Miyakogusa Predicted Gene
- Lj3g3v2723650.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2723650.1 Non Chatacterized Hit- tr|F6HUK8|F6HUK8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,38.4,0.0000000000001,FAMILY NOT NAMED,NULL; seg,NULL;
WRC,WRC,CUFF.44502.1
(402 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G45480.1 | Symbols: AtGRF9, GRF9 | growth-regulating factor 9... 104 1e-22
AT4G37740.1 | Symbols: AtGRF2, GRF2 | growth-regulating factor 2... 104 1e-22
AT2G22840.1 | Symbols: AtGRF1, GRF1 | growth-regulating factor 1... 103 2e-22
AT2G36400.1 | Symbols: AtGRF3, GRF3 | growth-regulating factor 3... 94 2e-19
AT3G52910.1 | Symbols: AtGRF4, GRF4 | growth-regulating factor 4... 89 8e-18
AT3G13960.1 | Symbols: AtGRF5, GRF5 | growth-regulating factor 5... 89 8e-18
AT5G53660.1 | Symbols: AtGRF7, GRF7 | growth-regulating factor 7... 88 1e-17
AT2G06200.1 | Symbols: AtGRF6, GRF6 | growth-regulating factor 6... 87 2e-17
AT4G24150.1 | Symbols: AtGRF8, GRF8 | growth-regulating factor 8... 79 5e-15
>AT2G45480.1 | Symbols: AtGRF9, GRF9 | growth-regulating factor 9 |
chr2:18745583-18747403 FORWARD LENGTH=429
Length = 429
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 134/323 (41%), Gaps = 42/323 (13%)
Query: 74 QRRELDHQVFIFNRFASNLPLPHHML----------------QFPSHMSENLGFDYGTMV 117
Q E Q ++ + L +PHH++ S + N G T +
Sbjct: 27 QLMEFRMQALVYRYIEAGLRVPHHLVVPIWNSLALSSSSNYNYHSSSLLSNKGV---THI 83
Query: 118 D--DPEPHRCRRTDGRKWRCGKNTVPDQKYCERHMH--RGRNRSRKPVEKSSEVNSSLTT 173
D + EP RCRRTDG+KWRC + +KYCERHMH R R+R +S+
Sbjct: 84 DTLETEPTRCRRTDGKKWRCSNTVLLFEKYCERHMHRGRKRSRKLVESSSEVASSSTKYD 143
Query: 174 KPCGNMSHAKPAPSTESAVSSPNN---VTIHEPPSTQS--SIVNTSSLNSRSRNVT---G 225
G + + +S +N VTI PS +S +++ S + S N + G
Sbjct: 144 NTYGLDRYNESQSHLHGTISGSSNAQVVTIASLPSARSCENVIRPSLVISEFTNKSVSHG 203
Query: 226 SADYQSPLSPAVAPKLTTFSSMASVTPHNRSHLNVHNKKDEQNSSCXXXXXXX------- 278
+ + + K + + S +V E + C
Sbjct: 204 RKNMEMSYDDFINEKEASMCVGVVPLQGDESKPSVQKFFPEVSDKCLEAAKFSSNRKNDI 263
Query: 279 -XXXXXXXXVCDSNGISTGIGFSPRSVLQVSGCNHAYLNYRNNVESEAGRCRRTDGKKWR 337
+ + G+ GI FSP +VLQ GC + ++E GRCRRTDGKKWR
Sbjct: 264 IARSREWKNMNVNGGLFHGIHFSPDTVLQERGC---FRLQGVETDNEPGRCRRTDGKKWR 320
Query: 338 CKGCVLPGQKYCATHVNRGAKKR 360
C VL GQKYC H++RG KK+
Sbjct: 321 CSKDVLSGQKYCDKHMHRGMKKK 343
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 119 DPEPHRCRRTDGRKWRCGKNTVPDQKYCERHMHRGRNRSRKPVE 162
D EP RCRRTDG+KWRC K+ + QKYC++HMHRG + + PV+
Sbjct: 305 DNEPGRCRRTDGKKWRCSKDVLSGQKYCDKHMHRGMKK-KHPVD 347
>AT4G37740.1 | Symbols: AtGRF2, GRF2 | growth-regulating factor 2 |
chr4:17725533-17727609 REVERSE LENGTH=535
Length = 535
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 71/116 (61%), Gaps = 17/116 (14%)
Query: 70 FSDFQRRELDHQVFIFNRFASNLPLPHHML-----QF-------PSHM---SENLGFDYG 114
F+ Q EL+ Q I+ +N+P+P +L F PS + +LGF G
Sbjct: 165 FTLTQWAELEQQALIYKYITANVPVPSSLLISIKKSFYPYGSLPPSSFGWGTFHLGFAGG 224
