Miyakogusa Predicted Gene
- Lj3g3v2769440.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2769440.1 tr|B4FP84|B4FP84_MAIZE Tic20-like protein OS=Zea
mays PE=2 SV=1,32.26,9e-19,Tic20,Tic20-like protein;
seg,NULL,CUFF.44609.1
(273 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G03320.1 | Symbols: tic20-IV | translocon at the inner envelo... 227 6e-60
AT1G04940.1 | Symbols: TIC20 | translocon at the inner envelope ... 149 2e-36
AT1G04945.3 | Symbols: | HIT-type Zinc finger family protein | ... 137 6e-33
>AT4G03320.1 | Symbols: tic20-IV | translocon at the inner envelope
membrane of chloroplasts 20-IV | chr4:1464529-1465820
FORWARD LENGTH=284
Length = 284
Score = 227 bits (579), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 129/169 (76%)
Query: 104 RIPANSEKPEWWWRTLSCIPYLIALQMSATGFYLEPLLDKSRIFRSLLFYIPGVYNRLPQ 163
++P +E+PEWWWRTL+C+PYLI+LQ+S GFY++P L+K ++++IPG NR P
Sbjct: 114 KLPKIAERPEWWWRTLACVPYLISLQISDVGFYVQPFLEKHDAIGDMIYFIPGAINRWPT 173
Query: 164 WFPMLYCYLAIVIVVKNKDFPILFRFHVMMGMLLEIAMQIVWVTSNFMPLIHFKGTLGMY 223
WF M+YCYL + VVKNK+ P RFH+MMGMLLE A+Q++W TSNF PLIHFKG GMY
Sbjct: 174 WFFMVYCYLGYMWVVKNKELPHYLRFHMMMGMLLETALQVIWCTSNFFPLIHFKGRFGMY 233
Query: 224 YWAGVAVAYIVMMMHCIRCALLGTFVKIPLLSESAFLHSLFSLGGFQRP 272
YW + YI +++ CIRCAL G + +IP ++++A +H+LF+LGGFQRP
Sbjct: 234 YWMAIGFTYICLLLECIRCALAGVYAQIPFMTDAASIHTLFNLGGFQRP 282
>AT1G04940.1 | Symbols: TIC20 | translocon at the inner envelope
membrane of chloroplasts 20 | chr1:1399588-1400616
FORWARD LENGTH=274
Length = 274
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 113/186 (60%), Gaps = 15/186 (8%)
Query: 80 RVLMSRRRNSDIRGQAYIYHWSGFRIPANSEKPEWWWRTLSCIPYLIALQMS----ATGF 135
+ L++ R + D+ S FR P ++KP+WWWRTL+C+PYL+ L + T +
Sbjct: 96 KTLLTPRASKDVP--------SSFRFPPMTKKPQWWWRTLACLPYLMPLHETWMYAETAY 147
Query: 136 YLEPLLDKSRIFRSLLFYIPGVYNRLPQWFPMLYCYLAIVIVVKNKDFPILFRFHVMMGM 195
+L P L+ F L + G RLP WF M Y ++A + +V+ K++P FRFHV+MGM
Sbjct: 148 HLHPFLED---FEFLTYPFLGAIGRLPSWFLMAYFFVAYLGIVRRKEWPHFFRFHVVMGM 204
Query: 196 LLEIAMQIVWVTSNFMPLIHFKGTLGMYYWAGVAVAYIVMMMHCIRCALLGTFVKIPLLS 255
LLEIA+Q++ S +MPL + G GM++W VA AY+ ++ IRCAL G + IP +
Sbjct: 205 LLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAYLFTVLESIRCALAGMYADIPFVC 264
Query: 256 ESAFLH 261
++A++
Sbjct: 265 DAAYIQ 270
>AT1G04945.3 | Symbols: | HIT-type Zinc finger family protein |
chr1:1399588-1402651 FORWARD LENGTH=644
Length = 644
Score = 137 bits (346), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 105/175 (60%), Gaps = 15/175 (8%)
Query: 80 RVLMSRRRNSDIRGQAYIYHWSGFRIPANSEKPEWWWRTLSCIPYLIALQMS----ATGF 135
+ L++ R + D+ S FR P ++KP+WWWRTL+C+PYL+ L + T +
Sbjct: 96 KTLLTPRASKDVP--------SSFRFPPMTKKPQWWWRTLACLPYLMPLHETWMYAETAY 147
Query: 136 YLEPLLDKSRIFRSLLFYIPGVYNRLPQWFPMLYCYLAIVIVVKNKDFPILFRFHVMMGM 195
+L P L+ F L + G RLP WF M Y ++A + +V+ K++P FRFHV+MGM
Sbjct: 148 HLHPFLED---FEFLTYPFLGAIGRLPSWFLMAYFFVAYLGIVRRKEWPHFFRFHVVMGM 204
Query: 196 LLEIAMQIVWVTSNFMPLIHFKGTLGMYYWAGVAVAYIVMMMHCIRCALLGTFVK 250
LLEIA+Q++ S +MPL + G GM++W VA AY+ ++ IRCAL + +
Sbjct: 205 LLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAYLFTVLESIRCALADSVCE 259