Miyakogusa Predicted Gene

Lj3g3v2744050.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2744050.1 Non Chatacterized Hit- tr|F6HHI8|F6HHI8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,65.85,2e-19,DUF3774,Protein of unknown function
wound-induced,CUFF.44583.1
         (89 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10265.1 | Symbols:  | Wound-responsive family protein | chr4...   109   5e-25
AT4G10270.1 | Symbols:  | Wound-responsive family protein | chr4...   105   5e-24
AT4G33560.1 | Symbols:  | Wound-responsive family protein | chr4...    54   2e-08

>AT4G10265.1 | Symbols:  | Wound-responsive family protein |
          chr4:6373226-6373477 REVERSE LENGTH=83
          Length = 83

 Score =  109 bits (272), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 57/88 (64%), Positives = 70/88 (79%), Gaps = 7/88 (7%)

Query: 3  SAASKAWIVAASVGAVEALKDQ-GICRWNYVLKHAQQHLKNRVGSLSQTRILSCSSSALF 61
          S+ASK W+VAAS+GAVEALKDQ G+CRWNYV++ A Q+L+N + S+SQ + LS SSS  +
Sbjct: 2  SSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLS-SSSIDY 60

Query: 62 ANKLKGEKAKQAEESLRTVMYLSCWGPN 89
           N     K KQAEESLRTVMYLSCWGP+
Sbjct: 61 TN-----KTKQAEESLRTVMYLSCWGPS 83


>AT4G10270.1 | Symbols:  | Wound-responsive family protein |
          chr4:6374805-6375077 FORWARD LENGTH=90
          Length = 90

 Score =  105 bits (263), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 58/89 (65%), Positives = 68/89 (76%), Gaps = 2/89 (2%)

Query: 3  SAASKAWIVAASVGAVEALKDQ-GICRWNYVLKHAQQHLKNRVGSLSQ-TRILSCSSSAL 60
          S+ SKAW VA S+GAVEALKDQ G+CRWNY+L+   QHL+N V S+SQ  R  S S SA 
Sbjct: 2  SSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAA 61

Query: 61 FANKLKGEKAKQAEESLRTVMYLSCWGPN 89
            +  + EKAK+AEESLRTVMYLSCWGPN
Sbjct: 62 VTSSGESEKAKKAEESLRTVMYLSCWGPN 90


>AT4G33560.1 | Symbols:  | Wound-responsive family protein |
          chr4:16135465-16135752 FORWARD LENGTH=95
          Length = 95

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 1  MNSAASKAWIVAASVGAVEALKDQGICRWNYVLK--HAQQHLKNRVGSLSQTRILSCSSS 58
          MN+    +W VA ++ AVE LKDQG+ RWNY+ +  H +   + R  ++        SSS
Sbjct: 1  MNAGKQASWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSS 60

Query: 59 ALFANKLKGEKAKQAEESLRTVMYLSCWGPN 89
          +  + + K       E S    M LSC+GP 
Sbjct: 61 SATSIRSKPLSTTPFETSFEKAMGLSCFGPT 91