Miyakogusa Predicted Gene

Lj3g3v2780540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2780540.1 Non Chatacterized Hit- tr|I1LWZ0|I1LWZ0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.53257 PE,88.12,0,no
description,NULL; Tryptophan synthase beta subunit-like PLP-dependent
enzymes,Tryptophan synthase,CUFF.44620.1
         (373 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G38530.1 | Symbols: TSBtype2 | tryptophan synthase beta type ...   514   e-146
AT4G27070.1 | Symbols: TSB2 | tryptophan synthase beta-subunit 2...    97   2e-20
AT5G54810.1 | Symbols: TSB1, TRPB, TRP2, ATTSB1 | tryptophan syn...    95   1e-19
AT5G28237.1 | Symbols:  | Pyridoxal-5'-phosphate-dependent enzym...    94   2e-19

>AT5G38530.1 | Symbols: TSBtype2 | tryptophan synthase beta type 2 |
           chr5:15424097-15426294 FORWARD LENGTH=506
          Length = 506

 Score =  514 bits (1325), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 247/324 (76%), Positives = 281/324 (86%), Gaps = 5/324 (1%)

Query: 43  RLSN--ACKVRATLDS--NRSI-DIPKQWYNLIADXXXXXXXXXXXXXXXXXKPEDLAPL 97
           R+SN  + +V+A L S  N+S+ +IPKQWYNL+AD                 KPEDLA L
Sbjct: 43  RVSNGSSLRVKAALRSTHNKSVVEIPKQWYNLVADLSVKPPPPLHPKTFEPIKPEDLAHL 102

Query: 98  FPDELIRQEVTSDRFIDIPDEVLDVYKLWRPTPLIRAKRLEKLLDTPARIYYKYEGVSPA 157
           FP+ELI+QE T +RFIDIP+EVL++YKLWRPTPLIRAKRLEKLL TPARIY+KYEG SPA
Sbjct: 103 FPNELIKQEATQERFIDIPEEVLEIYKLWRPTPLIRAKRLEKLLQTPARIYFKYEGGSPA 162

Query: 158 GSHKPNSAVPQAWYNLQEGIKNVVTETGAGQWGSALAFACSIFGLGCEVWQVRASYDSKP 217
           GSHKPN+AVPQA+YN +EG+KNVVTETGAGQWGS+LAFA S+FGL CEVWQV  SY +KP
Sbjct: 163 GSHKPNTAVPQAYYNAKEGVKNVVTETGAGQWGSSLAFASSLFGLDCEVWQVANSYHTKP 222

Query: 218 YRRLMMQTWGAKVHPSPSMITESGQRILQEDPSSPGSLGIAISEAVEVAAKNPDTKYCLG 277
           YRRLMMQTWGAKVHPSPS +TE+G+RIL+ DPSSPGSLGIAISEAVEVAA+N DTKYCLG
Sbjct: 223 YRRLMMQTWGAKVHPSPSDLTEAGRRILESDPSSPGSLGIAISEAVEVAARNEDTKYCLG 282

Query: 278 SVLNHVLLHQSVIGEECLKQMEAIGETPDVIIGCTGGGSNFAGLSFPFIREKLNKKINPV 337
           SVLNHVLLHQ++IGEEC++QME  GETPD+IIGCTGGGSNFAGLSFPFIREKL  KINPV
Sbjct: 283 SVLNHVLLHQTIIGEECIQQMENFGETPDLIIGCTGGGSNFAGLSFPFIREKLKGKINPV 342

Query: 338 IRAVEPAACPSLTKGVYAYDYGDT 361
           IRAVEP+ACPSLTKGVYAYD+GDT
Sbjct: 343 IRAVEPSACPSLTKGVYAYDFGDT 366


>AT4G27070.1 | Symbols: TSB2 | tryptophan synthase beta-subunit 2 |
           chr4:13586564-13588619 FORWARD LENGTH=475
          Length = 475

 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 109/228 (47%), Gaps = 31/228 (13%)

Query: 114 DIPDEVLDVYK--LWRPTPLIRAKRLEKLL-----DTPARIYYKYEGVSPAGSHKPNSAV 166
           D   E+ ++ K  + R +PL  A+RL +       + P  IY K E ++  G+HK N+AV
Sbjct: 117 DFQRELAEILKDYVGRESPLYFAERLTEHYRRENGEGPL-IYLKREDLNHTGAHKINNAV 175

