Miyakogusa Predicted Gene

Lj3g3v2780570.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2780570.1 Non Chatacterized Hit- tr|I3T6K4|I3T6K4_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,88.27,0,Elongator protein 3, MiaB family, Radical SA,Elongator
protein 3/MiaB/NifB; no description,Aldolase-,CUFF.44628.1
         (380 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20860.1 | Symbols: LIP1 | lipoic acid synthase 1 | chr2:8979...   574   e-164
AT5G08415.1 | Symbols:  | Radical SAM superfamily protein | chr5...   362   e-100

>AT2G20860.1 | Symbols: LIP1 | lipoic acid synthase 1 |
           chr2:8979636-8980983 FORWARD LENGTH=374
          Length = 374

 Score =  574 bits (1479), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 274/328 (83%), Positives = 292/328 (89%), Gaps = 3/328 (0%)

Query: 48  ESPSLSDFIALKSGDGYSVEVGTXXXXXXXXXWMKESIPGGEKYVQIKKKLRELKLHTVC 107
           ESPSL+DFI    GD YSVEVGT         WMKESIPGGE+YVQIKKKLR+LKLHTVC
Sbjct: 47  ESPSLTDFI---HGDTYSVEVGTKKKPLPKPKWMKESIPGGERYVQIKKKLRDLKLHTVC 103

Query: 108 EEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRTXXXXXXXXXTNVAEA 167
           EEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRT          NVAEA
Sbjct: 104 EEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPNEPNNVAEA 163

Query: 168 IVAWGLDYVVITSVDRDDLPDQGSGHFTETVQKMKALKPSMLIEALVPDFRGDANCVEKV 227
           I +WG+DYVVITSVDRDDLPDQGSGHF ETVQ++K LKP MLIEALVPDFRGD  CVEKV
Sbjct: 164 IASWGVDYVVITSVDRDDLPDQGSGHFAETVQRLKFLKPEMLIEALVPDFRGDGGCVEKV 223

Query: 228 SKSGLDVFAHNIETVEELQSVVRDHRANFKQSLDVLMMAKDYAPAGTLTKTSIMLGCGET 287
           SKSGLDV AHNIETVEELQS VRDHRANFKQSLDVL MAK+YAPAGTLTKTS+MLGCGET
Sbjct: 224 SKSGLDVLAHNIETVEELQSFVRDHRANFKQSLDVLRMAKEYAPAGTLTKTSVMLGCGET 283

Query: 288 PDQVLKTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFEKYQTLGMEMGFRYVAS 347
           PDQV+KTMEKVRAAGVDVMTFGQYMRPSKRHMPV+EY+TP+AFE+Y+ LGMEMGFRYVAS
Sbjct: 284 PDQVVKTMEKVRAAGVDVMTFGQYMRPSKRHMPVAEYVTPDAFERYRLLGMEMGFRYVAS 343

Query: 348 GPMVRSSYKAGEFYIKSMIDSDRAASSS 375
           GPMVRSSYKAGE+YIKSMI++DR AS S
Sbjct: 344 GPMVRSSYKAGEYYIKSMIEADRVASPS 371


>AT5G08415.1 | Symbols:  | Radical SAM superfamily protein |
           chr5:2710983-2713101 REVERSE LENGTH=394
          Length = 394

 Score =  362 bits (930), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 165/296 (55%), Positives = 219/296 (73%), Gaps = 1/296 (0%)

Query: 80  WMKESIPGGEKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCT 139
           W+++  P GE++ ++K+ L  L L+TVCEEA+CPN+GECW+GG  G ATATIM+LGDTCT
Sbjct: 100 WLRQKAPQGERFQEVKESLSRLNLNTVCEEAQCPNIGECWNGGGDGVATATIMVLGDTCT 159

Query: 140 RGCRFCNVKTSRTXXXXXXXXXTNVAEAIVAWGLDYVVITSVDRDDLPDQGSGHFTETVQ 199
           RGCRFC VKTSR           N A+AI +WG+DY+VITSVDRDD+PD GSGHF +TV+
Sbjct: 160 RGCRFCAVKTSRNPPPPDPMEPENTAKAIASWGVDYIVITSVDRDDIPDGGSGHFAQTVK 219

Query: 200 KMKALKPSMLIEALVPDFRGDANCVEKVSKSGLDVFAHNIETVEELQSVVRDHRANFKQS 259
            MK  KP ++IE L  DFRGD   V+ +  SGLDVFAHN+ETV+ LQ +VRD RA ++QS
Sbjct: 220 AMKRHKPDIMIECLTSDFRGDLEAVDTLVHSGLDVFAHNVETVKRLQRLVRDPRAGYEQS 279

Query: 260 LDVLMMAKDYAPAGTLTKTSIMLGCGETPDQVLKTMEKVRAAGVDVMTFGQYMRPSKRHM 319
           + VL  AK   P G +TKTSIMLG GET +++ + M  +RA  VD++T GQY++P+  H+
Sbjct: 280 MSVLKHAKISKP-GMITKTSIMLGLGETDEELKEAMADLRAIDVDILTLGQYLQPTPLHL 338

Query: 320 PVSEYITPEAFEKYQTLGMEMGFRYVASGPMVRSSYKAGEFYIKSMIDSDRAASSS 375
            V EY+TPE F+ ++T G  +GFRYVASGP+VRSSY+AGE ++K+M+    + S S
Sbjct: 339 TVKEYVTPEKFDFWKTYGESIGFRYVASGPLVRSSYRAGELFVKTMVKESYSKSLS 394