Miyakogusa Predicted Gene
- Lj3g3v2720150.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2720150.2 Non Chatacterized Hit- tr|I1KIL1|I1KIL1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.29265
PE,67.39,0,seg,NULL; 2-HYDROXYACID DEHYDROGENASE,NULL; 2-HYDROXYACID
DEHYDROGENASE-RELATED,NULL; no description,CUFF.44481.2
(277 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G45630.2 | Symbols: | D-isomer specific 2-hydroxyacid dehydr... 271 4e-73
AT1G12550.1 | Symbols: | D-isomer specific 2-hydroxyacid dehydr... 240 1e-63
AT1G79870.1 | Symbols: | D-isomer specific 2-hydroxyacid dehydr... 179 1e-45
AT1G79870.2 | Symbols: | D-isomer specific 2-hydroxyacid dehydr... 172 2e-43
AT2G45630.1 | Symbols: | D-isomer specific 2-hydroxyacid dehydr... 127 1e-29
AT1G72190.1 | Symbols: | D-isomer specific 2-hydroxyacid dehydr... 82 4e-16
AT5G14780.1 | Symbols: FDH | formate dehydrogenase | chr5:477704... 59 5e-09
AT1G68010.1 | Symbols: HPR, ATHPR1 | hydroxypyruvate reductase |... 59 5e-09
AT3G19480.1 | Symbols: | D-3-phosphoglycerate dehydrogenase | c... 58 6e-09
AT1G17745.1 | Symbols: PGDH | D-3-phosphoglycerate dehydrogenase... 57 1e-08
AT4G34200.1 | Symbols: EDA9 | D-3-phosphoglycerate dehydrogenase... 56 2e-08
AT1G68010.2 | Symbols: HPR | hydroxypyruvate reductase | chr1:25... 54 1e-07
>AT2G45630.2 | Symbols: | D-isomer specific 2-hydroxyacid
dehydrogenase family protein | chr2:18796000-18797089
FORWARD LENGTH=338
Length = 338
Score = 271 bits (692), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 143/287 (49%), Positives = 192/287 (66%), Gaps = 13/287 (4%)
Query: 3 VQNHHSSSSTEHLPKVLLYGPPSLSSIIKPH--PSHNFQILN---------QFLPTHASS 51
V +SSSTE LP+VL+ P +++ S F+IL +FL H+ S
Sbjct: 9 VATMATSSSTEKLPRVLIVKRPDAMAVLGDGFVASTKFEILKAFESPLPLPEFLAYHSDS 68
Query: 52 IHAVVTTDVSFLVNADLIGLLPSLRLVVTGSAGTDHVDLSECRRRGIQVASAGNLYSDDV 111
I A++ V+ V ADLI +LP+LRLVVT SAG DHVDL ECRRRGI VA+AG+ +S+DV
Sbjct: 69 ISAIIAP-VAAPVTADLIRILPNLRLVVTTSAGVDHVDLVECRRRGISVANAGSSFSEDV 127
Query: 112 ADLAVALLIDVTWKISAADTNFRRRLQPPSWDFPSSSKLAXXXXXXXXXXXXXXEVAKRL 171
AD AV LLIDV +ISAA+ ++R P D+P SKL +VA RL
Sbjct: 128 ADTAVGLLIDVFRRISAANRFVKQRFWPLKGDYPLGSKLGRKRIGIVGLGSIGSKVATRL 187
Query: 172 EAFGCTILYNSRNKKPF-VSYPFYSSVVELASNSNVLVLCCDLNDQTKHIINREAMLALG 230
+AFGC I Y+SRN+KP+ V Y +Y + E+A+NS+ L++CC+LN++T +IN++ + ALG
Sbjct: 188 DAFGCQISYSSRNRKPYDVPYHYYMDIEEMAANSDALIICCELNEKTLRLINKDVLSALG 247
Query: 231 KEGIIVNVGRGSLIDERELLKCLMEGEIRGAGLDVFENEPQVPKEFF 277
K G+IVNV RG++IDE E+++CL EGEI GAGLDVFE+EP VPKE F
