Miyakogusa Predicted Gene

Lj3g3v2780580.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2780580.1 CUFF.44622.1
         (274 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G61170.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    53   3e-07

>AT1G61170.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN: N-terminal
           protein myristoylation; LOCATED IN: cellular_component
           unknown; EXPRESSED IN: 19 plant structures; EXPRESSED
           DURING: 12 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT1G11125.1);
           Has 54 Blast hits to 54 proteins in 15 species: Archae -
           0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 34;
           Viruses - 1; Other Eukaryotes - 2 (source: NCBI BLink).
           | chr1:22549718-22550473 FORWARD LENGTH=251
          Length = 251

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 52/115 (45%), Gaps = 15/115 (13%)

Query: 170 NSPARVTEPPPAKKVLMGSGSVRRRESGQVRRDPGEDSGRRPGSPSFTRTV--------- 220
           N P R T+  P K+    +G+      G   RDPGE SGRR  SP+  R+V         
Sbjct: 142 NYPTRRTDQSPRKR---NNGTCNGARYGSGVRDPGERSGRRSRSPATNRSVMDSNQSSRV 198

Query: 221 GAGTSRRQLRPPGGAGRRLLPMXXXXXXXXXXXXXLM-EESLENPHVSLECFIFL 274
           G   +R+  + PG    RL P                 EE LENP VSLECFIFL
Sbjct: 199 GGAKTRKNNQSPGRV--RLDPAKNGLDQQQHQNYGYTTEELLENPLVSLECFIFL 251