Miyakogusa Predicted Gene

Lj3g3v2720020.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2720020.1 Non Chatacterized Hit- tr|C0JP16|C0JP16_LOTJA
Putative basic helix-loop-helix protein BHLH11 OS=Lotu,100,0,seg,NULL;
HLH,Helix-loop-helix domain; STEROL REGULATORY ELEMENT-BINDING
PROTEIN,NULL; coiled-coil,N,CUFF.44476.1
         (428 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G21330.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   212   4e-55
AT3G50330.1 | Symbols: HEC2 | basic helix-loop-helix (bHLH) DNA-...   100   3e-21
AT5G67060.1 | Symbols: HEC1 | basic helix-loop-helix (bHLH) DNA-...    98   1e-20
AT5G09750.1 | Symbols: HEC3 | basic helix-loop-helix (bHLH) DNA-...    92   6e-19
AT4G00120.1 | Symbols: IND1, GT140, IND, EDA33 | basic helix-loo...    88   9e-18
AT5G01310.1 | Symbols: APTX | APRATAXIN-like | chr5:125304-12896...    65   8e-11
AT5G43175.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    55   1e-07
AT1G66470.1 | Symbols: RHD6 | ROOT HAIR DEFECTIVE6 | chr1:247953...    54   3e-07
AT5G37800.1 | Symbols: RSL1, ATRSL1 | RHD SIX-LIKE 1 | chr5:1503...    53   3e-07
AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 | chr...    53   4e-07
AT2G14760.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    52   6e-07
AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 | chr...    52   8e-07
AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 | chr4:15079489-1508...    52   9e-07
AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 | chr2:10319646-1032...    50   2e-06

>AT3G21330.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr3:7507720-7508841 FORWARD
           LENGTH=373
          Length = 373

 Score =  212 bits (540), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 137/280 (48%), Positives = 173/280 (61%), Gaps = 12/280 (4%)

Query: 140 SLDCLLSATNSNTDTSVEDD-GISMILPDCGNLWNFXXXXXXXXXXXXXXXXXXXTKNKH 198
           SLDCLLSAT+++ +TS EDD GIS++  DC  LW+F                   T    
Sbjct: 87  SLDCLLSATSNSNNTSTEDDEGISVLFSDCQTLWSFGGVSSAESENREITTETTTTIKPK 146

Query: 199 MEFQVNEPVQTVSQSSSDQLKPK--RRNNQSSDDQYFTML--ENSPIEGGFRLI-SENPP 253
              +        +++++   KPK  +RN       +F+++  ++   +GGF+LI  EN  
Sbjct: 147 PLKRNRGGDGGTTETTTTTTKPKSLKRNRGDETGSHFSLVHPQDDSEKGGFKLIYDENQS 206

Query: 254 KCKKPRWEKGSCSSSNINFQQPNSSSSIEEPDPEAIAQMKEMIYRAAAFRPVSLLGLEEV 313
           K KKPR EK    SSNI+FQ     S   EPD EAIAQMKEMIYRAAAFRPV+  GLE +
Sbjct: 207 KSKKPRTEKERGGSSNISFQHSTCLSDNVEPDAEAIAQMKEMIYRAAAFRPVNF-GLE-I 264

Query: 314 AEKPKRKNVKISSDPQTVAAXXXXXXXXXXXXVLQKIVPGGSKMDTASMLDEAANYLKFL 373
            EKPKRKNVKIS+DPQTVAA            VLQ +VPGG+KMDTASMLDEAANYLKFL
Sbjct: 265 VEKPKRKNVKISTDPQTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFL 324

Query: 374 RSQVKALESLGNKVS-TAMDYCS-PSSIAFSFNPSF-PMQ 410
           R+QVKALE+L  K+  T + + S P+S    F+PSF P+Q
Sbjct: 325 RAQVKALENLRPKLDQTNLSFSSAPTSFPL-FHPSFLPLQ 363


>AT3G50330.1 | Symbols: HEC2 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:18657423-18658118
           REVERSE LENGTH=231
          Length = 231

 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/119 (47%), Positives = 78/119 (65%), Gaps = 8/119 (6%)

Query: 269 NINFQ-QPNSSSSIEEP-----DPEAIAQMKEMIYRAAAFRPVSLLGLEEVAEKPKRKNV 322
            +NF+  P+ SSS+ E      D   +A M+EMI+R A  +P+ +    E  + PKRKNV
Sbjct: 66  GLNFRYAPSPSSSLPEKRGGCSDNANMAAMREMIFRIAVMQPIHID--PESVKPPKRKNV 123

Query: 323 KISSDPQTVAAXXXXXXXXXXXXVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALE 381
           +IS DPQ+VAA            +LQ++VPGG+KMDTASMLDEA +Y+KFL+ QV++LE
Sbjct: 124 RISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLE 182


