Miyakogusa Predicted Gene

Lj3g3v2785700.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2785700.1 Non Chatacterized Hit- tr|E1ZQ67|E1ZQ67_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,41.35,3e-17,seg,NULL; PSII_Pbs27,Photosystem II
Pbs27,CUFF.44639.1
         (151 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03600.1 | Symbols: PSB27 | photosystem II family protein | c...   146   4e-36

>AT1G03600.1 | Symbols: PSB27 | photosystem II family protein |
           chr1:898916-899440 FORWARD LENGTH=174
          Length = 174

 Score =  146 bits (369), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 67/94 (71%), Positives = 78/94 (82%)

Query: 58  VINKVRTTITMDKNDPNVADAVADLRDSSNSWVAKYRKEKALLARVSFRDVYSALNAVSG 117
           VI+KVR+T++M K DPNVADAVA+LR++SNSWVAKYRKEKALL + SFRD+YSALNAVSG
Sbjct: 81  VISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEKALLGKASFRDIYSALNAVSG 140

Query: 118 HYISFGPTAPIPAKRRARIXXXXXXXXXXXXRGR 151
           HY+SFGPTAPIPAKR+ARI            RGR
Sbjct: 141 HYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174