Miyakogusa Predicted Gene

Lj3g3v2737500.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2737500.1 tr|D2X656|D2X656_ARTAN KAKTUS 1 (Fragment)
OS=Artemisia annua PE=2 SV=1,50,1e-18,HECT,HECT; seg,NULL; HECT
UBIQUITIN-PROTEIN LIGASE 3 (KAKTUS PROTEIN),NULL; HECT DOMAIN
UBIQUITIN-PR,gene.g49589.t1.1
         (228 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G02880.1 | Symbols: UPL4 | ubiquitin-protein ligase 4 | chr5:...    87   1e-17
AT4G38600.1 | Symbols: KAK, UPL3 | HEAT repeat ;HECT-domain (ubi...    79   2e-15
AT4G38600.2 | Symbols: KAK, UPL3 | HEAT repeat ;HECT-domain (ubi...    79   3e-15

>AT5G02880.1 | Symbols: UPL4 | ubiquitin-protein ligase 4 |
            chr5:662643-668847 FORWARD LENGTH=1502
          Length = 1502

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 61/99 (61%), Gaps = 10/99 (10%)

Query: 127  GYIVGRALQDGRILDLNFSKAFYKLIIKKDLFLYDVESIDATLGRTMKEFHALASRKKHL 186
            G +V +ALQDGR+LDL  SKAFYKLI+ ++L  +D+  +D  L +T+ E  AL  RKK  
Sbjct: 1220 GTVVAKALQDGRVLDLPLSKAFYKLILGQELSSFDIHFVDPELCKTLVELQALVRRKKLF 1279

Query: 187  PSAQ---------LSFRGSGIEDLCLTFTSVPGCPDTDL 216
              A          LSF G+ IEDLCL F ++PG  D DL
Sbjct: 1280 AEAHGDSGAAKCDLSFHGTKIEDLCLEF-ALPGYTDYDL 1317


>AT4G38600.1 | Symbols: KAK, UPL3 | HEAT repeat ;HECT-domain
            (ubiquitin-transferase) | chr4:18041503-18049292 REVERSE
            LENGTH=1888
          Length = 1888

 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 66/110 (60%), Gaps = 12/110 (10%)

Query: 127  GYIVGRALQDGRILDLNFSKAFYKLIIKKDLFLYDVESIDATLGRTMKEFHALASRKKHL 186
            G ++ +ALQDGR+LD+  S AFYKLI+ ++L L+D+   DA LG+T++E   + +RK +L
Sbjct: 1596 GRVMAKALQDGRLLDVPLSTAFYKLILGQELDLHDIVLFDAELGKTLQELRVVVARKHYL 1655

Query: 187  PS---------AQLSFRGSGIEDLCLTFTSVPGCPDTDLFSTDS--DVRN 225
                       + L  RG  IEDL L FT +PG P+  L S D   D+ N
Sbjct: 1656 EGVGGDNSSTISDLCLRGCRIEDLSLEFT-LPGYPEYILRSGDEIVDITN 1704


>AT4G38600.2 | Symbols: KAK, UPL3 | HEAT repeat ;HECT-domain
            (ubiquitin-transferase) | chr4:18041503-18049073 REVERSE
            LENGTH=1794
          Length = 1794

 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 66/110 (60%), Gaps = 12/110 (10%)

Query: 127  GYIVGRALQDGRILDLNFSKAFYKLIIKKDLFLYDVESIDATLGRTMKEFHALASRKKHL 186
            G ++ +ALQDGR+LD+  S AFYKLI+ ++L L+D+   DA LG+T++E   + +RK +L
Sbjct: 1505 GRVMAKALQDGRLLDVPLSTAFYKLILGQELDLHDIVLFDAELGKTLQELRVVVARKHYL 1564

Query: 187  PS---------AQLSFRGSGIEDLCLTFTSVPGCPDTDLFSTDS--DVRN 225
                       + L  RG  IEDL L FT +PG P+  L S D   D+ N
Sbjct: 1565 EGVGGDNSSTISDLCLRGCRIEDLSLEFT-LPGYPEYILRSGDEIVDITN 1613