GD Y   + PPP S Y     +GGR           Q  +HY Q     GY       
Sbjct: 313 QTGDGY-LPSGPPPPSGYANAMYEGGRMQYPPPQPQQQQQQAHYLQGPQGGGY------- 364

Query: 205 QNPAPHNLMVRNPSQPPQFTRSHPYNDLIEKLVNMGFRGDHVGSVIQRMEETGQPVDFNS 264
            +P PH     N   PP   RS  Y +LIEKLV+MGFRGDHV +VIQRMEE+GQP+DFN+
Sbjct: 365 -SPQPHQAGGGNIGAPP-VLRSK-YGELIEKLVSMGFRGDHVMAVIQRMEESGQPIDFNT 421

Query: 265 LLDRLNVLSSVGPQRGW 281
           LLDRL+  SS GP RGW
Sbjct: 422 LLDRLSGQSSGGPPRGW 438


>AT4G28300.1 | Symbols:  | Protein of unknown function (DUF1421) |
           chr4:14014860-14016823 FORWARD LENGTH=496
          Length = 496

 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/197 (44%), Positives = 104/197 (52%), Gaps = 30/197 (15%)

Query: 95  ANPPPKETLPNSLPMQMQYSGIPPSGSGRGAATPYGYNGTGRSTVAQQPPPQQIKSSFPA 154
            N PP E+LP+S+ MQ  YSG PP  S +     YGY          Q    Q K S+  
Sbjct: 320 GNQPPVESLPSSMQMQSPYSG-PPQQSMQA----YGYGAAPPPQAPPQ----QTKMSYSP 370

Query: 155 QPGDMYGTHATPPPASSYMTYDSDGGR------AHYTAQHSSHYAQA----GYPPTSASL 204
           Q GD Y   + PPP S Y     +GGR           Q  +HY Q     GY       
Sbjct: 371 QTGDGY-LPSGPPPPSGYANAMYEGGRMQYPPPQPQQQQQQAHYLQGPQGGGY------- 422

Query: 205 QNPAPHNLMVRNPSQPPQFTRSHPYNDLIEKLVNMGFRGDHVGSVIQRMEETGQPVDFNS 264
            +P PH     N   PP   RS  Y +LIEKLV+MGFRGDHV +VIQRMEE+GQP+DFN+
Sbjct: 423 -SPQPHQAGGGNIGAPP-VLRSK-YGELIEKLVSMGFRGDHVMAVIQRMEESGQPIDFNT 479

Query: 265 LLDRLNVLSSVGPQRGW 281
           LLDRL+  SS GP RGW
Sbjct: 480 LLDRLSGQSSGGPPRGW 496


>AT5G14540.1 | Symbols:  | Protein of unknown function (DUF1421) |
           chr5:4687333-4689624 REVERSE LENGTH=547
          Length = 547

 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 228 PYNDLIEKLVNMGFRGDHVGSVIQRMEETGQPVDFNSLLDRL 269
           P +D+I+K+V+MGF  D V   ++ + E GQ VD N +LD+L
Sbjct: 482 PVDDVIDKVVSMGFPRDQVRGTVRTLTENGQAVDLNVVLDKL 523