Miyakogusa Predicted Gene

Lj3g3v2779500.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2779500.1 Non Chatacterized Hit- tr|G7L312|G7L312_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,52.34,1e-17,Translation proteins,Translation
elongation/initiation factor/Ribosomal, beta-barrel; Gar1,H/ACA
rib,CUFF.44617.1
         (704 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03530.1 | Symbols: ATNAF1, NAF1 | nuclear assembly factor 1 ...   196   5e-50

>AT1G03530.1 | Symbols: ATNAF1, NAF1 | nuclear assembly factor 1 |
           chr1:880638-883338 REVERSE LENGTH=801
          Length = 801

 Score =  196 bits (498), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 105/188 (55%), Positives = 128/188 (68%), Gaps = 17/188 (9%)

Query: 170 DDAG----RPVMSKNDDELEVLPWVPPVNVTLGPHHQMLPVGVVMSILGAQVIVEGVEKH 225
           DD G     P+ SKN  EL+ LP VPPV+VTL PHH  LPVGVV+S++ AQVIVEG+EKH
Sbjct: 346 DDLGLQTKEPIRSKN--ELKELPPVPPVDVTLEPHHATLPVGVVLSVMSAQVIVEGMEKH 403

Query: 226 DPLNEGSILWMTESRRPLGFIEEIFGPVEHPYYIVRYNSENEVPEGIRGGTLISFVPEFA 285
            PL EGSILW+TE R PLG ++EIFGPV+ PYYIVR+NSE+EVPEG+  GT +SFV +FA
Sbjct: 404 SPLTEGSILWITEKRTPLGLVDEIFGPVKCPYYIVRFNSESEVPEGVCQGTPVSFVADFA 463

Query: 286 NHVLRDEELYKKGYXXXXXXXXXX------XXXGKEAEYKRMQTMAKRGIQ-DQNPG--- 335
            H+L  +EL KKGY                    KEAEY+RMQ + KRG+  DQ  G   
Sbjct: 464 QHILNIKELQKKGYDASGDNDEEIPDELEFSDDEKEAEYRRMQKLEKRGMMSDQKTGNTR 523

Query: 336 -KRKNNRN 342
            K+K NR+
Sbjct: 524 NKKKKNRD 531