Miyakogusa Predicted Gene

Lj3g3v2735180.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2735180.1 tr|B9GPF7|B9GPF7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_755168 PE=4
SV=1,47.83,0.00000000000004,seg,NULL; DUF1442,Protein of unknown
function DUF1442; no description,NULL,CUFF.44533.1
         (198 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G62280.1 | Symbols:  | Protein of unknown function (DUF1442) ...    85   3e-17
AT2G45360.1 | Symbols:  | Protein of unknown function (DUF1442) ...    54   7e-08

>AT5G62280.1 | Symbols:  | Protein of unknown function (DUF1442) |
           chr5:25017165-25017985 FORWARD LENGTH=236
          Length = 236

 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 88/164 (53%), Gaps = 18/164 (10%)

Query: 51  CVCCGENELQASKKALGVHR-HGLEFVVGDAK--CLLLGDYKGADCVLVDCDITSAKEVF 107
           CV  G  EL  S+K L     H ++FVVG++    L+   +  AD VLVDC++ + +E+ 
Sbjct: 73  CVLRGIEELIISQKMLEPSEIHQIQFVVGESNDDTLINNHFGEADFVLVDCNLENHQEIV 132

Query: 108 VAALKGANKDG--------AIVVGYNIRHRASRWR---QLKASFLPIGEGLLVTKIXXXX 156
              L    ++         A+VVGYN   R S WR     K  FLPIGEGLLVT++    
Sbjct: 133 GKILNHHEENARTGGGSGVAVVVGYNAFSRGS-WRFSDGRKTQFLPIGEGLLVTRVNDNQ 191

Query: 157 XXXXXXXXQK---RRSRWIVQVDHCTGEEHIFRVTSPQKKVQIE 197
                   +    R+SRW+V+VD CTGEEH+FRV  P+ +  IE
Sbjct: 192 KMMMKNHHRDQVMRKSRWVVKVDKCTGEEHVFRVRVPRGEAIIE 235


>AT2G45360.1 | Symbols:  | Protein of unknown function (DUF1442) |
           chr2:18698619-18699360 FORWARD LENGTH=215
          Length = 215

 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 21/115 (18%)

Query: 85  LGDYKGADCVLVDCDITSAKEVFVAALKGA--NKDGAIVVGYNIRHRA---SRW------ 133
           + ++ G D ++VD    S +  FV  L+ A  +  GA++V  N  HRA    +W      
Sbjct: 108 MEEFPGVDFLVVD----SKRREFVRTLRFAKLSNKGAVLVCKNAMHRAISGFKWHDVLKR 163

Query: 134 --RQLKASFLPIGEGLLVTKIXXXXXXXXXXXXQKRRSRWIVQVDHCTGEEHIFR 186
             R +++ FLP+G GL +  +            +  RSRWI  VDH +GEEH+FR
Sbjct: 164 GTRVVRSVFLPVGSGLDIVHVGATGRGDS----RNLRSRWIRHVDHLSGEEHLFR 214