Query: 167 PQAWYNLQEGIKNVVTETGAGQWGSALAFACSIFGLGCEVWQVRASYDSKPYRRLMMQTW 226
            QA    + G K ++ ETGAGQ G A A  C+ FGL C ++      + +      M+  
Sbjct: 176 AQALLAKRLGKKRIIAETGAGQHGVATATVCARFGLQCIIYMGAQDMERQALNVFRMRLL 235

Query: 227 GAKVHPSPSMITESGQRILQEDPSSPGSLGIAISEAVEVAAKNPD-TKYCLGSVLN---- 281
           GA+V         SG   L++          A SEA+     N + T Y LGSV      
Sbjct: 236 GAEVRG-----VHSGTATLKD----------ATSEAIRDWVTNVETTHYILGSVAGPHPY 280

Query: 282 --HVLLHQSVIGEECLKQ-MEAIGETPDVIIGCTGGGSNFAGLSFPFI 326
              V    +VIG+E  KQ ME  G  PDV++ C GGGSN  GL   F+
Sbjct: 281 PMMVRDFHAVIGKETRKQAMEKWGGKPDVLVACVGGGSNAMGLFHEFV 328


>AT5G54810.1 | Symbols: TSB1, TRPB, TRP2, ATTSB1 | tryptophan
           synthase beta-subunit 1 | chr5:22264805-22266738 REVERSE
           LENGTH=470
          Length = 470

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 109/230 (47%), Gaps = 31/230 (13%)

Query: 114 DIPDEVLDVYK--LWRPTPLIRAKRLEKLL-----DTPARIYYKYEGVSPAGSHKPNSAV 166
           D   E+  + K  + R +PL  A+RL +       + P  IY K E ++  G+HK N+AV
Sbjct: 112 DFQRELAGILKDYVGRESPLYFAERLTEHYRRENGEGPL-IYLKREDLNHTGAHKINNAV 170

Query: 167 PQAWYNLQEGIKNVVTETGAGQWGSALAFACSIFGLGCEVWQVRASYDSKPYRRLMMQTW 226
            QA    + G K ++ ETGAGQ G A A  C+ FGL C ++      + +      M+  
Sbjct: 171 AQALLAKRLGKKRIIAETGAGQHGVATATVCARFGLECIIYMGAQDMERQALNVFRMRLL 230

Query: 227 GAKVHPSPSMITESGQRILQEDPSSPGSLGIAISEAVEVAAKNPD-TKYCLGSVLN---- 281
           GA+V         SG   L++          A SEA+     N + T Y LGSV      
Sbjct: 231 GAEVRG-----VHSGTATLKD----------ATSEAIRDWVTNVETTHYILGSVAGPHPY 275

Query: 282 --HVLLHQSVIGEECLKQ-MEAIGETPDVIIGCTGGGSNFAGLSFPFIRE 328
              V    +VIG+E  KQ +E  G  PDV++ C GGGSN  GL   F+ +
Sbjct: 276 PMMVRDFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEFVND 325


>AT5G28237.1 | Symbols:  | Pyridoxal-5'-phosphate-dependent enzyme
           family protein | chr5:10207477-10213542 REVERSE
           LENGTH=465
          Length = 465

 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 106/220 (48%), Gaps = 33/220 (15%)

Query: 125 LWRPTPLIRAKRLEK-------LLDTPARIYYKYEGVSPAGSHKPNSAVPQAWYNLQEGI 177
           + R TPL  A+RL +        ++    IY K E +S  GSHK N+A+ QA  + + G 
Sbjct: 116 VGRETPLYFAERLTEHYKNIVPTIEGGPEIYLKREDLSHCGSHKINNALAQAMISRRLGC 175

Query: 178 KNVVTETGAGQWGSALAFACSIFGLGCEVWQVRASYDSKPYRRLMMQTWGAKVHPSPSMI 237
             VV  TGAGQ G A A AC+   L C V+   A  + + +  L M+  GA+V       
Sbjct: 176 SRVVAATGAGQHGVATAAACAKLSLECTVFMGAADIEKQSFNVLSMKLLGAQV------- 228

Query: 238 TESGQRILQEDPSSPGSLGIAISEAVEVAAKNPDTKYCL-GSVLN-H-----VLLHQSVI 290
                       S  G+   A SEA+    +N  T Y L G+V+  H     V   QSVI
Sbjct: 229 -----------ISVEGTFKDASSEAIRNWVENLYTTYYLSGTVVGPHPCPIIVREFQSVI 277

Query: 291 GEECLKQMEAI-GETPDVIIGCTGGGSNFAGLSFPFIREK 329
           G+E  +Q + + G  PDV++ C G GSN  GL   F+ ++
Sbjct: 278 GKETRRQAKQLWGGKPDVLVACVGSGSNALGLFHEFVGDE 317