Query: 115 TMVDDPEPHRCRRTDGRKWRCGKNTVPDQKYCERHMHRGRNRSRKPVEKSSEVNSS 170
M DPEP RCRRTDG+KWRC ++ VPDQKYCERH++RGR+RSRKPVE S N +
Sbjct: 225 NM--DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEVQSGQNQT 278
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 293 ISTGIGFSPRSVLQVS--GCNHAYLNYRN-NVESEAGRCRRTDGKKWRCKGCVLPGQKYC 349
IS F P L S G +L + N++ E GRCRRTDGKKWRC +P QKYC
Sbjct: 195 ISIKKSFYPYGSLPPSSFGWGTFHLGFAGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYC 254
Query: 350 ATHVNRG 356
H+NRG
Sbjct: 255 ERHINRG 261
>AT2G22840.1 | Symbols: AtGRF1, GRF1 | growth-regulating factor 1 |
chr2:9728841-9731141 FORWARD LENGTH=530
Length = 530
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 67/108 (62%), Gaps = 17/108 (15%)
Query: 70 FSDFQRRELDHQVFIFNRFASNLPLPHHMLQ------FP---------SHMSENLGFDYG 114
FS Q EL+ Q I+ +N+P+P +L FP S +LGF G
Sbjct: 134 FSLTQWAELEQQALIYKYITANVPVPSSLLLSLKKSFFPYGSLPPNSFGWGSFHLGFSGG 193
Query: 115 TMVDDPEPHRCRRTDGRKWRCGKNTVPDQKYCERHMHRGRNRSRKPVE 162
M DPEP RCRRTDG+KWRC ++ VPDQKYCERH++RGR+RSRKPVE
Sbjct: 194 NM--DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 239
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 28/37 (75%)
Query: 320 NVESEAGRCRRTDGKKWRCKGCVLPGQKYCATHVNRG 356
N++ E GRCRRTDGKKWRC +P QKYC H+NRG
Sbjct: 194 NMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRG 230
>AT2G36400.1 | Symbols: AtGRF3, GRF3 | growth-regulating factor 3 |
chr2:15270300-15272617 REVERSE LENGTH=398
Length = 398
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 64/120 (53%), Gaps = 18/120 (15%)
Query: 69 LFSDFQRRELDHQVFIFNRFASNLPLPHHML-------------QFPSHMSENL-----G 110
FS Q +EL+ Q I+ + +P +L F H ++L
Sbjct: 76 FFSWAQWQELELQALIYRYMLAGAAVPQELLLPIKKSLLHLSPSYFLHHPLQHLPHYQPA 135
Query: 111 FDYGTMVDDPEPHRCRRTDGRKWRCGKNTVPDQKYCERHMHRGRNRSRKPVEKSSEVNSS 170
+ G DPEP RCRRTDG+KWRC ++ KYCERHMHRGRNRSRKPVE + VN++
Sbjct: 136 WYLGRAAMDPEPGRCRRTDGKKWRCSRDVFAGHKYCERHMHRGRNRSRKPVETPTTVNAT 195
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 29/44 (65%)
Query: 313 AYLNYRNNVESEAGRCRRTDGKKWRCKGCVLPGQKYCATHVNRG 356
A+ R ++ E GRCRRTDGKKWRC V G KYC H++RG
Sbjct: 135 AWYLGRAAMDPEPGRCRRTDGKKWRCSRDVFAGHKYCERHMHRG 178
>AT3G52910.1 | Symbols: AtGRF4, GRF4 | growth-regulating factor 4 |
chr3:19616177-19618268 REVERSE LENGTH=380
Length = 380
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 61/116 (52%), Gaps = 25/116 (21%)
Query: 69 LFSDFQRRELDHQVFIFNRFASNLPLP--------------------HHMLQ--FPSHMS 106
FS Q +EL+ Q I+ + +P HH LQ FP H
Sbjct: 82 FFSWAQWQELELQALIYRYMLAGASVPQELLLPIKKSLLHQSPMHFLHHPLQHSFPHHQP 141
Query: 107 ENLGFDYGTMVDDPEPHRCRRTDGRKWRCGKNTVPDQKYCERHMHRGRNRSRKPVE 162
+ +G DPEP RC+RTDG+KWRC ++ V KYC+RH+HRGRNRSRKPVE
Sbjct: 142 S---WYWGRGAMDPEPGRCKRTDGKKWRCSRDVVAGHKYCDRHIHRGRNRSRKPVE 194
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 318 RNNVESEAGRCRRTDGKKWRCKGCVLPGQKYCATHVNRG 356
R ++ E GRC+RTDGKKWRC V+ G KYC H++RG
Sbjct: 147 RGAMDPEPGRCKRTDGKKWRCSRDVVAGHKYCDRHIHRG 185
