Miyakogusa Predicted Gene

Lj3g3v2737430.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2737430.1 Non Chatacterized Hit- tr|C6T7D0|C6T7D0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.15097
PE,80.21,0,Ebp2,Eukaryotic rRNA processing; seg,NULL; SUBFAMILY NOT
NAMED,NULL; RRNA PROCESSING PROTEIN EBNA1-B,CUFF.44553.1
         (288 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G22660.1 | Symbols:  | rRNA processing protein-related | chr3...   255   3e-68

>AT3G22660.1 | Symbols:  | rRNA processing protein-related |
           chr3:8016237-8017118 REVERSE LENGTH=293
          Length = 293

 Score =  255 bits (651), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 136/257 (52%), Positives = 166/257 (64%), Gaps = 6/257 (2%)

Query: 34  KLAEPSKTAVYNRDGLLDKLGDISWPENVEWIHKLSIDIDQEEEVDVNDDLKRELAFYTQ 93
           KLAEP+KTA+YNRDGLLDKL DISWPE+V+W HKL+++IDQ   VDVNDDL RE AFYTQ
Sbjct: 41  KLAEPTKTAIYNRDGLLDKLQDISWPEDVDWTHKLTVEIDQGGAVDVNDDLARETAFYTQ 100

Query: 94  ALEGTRQAFEKLQSMGLPFLRPADYYAEMVKTDSHMVKVKGRILXXXXXXXXXXXXXXXX 153
           ALEGTR+AF KL  MG+ FLRPA+YYAEMVK+D HM KVK R+L                
Sbjct: 101 ALEGTREAFGKLNEMGVNFLRPANYYAEMVKSDVHMEKVKSRLLHEKKQIEESEERRKAR 160

Query: 154 XXXXXXXXVQAQKLKERAKQKKENIESVKIWRKQRQQSGFADNGNDADSTFNFEDGKVFT 213
                   VQ+QK+KERAK+KK+NIESVK WRKQRQQSGF+D   + +   +FE GK F 
Sbjct: 161 DNKRMAKEVQSQKMKERAKEKKDNIESVKKWRKQRQQSGFSDKAGEPE--LDFESGKSFQ 218

Query: 214 R-ANKKRPGVXXXXXXXXXXXXXXXXXXXXXXXEARESRYGFXXXXXXXXQNSADTTNDF 272
           R   KKRPGV                       E R+S++G         QN+A+TTNDF
Sbjct: 219 RGGGKKRPGV--SPGDRSGGKGRPTSRMGNKKREFRDSKFGHGGRKGLSKQNTAETTNDF 276

Query: 273 K-TFNKGAVAGDRKRKR 288
           K  F  G  +G++++KR
Sbjct: 277 KGGFRGGKASGNKRQKR 293