Miyakogusa Predicted Gene

Lj3g3v2722600.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2722600.2 CUFF.44498.2
         (438 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G45540.1 | Symbols:  | WD-40 repeat family protein / beige-re...   469   e-132
AT2G45540.2 | Symbols:  | WD-40 repeat family protein / beige-re...   469   e-132

>AT2G45540.1 | Symbols:  | WD-40 repeat family protein / beige-related
            | chr2:18757881-18772229 REVERSE LENGTH=2946
          Length = 2946

 Score =  469 bits (1207), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 244/440 (55%), Positives = 312/440 (70%), Gaps = 18/440 (4%)

Query: 1    MPLAEALHLQTIFRNPKEVKPYAVPSSEYCNLPAAAIHASSDMVVVVDCNAPAAHVARHK 60
            MPL + LH+QTIFRNPKE+KPY V + E CNLPA+AI ASSD VV+VD N PAA VA+HK
Sbjct: 2510 MPLKDVLHMQTIFRNPKEIKPYTVQTPERCNLPASAIQASSDSVVIVDMNVPAARVAQHK 2569

Query: 61   WQPNTPDGQGSPFLFQNGKAISDSASGTIVRMFKGP--TGTGEQWQFPQALAFGVSGIRS 118
            WQPNTPDGQG+PFLF +GKA + S SG+++RMFKGP  +GTG+ WQFPQA AF  SGIRS
Sbjct: 2570 WQPNTPDGQGTPFLFHHGKATTTSTSGSLMRMFKGPASSGTGD-WQFPQAQAFASSGIRS 2628

Query: 119  QAIVSVTCDKEIITGGHADNSVRVISSDGAKTLETAYAHCAPVTCLSLSSDSYYLVTGSR 178
             +++++T D EIITGGHADNS++++SSDGAKTLETA+ HCAPVTCL+LS D+ +LVTGSR
Sbjct: 2629 SSVIAITSDGEIITGGHADNSIKLVSSDGAKTLETAFGHCAPVTCLALSPDNNFLVTGSR 2688

Query: 179  DTTILLWRIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLLLEKNRRRRIEGPIQVLRG 238
            D+T+LLWRIH                             + L  K ++ R+EGPIQVLRG
Sbjct: 2689 DSTVLLWRIH-KAFTSRTSVSEPSTGSGAPSSTSNTNLANTLANKGKKCRLEGPIQVLRG 2747

Query: 239  HHSEILSCCVSSDLGVVVSCSQTTDVXXXXXXXXXXXXXXDGVVAHTVCLSSEGLVITWN 298
            H  E++ CCVSSD GVVVS S+++DV               GV A ++C+SS+G+++ W+
Sbjct: 2748 HRRELVCCCVSSDQGVVVSSSESSDVLLHSIRKGRLIRRLVGVKADSLCISSDGVIMAWS 2807

Query: 299  ELQHTLSTFTLNGVLTATTELSFSSSISCMEVSVDGKNALIGINSLENGRARNNDLNLQS 358
              + ++S FT+NGVL A  +     S+ CME+S+DG+NALIG+NS  N    +++   + 
Sbjct: 2808 SSEGSISVFTINGVLIAKAKFPLFCSVGCMEISMDGQNALIGMNSCSNSDYSSSNDTSKD 2867

Query: 359  SKPGIVDFNSESEKTHEGYRIDAPTPSICFLDLHTLEVFHVLKLEEGQDITTLALNKDNT 418
            SK              E  R+D P+PSICFL+L+TL+VFHVLKL +GQDIT LALN DNT
Sbjct: 2868 SK--------------EIERLDVPSPSICFLNLYTLQVFHVLKLGQGQDITALALNVDNT 2913

Query: 419  NLLVSTMDKQLIIFTDPAVS 438
            NLLVST DKQLIIFTDPA+S
Sbjct: 2914 NLLVSTEDKQLIIFTDPALS 2933


>AT2G45540.2 | Symbols:  | WD-40 repeat family protein / beige-related
            | chr2:18757881-18772229 REVERSE LENGTH=3001
          Length = 3001

 Score =  469 bits (1206), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 244/440 (55%), Positives = 312/440 (70%), Gaps = 18/440 (4%)

Query: 1    MPLAEALHLQTIFRNPKEVKPYAVPSSEYCNLPAAAIHASSDMVVVVDCNAPAAHVARHK 60
            MPL + LH+QTIFRNPKE+KPY V + E CNLPA+AI ASSD VV+VD N PAA VA+HK
Sbjct: 2565 MPLKDVLHMQTIFRNPKEIKPYTVQTPERCNLPASAIQASSDSVVIVDMNVPAARVAQHK 2624

Query: 61   WQPNTPDGQGSPFLFQNGKAISDSASGTIVRMFKGP--TGTGEQWQFPQALAFGVSGIRS 118
            WQPNTPDGQG+PFLF +GKA + S SG+++RMFKGP  +GTG+ WQFPQA AF  SGIRS
Sbjct: 2625 WQPNTPDGQGTPFLFHHGKATTTSTSGSLMRMFKGPASSGTGD-WQFPQAQAFASSGIRS 2683

Query: 119  QAIVSVTCDKEIITGGHADNSVRVISSDGAKTLETAYAHCAPVTCLSLSSDSYYLVTGSR 178
             +++++T D EIITGGHADNS++++SSDGAKTLETA+ HCAPVTCL+LS D+ +LVTGSR
Sbjct: 2684 SSVIAITSDGEIITGGHADNSIKLVSSDGAKTLETAFGHCAPVTCLALSPDNNFLVTGSR 2743

Query: 179  DTTILLWRIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLLLEKNRRRRIEGPIQVLRG 238
            D+T+LLWRIH                             + L  K ++ R+EGPIQVLRG
Sbjct: 2744 DSTVLLWRIH-KAFTSRTSVSEPSTGSGAPSSTSNTNLANTLANKGKKCRLEGPIQVLRG 2802

Query: 239  HHSEILSCCVSSDLGVVVSCSQTTDVXXXXXXXXXXXXXXDGVVAHTVCLSSEGLVITWN 298
            H  E++ CCVSSD GVVVS S+++DV               GV A ++C+SS+G+++ W+
Sbjct: 2803 HRRELVCCCVSSDQGVVVSSSESSDVLLHSIRKGRLIRRLVGVKADSLCISSDGVIMAWS 2862

Query: 299  ELQHTLSTFTLNGVLTATTELSFSSSISCMEVSVDGKNALIGINSLENGRARNNDLNLQS 358
              + ++S FT+NGVL A  +     S+ CME+S+DG+NALIG+NS  N    +++   + 
Sbjct: 2863 SSEGSISVFTINGVLIAKAKFPLFCSVGCMEISMDGQNALIGMNSCSNSDYSSSNDTSKD 2922

Query: 359  SKPGIVDFNSESEKTHEGYRIDAPTPSICFLDLHTLEVFHVLKLEEGQDITTLALNKDNT 418
            SK              E  R+D P+PSICFL+L+TL+VFHVLKL +GQDIT LALN DNT
Sbjct: 2923 SK--------------EIERLDVPSPSICFLNLYTLQVFHVLKLGQGQDITALALNVDNT 2968

Query: 419  NLLVSTMDKQLIIFTDPAVS 438
            NLLVST DKQLIIFTDPA+S
Sbjct: 2969 NLLVSTEDKQLIIFTDPALS 2988