Sbjct: 248 KRGVIVNVARGAIIDEEEMVRCLREGEIGGAGLDVFEDEPNVPKELF 294
>AT1G12550.1 | Symbols: | D-isomer specific 2-hydroxyacid
dehydrogenase family protein | chr1:4274649-4275831
FORWARD LENGTH=323
Length = 323
Score = 240 bits (612), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 131/273 (47%), Positives = 171/273 (62%), Gaps = 14/273 (5%)
Query: 16 PKVLLYGPPSLS-----------SIIKPHPSHNFQILNQFLPTHASSIHAVVTTDVSFLV 64
P VLL+ PPSL+ ++I S + L F P HASS A V + V
Sbjct: 8 PVVLLHRPPSLTFMDEILTREFRTLITDTSSS--ESLPSFFPRHASSARAFVISG-RLPV 64
Query: 65 NADLIGLLPSLRLVVTGSAGTDHVDLSECRRRGIQVASAGNLYSDDVADLAVALLIDVTW 124
+L+ LPSL+++V S G DH+DL+ C+RRGI + +AGN +SDDVAD AV LLI V
Sbjct: 65 TDELLSHLPSLQILVCTSVGIDHIDLAACKRRGIVITNAGNAFSDDVADCAVGLLISVLR 124
Query: 125 KISAADTNFRRRLQPPSWDFPSSSKLAXXXXXXXXXXXXXXEVAKRLEAFGCTILYNSRN 184
+I AAD R DF SK++ VAKRLE+FGC I YNSR+
Sbjct: 125 RIPAADRYVRSGNWAKFGDFQLGSKVSGKRVGIVGLGSIGSFVAKRLESFGCVISYNSRS 184
Query: 185 KKPFVSYPFYSSVVELASNSNVLVLCCDLNDQTKHIINREAMLALGKEGIIVNVGRGSLI 244
+K Y +YS ++ LA N++VLVLCC L D+T HI+NRE M LGK+G+++NVGRG LI
Sbjct: 185 QKQSSPYRYYSDILSLAENNDVLVLCCSLTDETHHIVNREVMELLGKDGVVINVGRGKLI 244
Query: 245 DERELLKCLMEGEIRGAGLDVFENEPQVPKEFF 277
DE+E++KCL++G I GAGLDVFENEP VP+E F
Sbjct: 245 DEKEMVKCLVDGVIGGAGLDVFENEPAVPQELF 277
>AT1G79870.1 | Symbols: | D-isomer specific 2-hydroxyacid
dehydrogenase family protein | chr1:30044794-30045851
FORWARD LENGTH=313
Length = 313
Score = 179 bits (455), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 149/237 (62%), Gaps = 8/237 (3%)
Query: 44 FLPTHASSIHAVVTTDVSFLVNADLIGLLPSLRLVVTGSAGTDHVDLSECRRRGIQVASA 103
L TH +SI AVV + S +A LI LP+L +V + S G D +DL +C+ +GI+V +
Sbjct: 38 LLETHRNSIRAVVG-NASAGADAQLISDLPNLEIVSSFSVGLDKIDLGKCKEKGIRVTNT 96
Query: 104 GNLYSDDVADLAVALLIDVTWKISAADTNFRRRLQPPSW---DFPSSSKLAXXXXXXXXX 160
++ ++DVADLA+ L++ + ++ D R ++ W +F ++K +
Sbjct: 97 PDVLTEDVADLAIGLILALLRRLCECD----RYVRSGKWKQGEFQLTTKFSGKSVGIIGL 152
Query: 161 XXXXXEVAKRLEAFGCTILYNSRNKKPFVSYPFYSSVVELASNSNVLVLCCDLNDQTKHI 220
+AKR EAF C I Y SR KP V+Y +Y +VV+LA NS++LV+ C L +QT+HI
Sbjct: 153 GRIGTAIAKRAEAFSCPINYYSRTIKPDVAYKYYPTVVDLAQNSDILVVACPLTEQTRHI 212
Query: 221 INREAMLALGKEGIIVNVGRGSLIDERELLKCLMEGEIRGAGLDVFENEPQVPKEFF 277
++R+ M ALG +G+++N+GRG +DE+EL+K L EG + GA LDVFE EP VP+E F
Sbjct: 213 VDRQVMDALGAKGVLINIGRGPHVDEQELIKALTEGRLGGAALDVFEQEPHVPEELF 269
>AT1G79870.2 | Symbols: | D-isomer specific 2-hydroxyacid
dehydrogenase family protein | chr1:30044794-30045851
FORWARD LENGTH=294
Length = 294
