Miyakogusa Predicted Gene

Lj3g3v2768270.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2768270.1 tr|O82615|O82615_ARATH At4g10270 OS=Arabidopsis
thaliana GN=T9A4.6 PE=2 SV=1,58.95,2e-19,DUF3774,Protein of unknown
function wound-induced; seg,NULL,CUFF.44601.1
         (95 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10270.1 | Symbols:  | Wound-responsive family protein | chr4...    89   7e-19
AT4G10265.1 | Symbols:  | Wound-responsive family protein | chr4...    88   1e-18
AT4G33560.1 | Symbols:  | Wound-responsive family protein | chr4...    49   8e-07

>AT4G10270.1 | Symbols:  | Wound-responsive family protein |
          chr4:6374805-6375077 FORWARD LENGTH=90
          Length = 90

 Score = 88.6 bits (218), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 60/95 (63%), Gaps = 6/95 (6%)

Query: 1  MSSRSRAWTWTVAASVGVVEALKDQ-GICRWNSVIRSAHQHAKHHVRTXXXXXXXXXXXX 59
          MSS S+AWT  VA S+G VEALKDQ G+CRWN ++RS +QH +++VR+            
Sbjct: 1  MSSTSKAWT--VAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSV 58

Query: 60 XXXXXXXXXXXRDQKAKQAEEDLRTVMYLSCWGPN 94
                       +KAK+AEE LRTVMYLSCWGPN
Sbjct: 59 SAAVTSSG---ESEKAKKAEESLRTVMYLSCWGPN 90


>AT4G10265.1 | Symbols:  | Wound-responsive family protein |
          chr4:6373226-6373477 REVERSE LENGTH=83
          Length = 83

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 59/95 (62%), Gaps = 13/95 (13%)

Query: 1  MSSRSRAWTWTVAASVGVVEALKDQ-GICRWNSVIRSAHQHAKHHVRTXXXXXXXXXXXX 59
          MSS S+  TW VAAS+G VEALKDQ G+CRWN VIRSA+Q+ ++++R+            
Sbjct: 1  MSSASK--TWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSSI 58

Query: 60 XXXXXXXXXXXRDQKAKQAEEDLRTVMYLSCWGPN 94
                        K KQAEE LRTVMYLSCWGP+
Sbjct: 59 DYT----------NKTKQAEESLRTVMYLSCWGPS 83


>AT4G33560.1 | Symbols:  | Wound-responsive family protein |
          chr4:16135465-16135752 FORWARD LENGTH=95
          Length = 95

 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 9  TWTVAASVGVVEALKDQGICRWNSVIRSAHQHAKHHVRTXXXXXXXXXXXXXXXXXXXXX 68
          +W VA ++  VE LKDQG+ RWN + R  H+ A   VRT                     
Sbjct: 8  SWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRT--ITVPSRPSPPTSSSSATSI 65

Query: 69 XXRDQKAKQAEEDLRTVMYLSCWGPNN 95
            +       E      M LSC+GP  
Sbjct: 66 RSKPLSTTPFETSFEKAMGLSCFGPTT 92