>AT3G13960.1 | Symbols: AtGRF5, GRF5 | growth-regulating factor 5 |
chr3:4608526-4610160 FORWARD LENGTH=397
Length = 397
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 61/110 (55%), Gaps = 17/110 (15%)
Query: 70 FSDFQRRELDHQVFIFNRFASNLPLPHHML-------------QFPSHMSENLG---FDY 113
F+ Q EL+HQ I+ S +P+P ++ + H S G +
Sbjct: 17 FTPTQWEELEHQALIYKYMVSGVPVPPELIFSIRRSLDTSLVSRLLPHQSLGWGCYQMGF 76
Query: 114 GTMVDDPEPHRCRRTDGRKWRCGKNTVPDQKYCERHMHRGRNRSRKPVEK 163
G D PEP RCRRTDG+KWRC + PD KYCE+HMHRGRNR+RK +++
Sbjct: 77 GRKPD-PEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNRARKSLDQ 125
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 324 EAGRCRRTDGKKWRCKGCVLPGQKYCATHVNRG 356
E GRCRRTDGKKWRC P KYC H++RG
Sbjct: 83 EPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRG 115
>AT5G53660.1 | Symbols: AtGRF7, GRF7 | growth-regulating factor 7 |
chr5:21794636-21795929 FORWARD LENGTH=365
Length = 365
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 59/94 (62%), Gaps = 4/94 (4%)
Query: 70 FSDFQRRELDHQVFIFNRFASNLPLPHHML-QFPSHMSENLGFDYGTMVDDPEPHRCRRT 128
F++ Q +EL+ Q I+ +++P+P +L PS S + + D EP RCRRT
Sbjct: 60 FTNAQLKELERQAMIYKYMIASIPVPFDLLVSSPSSASP---CNNKNIAGDLEPGRCRRT 116
Query: 129 DGRKWRCGKNTVPDQKYCERHMHRGRNRSRKPVE 162
DG+KWRC K V + KYCE+H+HRGR RSRK VE
Sbjct: 117 DGKKWRCAKEVVSNHKYCEKHLHRGRPRSRKHVE 150
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 24/33 (72%)
Query: 324 EAGRCRRTDGKKWRCKGCVLPGQKYCATHVNRG 356
E GRCRRTDGKKWRC V+ KYC H++RG
Sbjct: 109 EPGRCRRTDGKKWRCAKEVVSNHKYCEKHLHRG 141
>AT2G06200.1 | Symbols: AtGRF6, GRF6 | growth-regulating factor 6 |
chr2:2426340-2427255 FORWARD LENGTH=244
Length = 244
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 63/117 (53%), Gaps = 26/117 (22%)
Query: 70 FSDFQRRELDHQVFIFNRFASNLPLPHHMLQFPSH--------------------MSENL 109
F++ Q EL++Q +F A+N+P+P H+L +S +
Sbjct: 7 FTESQWEELENQALVFKYLAANMPVPPHLLFLIKRPFLFSSSSSSSSSSSFFSPTLSPHF 66
Query: 110 GFDYGTM----VDDPEPHRCRRTDGRKWRCGKNTVPDQKYCERHMHRGRNR--SRKP 160
G++ M D EP RCRRTDG+KWRC K PD KYCERHMHRG+NR SRKP
Sbjct: 67 GWNVYEMGMGRKIDAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSSSRKP 123
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 309 GCNHAYLNYRNNVESEAGRCRRTDGKKWRCKGCVLPGQKYCATHVNRGAKK 359
G N + +++E GRCRRTDGKKWRC P KYC H++RG +
Sbjct: 67 GWNVYEMGMGRKIDAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNR 117
>AT4G24150.1 | Symbols: AtGRF8, GRF8 | growth-regulating factor 8 |
chr4:12535972-12539387 FORWARD LENGTH=493
Length = 493
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 37/46 (80%)
Query: 119 DPEPHRCRRTDGRKWRCGKNTVPDQKYCERHMHRGRNRSRKPVEKS 164
D EP RC+RTDG+KWRC +N +PDQKYCERH H+ R RSRK VE S
Sbjct: 243 DLEPWRCKRTDGKKWRCSRNVIPDQKYCERHTHKSRPRSRKHVESS 288
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 319 NNVESEAGRCRRTDGKKWRCKGCVLPGQKYCATHVNR 355
N + E RC+RTDGKKWRC V+P QKYC H ++
Sbjct: 240 NTADLEPWRCKRTDGKKWRCSRNVIPDQKYCERHTHK 276