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/234 (41%), Positives = 145/234 (61%), Gaps = 21/234 (8%)
Query: 44 FLPTHASSIHAVVTTDVSFLVNADLIGLLPSLRLVVTGSAGTDHVDLSECRRRGIQVASA 103
L TH +SI AVV + S +A LI LP+L +V + S G D +DL +C+ +GI+V +
Sbjct: 38 LLETHRNSIRAVVG-NASAGADAQLISDLPNLEIVSSFSVGLDKIDLGKCKEKGIRVTNT 96
Query: 104 GNLYSDDVADLAVALLIDVTWKISAADTNFRRRLQPPSWDFPSSSKLAXXXXXXXXXXXX 163
++ ++DVADLA+ L++ + ++ D R ++ W ++
Sbjct: 97 PDVLTEDVADLAIGLILALLRRLCECD----RYVRSGKW---KQGRIGTA---------- 139
Query: 164 XXEVAKRLEAFGCTILYNSRNKKPFVSYPFYSSVVELASNSNVLVLCCDLNDQTKHIINR 223
+AKR EAF C I Y SR KP V+Y +Y +VV+LA NS++LV+ C L +QT+HI++R
Sbjct: 140 ---IAKRAEAFSCPINYYSRTIKPDVAYKYYPTVVDLAQNSDILVVACPLTEQTRHIVDR 196
Query: 224 EAMLALGKEGIIVNVGRGSLIDERELLKCLMEGEIRGAGLDVFENEPQVPKEFF 277
+ M ALG +G+++N+GRG +DE+EL+K L EG + GA LDVFE EP VP+E F
Sbjct: 197 QVMDALGAKGVLINIGRGPHVDEQELIKALTEGRLGGAALDVFEQEPHVPEELF 250
>AT2G45630.1 | Symbols: | D-isomer specific 2-hydroxyacid
dehydrogenase family protein | chr2:18796000-18796560
FORWARD LENGTH=186
Length = 186
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 100/159 (62%), Gaps = 12/159 (7%)
Query: 3 VQNHHSSSSTEHLPKVLLYGPPSLSSIIKPH--PSHNFQILN---------QFLPTHASS 51
V +SSSTE LP+VL+ P +++ S F+IL +FL H+ S
Sbjct: 9 VATMATSSSTEKLPRVLIVKRPDAMAVLGDGFVASTKFEILKAFESPLPLPEFLAYHSDS 68
Query: 52 IHAVVTTDVSFLVNADLIGLLPSLRLVVTGSAGTDHVDLSECRRRGIQVASAGNLYSDDV 111
I A++ V+ V ADLI +LP+LRLVVT SAG DHVDL ECRRRGI VA+AG+ +S+DV
Sbjct: 69 ISAIIAP-VAAPVTADLIRILPNLRLVVTTSAGVDHVDLVECRRRGISVANAGSSFSEDV 127
Query: 112 ADLAVALLIDVTWKISAADTNFRRRLQPPSWDFPSSSKL 150
AD AV LLIDV +ISAA+ ++R P D+P SK+
Sbjct: 128 ADTAVGLLIDVFRRISAANRFVKQRFWPLKGDYPLGSKV 166
>AT1G72190.1 | Symbols: | D-isomer specific 2-hydroxyacid
dehydrogenase family protein | chr1:27167458-27169696
REVERSE LENGTH=373
Length = 373
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 129/281 (45%), Gaps = 25/281 (8%)
Query: 14 HLPKVLLYGPPSLSSI------IKPHPSHNFQILN-QFLPTHASSIHAVVTTDVSFLVNA 66
H+ +VL GP S ++P+P +++ + +P + H V ++ +++
Sbjct: 50 HVTRVLFCGPHFPDSYNFTREYLQPYPFIKVDVVHYRDVPEVIKNYHICVA--MTMQMDS 107
Query: 67 DLIGLLPSLRLVVTGSAGTDHVDLSECRRRGIQVA---SAGNLYSDDVADLAVALLIDVT 123
++I +++L++ G D VD+ + GI+VA S G + +++A+ L++ +
Sbjct: 108 NVISRASNIKLIMQYGVGLDGVDIDAATKHGIKVARIPSEGTGNAASCSEMAIYLMLGLL 167
Query: 124 WKISAADTNFRRRLQPPSWDFPSSSKLAXXXXXXXXXXXXXXEVAKRLEAFGCTILYNSR 183
K + + R RL P+ L E+AKRL+ FG ++ R
Sbjct: 168 KKQNEMQISLRNRLLGE----PTGDTLLGKTVFILGYGNIGIELAKRLKPFGSRVIATKR 223
Query: 184 ---------NKKPFVSYPFYSSVVELASNSNVLVLCCDLNDQTKHIINREAMLALGKEGI 234
