Miyakogusa Predicted Gene

Lj3g3v2746110.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2746110.1 tr|D3EPF3|D3EPF3_UCYNA Protein thf1
OS=cyanobacterium UCYN-A GN=thf1 PE=3 SV=1,29.72,2e-18,PS_II_psb29:
photosystem II biogenesis protein Psp,Photosystem II Psp29,
biogenesis; coiled-coil,NUL,
NODE_25831_length_1355_cov_419.680450.path1.1
         (297 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20890.1 | Symbols: PSB29, THF1 | photosystem II reaction cen...   394   e-110

>AT2G20890.1 | Symbols: PSB29, THF1 | photosystem II reaction center
           PSB29 protein | chr2:8987783-8989185 FORWARD LENGTH=300
          Length = 300

 Score =  394 bits (1011), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/292 (68%), Positives = 235/292 (80%), Gaps = 7/292 (2%)

Query: 3   ALTSLSFSAVTQCSERKATLSSTRFLASNSEVFRIRTDFSYHYGGVRASNSSSKMVIQCM 62
           A++SLSF A+ Q S++ +  +S+R LAS     RI T FS      R   S+SK +I CM
Sbjct: 5   AISSLSFPALGQ-SDKISNFASSRPLAS---AIRICTKFSRLSLNSR---STSKSLIHCM 57

Query: 63  SSETDVPPPVSETKLSFLKAYKRPIPSIYNNVLQELIVQQHLMKYKASYRYDPVFALGFV 122
           S+ T   PPVSETK  FLKAYKRPIPSIYN VLQELIVQQHLM+YK +YRYDPVFALGFV
Sbjct: 58  SNVTADVPPVSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFV 117

Query: 123 TVYDKLMEGYPSDEDRDAIFQAYINALKEDPEQYRKDAQKLEEWARAQNPTSLVEFSSKE 182
           TVYD+LMEGYPSD+DRDAIF+AYI AL EDP+QYR DAQK+EEWAR+Q   SLV+FSSKE
Sbjct: 118 TVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKE 177

Query: 183 GEVEGILKDIAVRAGGKGEFSYSRFFAVGLFRLLELANATEPTILEKLCAALNIDKRSVD 242
           G++E +LKDIA RAG K  FSYSRFFAVGLFRLLELA+AT+PT+L+KLCA+LNI+K+SVD
Sbjct: 178 GDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVD 237

Query: 243 RDLDVYRNLLSRLVQAKELLREYVDXXXXXXXXXAEPQKANEAVTKCLGHQL 294
           RDLDVYRNLLS+LVQAKELL+EYV+         A+ QKANE ++KCLG  L
Sbjct: 238 RDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGDTL 289