Miyakogusa Predicted Gene

Lj3g3v2735120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2735120.1 tr|G7JDE1|G7JDE1_MEDTR ATP-dependent DNA helicase
2 subunit OS=Medicago truncatula GN=MTR_4g023560 P,83.46,0,KU P80 DNA
HELICASE,NULL; KU AUTOANTIGEN DNA HELICASE,NULL; no description,NULL;
no description,Spen,CUFF.44529.1
         (680 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48050.1 | Symbols: KU80, ATKU80 | Ku80 family protein | chr1...   843   0.0  

>AT1G48050.1 | Symbols: KU80, ATKU80 | Ku80 family protein |
           chr1:17723498-17726859 FORWARD LENGTH=680
          Length = 680

 Score =  843 bits (2179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/684 (59%), Positives = 526/684 (76%), Gaps = 12/684 (1%)

Query: 1   MARNKEALLLLLDVGPTMHSVLPEIEKVTSLLVQKKLIYNKYDEVGIVLFGTEDTDNELT 60
           MARN+E L+L+LDVGP M SVLP++EK  S+L+QKKLIYNKYDEVGIV+FGTE+T NEL 
Sbjct: 1   MARNREGLVLVLDVGPAMRSVLPDVEKACSMLLQKKLIYNKYDEVGIVVFGTEETGNELA 60

Query: 61  TEVGGYDHVVVLKNIKVVDGDIVEALQQLPRGTSNGDFLDAVIVGLDMLIKKFGETNKGK 120
            E+GGY++V VL+NI+VVD    E ++QLPRGT  GDFLDA+IVG+DMLIK +G  +KGK
Sbjct: 61  REIGGYENVTVLRNIRVVDELAAEHVKQLPRGTVAGDFLDALIVGMDMLIKMYGNAHKGK 120

Query: 121 KRVCLITNAQCPIKYPFEGTKEEQVTAIAKQMTIHGMKMESIILRGKISQDGNKRTMDEN 180
           KR+CLITNA CP K PFEGTK++QV+ IA +M   G+KMESI++R  +S D ++R ++EN
Sbjct: 121 KRMCLITNAACPTKDPFEGTKDDQVSTIAMKMAAEGIKMESIVMRSNLSGDAHERVIEEN 180

Query: 181 DRLLNIFAEETSTRLLYVENPISLFGAIKTRTITPVTVFRGDLELSPKLRIKVMVYKKTA 240
           D LL +F+     + + V++P+SL G++KTR + PVT+FRGDLE++P ++IKV VYKK A
Sbjct: 181 DHLLTLFSSNAIAKTVNVDSPLSLLGSLKTRRVAPVTLFRGDLEINPTMKIKVWVYKKVA 240

Query: 241 EEKFPTLKRYSDKAPLNDKYATHEVKVEYEYKSSEDPDKVIPPDQRIKGYRYGPQIVPIS 300
           EE+ PTLK YSDKAP  DK+A HEVKV+Y+YK + +  +VI P++RIKG+RYGPQ++PIS
Sbjct: 241 EERLPTLKMYSDKAPPTDKFAKHEVKVDYDYKVTAESTEVIAPEERIKGFRYGPQVIPIS 300

Query: 301 STEWEAVKFKTEKGVKLLGFTDSSNVLRHQYMKDVYVFIAEPENTKAILAVSALARAMKE 360
             + E +KFKT+KG+KLLGFT++SN+LRH YMKDV + + +P   K++LAVSA+AR MKE
Sbjct: 301 PDQIETLKFKTDKGMKLLGFTEASNILRHYYMKDVNIVVPDPSKEKSVLAVSAIAREMKE 360

Query: 361 MNKVAILRCVWRQGQANVVIGVLTPNLSDGDNIPDSFYFNVLPFAEDVREFQFSSFTNFP 420
            NKVAI+RCVWR GQ NVV+GVLTPN+S+ D+ PDSFYFNVLPFAEDVREF F SF   P
Sbjct: 361 TNKVAIVRCVWRNGQGNVVVGVLTPNVSERDDTPDSFYFNVLPFAEDVREFPFPSFNKLP 420

Query: 421 ASCQPNEQQLESAANLVKMLDLAPQGKEEVLRPDFTPNPVLERFYRFLEVKSKHPDAAVP 480
           +S +P+EQQ   A NLVKMLDLAP  +EEVL+PD TPNPVL+RFY +LE+KSK  DA +P
Sbjct: 421 SSWKPDEQQQAVADNLVKMLDLAPSAEEEVLKPDLTPNPVLQRFYEYLELKSKSTDATLP 480

Query: 481 PIDDTLKKITEPDADLVLQNQSVIDAFCRSFELKENP-LKK--RRLLQENISSSMDEEGK 537
           P+D T K++ E D +L   N+S++D F  SFE+KENP LKK  +RLL++  S S DE+ +
Sbjct: 481 PMDGTFKRLMEQDPELSSNNKSIMDTFRGSFEVKENPKLKKASKRLLRDKPSGSDDEDNR 540

Query: 538 GNITAQPANLIESVKVENIGDVTPVQDFEAMISRRDSPEWVVKAIKDMKNKIFDLVEDSN 597
                   N     K++ +GD  P+QDFEAMISRRD  +W  KAI  MKN I  LVE+  
Sbjct: 541 MITYDAKEN-----KIDIVGDANPIQDFEAMISRRDKTDWTEKAITQMKNLIMKLVENCT 595

Query: 598 D-GDNYPKALECLVVLRKGCILEQEPKQFNDFLKHLCNFCREKNLDGFCEYLASKELTLI 656
           D GD   KALEC++ LRKGC+LEQEPKQFN+FL HL   C+E+NL    E+  SK++TLI
Sbjct: 596 DEGD---KALECVLALRKGCVLEQEPKQFNEFLNHLFKLCQERNLSHLLEHFMSKKITLI 652

Query: 657 SKTEAADSEVTDDEARSFLVKSET 680
            K+EAADS++ D+ A  F+VK E+
Sbjct: 653 PKSEAADSDIVDENAGDFIVKQES 676