+ + + + A ++++V+C LN +T I+N+E + ++ K +
Sbjct: 224 FWPASIVDSDSRLVDEKGSHEDIYTFAGKADIVVVCLRLNKETAEIVNKEFICSMKKGAL 283
Query: 235 IVNVGRGSLIDERELLKCLMEGEIRGAGLDVFENEPQVPKE 275
+VN+ RG LI+ + L G + G G+DV +EP P +
Sbjct: 284 LVNIARGGLINYESAFQNLESGHLGGLGIDVAWSEPFDPND 324
>AT5G14780.1 | Symbols: FDH | formate dehydrogenase |
chr5:4777043-4779190 FORWARD LENGTH=384
Length = 384
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 106/244 (43%), Gaps = 21/244 (8%)
Query: 45 LPTHASSIHAVVTTDVS-FLVNADLIGLLPSLRLVVTGSAGTDHVDLSECRRRGIQVASA 103
L H +H +++T V A+ I +L+L++T G+DH+DL G+ VA
Sbjct: 89 LEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEV 148
Query: 104 GNLYSDDVADLAVALLIDVTWKISAADTNF---RRRLQPPSWDFPSSSKLAXXXXXXXXX 160
V++ D +I NF ++ W+ + A
Sbjct: 149 -------TGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIG 201
Query: 161 XXXXXEVAK----RLEAFGCTILYNSRNK-----KPFVSYPFYSSVVELASNSNVLVLCC 211
+ K RL+ FGC +LY+ R + + F + E+ +V+V+
Sbjct: 202 TVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINM 261
Query: 212 DLNDQTKHIINREAMLALGKEGIIVNVGRGSLIDERELLKCLMEGEIRGAGLDVFENEPQ 271
L ++T+ + N+E + L K +IVN RG++++ + ++ + G I G DV++ +P
Sbjct: 262 PLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQP- 320
Query: 272 VPKE 275
PK+
Sbjct: 321 APKD 324
>AT1G68010.1 | Symbols: HPR, ATHPR1 | hydroxypyruvate reductase |
chr1:25493418-25495720 FORWARD LENGTH=386
Length = 386
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 170 RLEAFGCTI--LYNSRNKKPFVSYPFYSSVVELASNSNVLVLCCDLNDQTKHIINREAML 227
RLE F + ++P V++ SS+ E+ ++++ L L+ T H++N+E +
Sbjct: 202 RLEKFVTAYGQFLKANGEQP-VTWKRASSMEEVLREADLISLHPVLDKTTYHLVNKERLA 260
Query: 228 ALGKEGIIVNVGRGSLIDERELLKCLMEGEIRGAGLDVFENEP 270
+ KE I+VN RG +IDE L++ L E + GLDVFE EP
Sbjct: 261 MMKKEAILVNCSRGPVIDEAALVEHLKENPMFRVGLDVFEEEP 303
>AT3G19480.1 | Symbols: | D-3-phosphoglycerate dehydrogenase |
chr3:6752590-6754650 FORWARD LENGTH=588
Length = 588
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 89/206 (43%), Gaps = 15/206 (7%)
Query: 76 RLVVTGSAGT--DHVDLSECRRRGIQVASAGNLYSDDVADLAVALLIDVTWKISAADTNF 133
RL V G AG D+VDL+ G V +A + A+ +ALL + I+ AD +
Sbjct: 109 RLKVVGRAGVGIDNVDLAAATEYGCLVVNAPTANTVAAAEHGIALLTAMARNIAQADAS- 167
Query: 134 RRRLQPPSWDFPS--SSKLAXXXXXXXXXXXXXXEVAKRLEAFGCTIL----YNSRNKKP 187
++ W L EVA+R G ++ Y ++
Sbjct: 168 ---IKAGKWTRNKYVGVSLVGKTLAVLGFGKVGSEVARRARGLGMHVITHDPYAPADRAR 224
Query: 188 FVSYPFYSSVVELASNSNVLVLCCDLNDQTKHIINREAMLALGKEGI-IVNVGRGSLIDE 246
+ S V + S ++ + L L T ++N + A+ K+G+ IVNV RG +IDE
