Miyakogusa Predicted Gene

Lj3g3v2742950.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2742950.1 tr|I3RZ73|I3RZ73_LOTJA Cytochrome b6-f complex
iron-sulfur subunit OS=Lotus japonicus PE=2 SV=1,95.36,0,no
description,Rieske [2Fe-2S] iron-sulphur domain; seg,NULL;
CytB6-F_Fe-S,Cytochrome b6-f complex F,CUFF.44592.1
         (237 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G03280.1 | Symbols: PETC, PGR1 | photosynthetic electron tran...   300   4e-82
AT4G03280.2 | Symbols: PETC, PGR1 | photosynthetic electron tran...   285   2e-77
AT5G13430.1 | Symbols:  | Ubiquinol-cytochrome C reductase iron-...    51   5e-07
AT5G13440.1 | Symbols:  | Ubiquinol-cytochrome C reductase iron-...    51   5e-07

>AT4G03280.1 | Symbols: PETC, PGR1 | photosynthetic electron
           transfer C | chr4:1440314-1441717 FORWARD LENGTH=229
          Length = 229

 Score =  300 bits (769), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 166/241 (68%), Positives = 188/241 (78%), Gaps = 16/241 (6%)

Query: 1   MSSTTLSPVTPSQLCSGKSGIFCPSQALLVKPAR--NQMVGKAK-GIRIACMATRGLRLP 57
           M+S++LSP T  QL S +S +   S  L VKP +  +QMV K K G+RI+C A+      
Sbjct: 1   MASSSLSPAT--QLGSSRSALMAMSSGLFVKPTKMNHQMVRKEKIGLRISCQAS------ 52

Query: 58  AVATSIPAYRVPDMEKRKXXXXXXXGAISLPSAGMLVPYATFFAPPGSGSATGGTIAKDA 117
               SIPA RVPDMEKRK       GA+SLP+  MLVPYATFF PPG+G   GGT AKDA
Sbjct: 53  ----SIPADRVPDMEKRKTLNLLLLGALSLPTGYMLVPYATFFVPPGTGGGGGGTPAKDA 108

Query: 118 IGNDVVAEQWLKAHGPGDRTLTQGLKGDPTYLVVEKDRTLATYGINAVCTHLGCVVPFNT 177
           +GNDVVA +WLK HGPGDRTLTQGLKGDPTYLVVE D+TLATYGINAVCTHLGCVVP+N 
Sbjct: 109 LGNDVVAAEWLKTHGPGDRTLTQGLKGDPTYLVVENDKTLATYGINAVCTHLGCVVPWNK 168

Query: 178 AEKKFICPCHGSQYNDQGRVVRGPAPLSLALAHCDVVD-GKVVFVPWVETDFRTGDAPWW 236
           AE KF+CPCHGSQYN QGRVVRGPAPLSLALAH D+ + GKV+FVPWVETDFRTGDAPWW
Sbjct: 169 AENKFLCPCHGSQYNAQGRVVRGPAPLSLALAHADIDEAGKVLFVPWVETDFRTGDAPWW 228

Query: 237 A 237
           +
Sbjct: 229 S 229


>AT4G03280.2 | Symbols: PETC, PGR1 | photosynthetic electron
           transfer C | chr4:1440462-1441717 FORWARD LENGTH=210
          Length = 210

 Score =  285 bits (728), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 156/217 (71%), Positives = 173/217 (79%), Gaps = 14/217 (6%)

Query: 25  SQALLVKPAR--NQMVGKAK-GIRIACMATRGLRLPAVATSIPAYRVPDMEKRKXXXXXX 81
           S  L VKP +  +QMV K K G+RI+C A+          SIPA RVPDMEKRK      
Sbjct: 4   SSGLFVKPTKMNHQMVRKEKIGLRISCQAS----------SIPADRVPDMEKRKTLNLLL 53

Query: 82  XGAISLPSAGMLVPYATFFAPPGSGSATGGTIAKDAIGNDVVAEQWLKAHGPGDRTLTQG 141
            GA+SLP+  MLVPYATFF PPG+G   GGT AKDA+GNDVVA +WLK HGPGDRTLTQG
Sbjct: 54  LGALSLPTGYMLVPYATFFVPPGTGGGGGGTPAKDALGNDVVAAEWLKTHGPGDRTLTQG 113

Query: 142 LKGDPTYLVVEKDRTLATYGINAVCTHLGCVVPFNTAEKKFICPCHGSQYNDQGRVVRGP 201
           LKGDPTYLVVE D+TLATYGINAVCTHLGCVVP+N AE KF+CPCHGSQYN QGRVVRGP
Sbjct: 114 LKGDPTYLVVENDKTLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQYNAQGRVVRGP 173

Query: 202 APLSLALAHCDVVD-GKVVFVPWVETDFRTGDAPWWA 237
           APLSLALAH D+ + GKV+FVPWVETDFRTGDAPWW+
Sbjct: 174 APLSLALAHADIDEAGKVLFVPWVETDFRTGDAPWWS 210


>AT5G13430.1 | Symbols:  | Ubiquinol-cytochrome C reductase
           iron-sulfur subunit | chr5:4305414-4307399 REVERSE
           LENGTH=272
          Length = 272

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 165 VCTHLGCV-VPFNTAEKKFICPCHGSQYNDQGRVVRGPAPLSLAL 208
           VCTHLGC+ +P       + CPCHGS Y+  GR+ +GPAP +L +
Sbjct: 214 VCTHLGCIPLPNAGDYGGWFCPCHGSHYDISGRIRKGPAPYNLEV 258


>AT5G13440.1 | Symbols:  | Ubiquinol-cytochrome C reductase
           iron-sulfur subunit | chr5:4308431-4310022 REVERSE
           LENGTH=274
          Length = 274

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 165 VCTHLGCV-VPFNTAEKKFICPCHGSQYNDQGRVVRGPAPLSLAL 208
           VCTHLGC+ +P       + CPCHGS Y+  GR+ +GPAP +L +
Sbjct: 216 VCTHLGCIPLPNAGDYGGWFCPCHGSHYDISGRIRKGPAPYNLEV 260