Sbjct: 225 AIGVELVSFEVAI-STADFISLHLPLTAATSKMMN-DVTFAMMKKGVRIVNVARGGVIDE 282
Query: 247 RELLKCLMEGEIRGAGLDVFENEPQV 272
LL+ L G + A LDVF EP V
Sbjct: 283 EALLRALDSGIVAQAALDVFTVEPPV 308
>AT1G17745.1 | Symbols: PGDH | D-3-phosphoglycerate dehydrogenase |
chr1:6101157-6104979 FORWARD LENGTH=624
Length = 624
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 85/203 (41%), Gaps = 13/203 (6%)
Query: 76 RLVVTGSAGT--DHVDLSECRRRGIQVASAGNLYSDDVADLAVALLIDVTWKISAADTNF 133
RL V G AG D+VDL G V +A + A+ +ALL + ++ AD +
Sbjct: 145 RLKVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQADAS- 203
Query: 134 RRRLQPPSWDFPS--SSKLAXXXXXXXXXXXXXXEVAKRLEAFGCTIL----YNSRNKKP 187
++ W+ L EVA+R + G T++ Y ++
Sbjct: 204 ---IKAGKWERSKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMTVISHDPYAPADRAR 260
Query: 188 FVSYPFYSSVVELASNSNVLVLCCDLNDQTKHIINREAMLALGKEGIIVNVGRGSLIDER 247
+ S + S ++ + L L TK + N E + K ++NV RG +IDE
Sbjct: 261 ALGVDLVS-FDQAISTADFVSLHMPLTPATKKVFNDETFSKMKKGVRLINVARGGVIDED 319
Query: 248 ELLKCLMEGEIRGAGLDVFENEP 270
L++ L G + A LDVF EP
Sbjct: 320 ALVRALDAGIVAQAALDVFCEEP 342
>AT4G34200.1 | Symbols: EDA9 | D-3-phosphoglycerate dehydrogenase |
chr4:16374041-16376561 REVERSE LENGTH=603
Length = 603
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 85/203 (41%), Gaps = 13/203 (6%)
Query: 76 RLVVTGSAGT--DHVDLSECRRRGIQVASAGNLYSDDVADLAVALLIDVTWKISAADTNF 133
RL V G AG D+VDLS G V +A + A+ +AL+ + ++ AD +
Sbjct: 124 RLKVVGRAGVGIDNVDLSAATEFGCLVVNAPTANTIAAAEHGIALMAAMARNVAQADAS- 182
Query: 134 RRRLQPPSWDFPS--SSKLAXXXXXXXXXXXXXXEVAKRLEAFGCTIL----YNSRNKKP 187
++ W L EVA+R + G ++ Y ++
Sbjct: 183 ---VKAGEWKRNKYVGVSLVGKTLAVLGFGKVGTEVARRAKGLGMRVIAHDPYAPADRAH 239
Query: 188 FVSYPFYSSVVELASNSNVLVLCCDLNDQTKHIINREAMLALGKEGIIVNVGRGSLIDER 247
+ S LA+ ++ + L L T I+N E + K IVNV RG +IDE
Sbjct: 240 AIGVDLVSFDEALAT-ADFISLHMPLTPTTSKILNDETFAKMKKGVRIVNVARGGVIDED 298
Query: 248 ELLKCLMEGEIRGAGLDVFENEP 270
L++ L G + A LDVF EP
Sbjct: 299 ALVRALDAGIVAQAALDVFTKEP 321
>AT1G68010.2 | Symbols: HPR | hydroxypyruvate reductase |
chr1:25493418-25495720 FORWARD LENGTH=387
Length = 387
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 170 RLEAFGCTI--LYNSRNKKPFVSYPFYSSVVELASNSNVLVLCCDLNDQTKHIINREAML 227
RLE F + ++P V++ SS+ E+ ++++ L L+ T H++N+E +
Sbjct: 202 RLEKFVTAYGQFLKANGEQP-VTWKRASSMEEVLREADLISLHPVLDKTTYHLVNKERLA 260
Query: 228 ALGK-EGIIVNVGRGSLIDERELLKCLMEGEIRGAGLDVFENEP 270
+ K E I+VN RG +IDE L++ L E + GLDVFE EP
Sbjct: 261 MMKKVEAILVNCSRGPVIDEAALVEHLKENPMFRVGLDVFEEEP 304