>AT5G67060.1 | Symbols: HEC1 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr5:26766276-26767001
           FORWARD LENGTH=241
          Length = 241

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/93 (50%), Positives = 66/93 (70%), Gaps = 2/93 (2%)

Query: 289 IAQMKEMIYRAAAFRPVSLLGLEEVAEKPKRKNVKISSDPQTVAAXXXXXXXXXXXXVLQ 348
           +A M+EMI+R A  +P+ +    E  + PKR+NV+IS DPQ+VAA            +LQ
Sbjct: 95  MAAMREMIFRIAVMQPIHID--PEAVKPPKRRNVRISKDPQSVAARHRRERISERIRILQ 152

Query: 349 KIVPGGSKMDTASMLDEAANYLKFLRSQVKALE 381
           ++VPGG+KMDTASMLDEA +Y+KFL+ QV++LE
Sbjct: 153 RLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLE 185


>AT5G09750.1 | Symbols: HEC3 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr5:3026401-3027075
           REVERSE LENGTH=224
          Length = 224

 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 62/92 (67%), Gaps = 2/92 (2%)

Query: 289 IAQMKEMIYRAAAFRPVSLLGLEEVAEKPKRKNVKISSDPQTVAAXXXXXXXXXXXXVLQ 348
           +  MKEM+Y+ AA + V +       +KPKR+NV+IS DPQ+VAA            +LQ
Sbjct: 92  LGAMKEMMYKIAAMQSVDID--PATVKKPKRRNVRISDDPQSVAARHRRERISERIRILQ 149

Query: 349 KIVPGGSKMDTASMLDEAANYLKFLRSQVKAL 380
           ++VPGG+KMDTASMLDEA  Y+KFL+ Q++ L
Sbjct: 150 RLVPGGTKMDTASMLDEAIRYVKFLKRQIRLL 181


>AT4G00120.1 | Symbols: IND1, GT140, IND, EDA33 | basic
           helix-loop-helix (bHLH) DNA-binding superfamily protein
           | chr4:42601-43197 REVERSE LENGTH=198
          Length = 198

 Score = 88.2 bits (217), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 56/90 (62%), Gaps = 2/90 (2%)

Query: 292 MKEMIYRAAAFRPVSLLGLEEVAEKPKRKNVKISSDPQTVAAXXXXXXXXXXXXVLQKIV 351
           MKEM Y  A  +PV +        KP R+NV+IS DPQTV A            +L++IV
Sbjct: 88  MKEMQYMIAVMQPVDID--PATVPKPNRRNVRISDDPQTVVARRRRERISEKIRILKRIV 145

Query: 352 PGGSKMDTASMLDEAANYLKFLRSQVKALE 381
           PGG+KMDTASMLDEA  Y KFL+ QV+ L+
Sbjct: 146 PGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175


>AT5G01310.1 | Symbols: APTX | APRATAXIN-like | chr5:125304-128960
           FORWARD LENGTH=912
          Length = 912

 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 41/62 (66%)

Query: 316 KPKRKNVKISSDPQTVAAXXXXXXXXXXXXVLQKIVPGGSKMDTASMLDEAANYLKFLRS 375
           K  R    +S+DPQ+VAA            +LQ +VPGG+KMDT SMLDEA +Y+KFL++
Sbjct: 35  KRSRSTSTLSTDPQSVAARDRRHRISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKA 94

Query: 376 QV 377
           Q+
Sbjct: 95  QI 96


>AT5G43175.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr5:17334261-17335234 FORWARD
           LENGTH=223
          Length = 223

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 42/68 (61%)

Query: 315 EKPKRKNVKISSDPQTVAAXXXXXXXXXXXXVLQKIVPGGSKMDTASMLDEAANYLKFLR 374
           ++  + N  I+SDPQ++ A             LQ +VP G+K+D ++ML++A +Y+KFL+
Sbjct: 129 KRKAKANRGIASDPQSLYARKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQ 188

Query: 375 SQVKALES 382
            Q+K L S
Sbjct: 189 LQIKLLSS 196


>AT1G66470.1 | Symbols: RHD6 | ROOT HAIR DEFECTIVE6 |
           chr1:24795326-24796598 FORWARD LENGTH=298
          Length = 298

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%)

Query: 313 VAEKPKRKNVKISSDPQTVAAXXXXXXXXXXXXVLQKIVPGGSKMDTASMLDEAANYLKF 372
           V  K K K      DPQ++AA            +LQ++VP G+K+D  +ML++A +Y+KF
Sbjct: 190 VTGKTKPKPTTSPKDPQSLAAKNRRERISERLKILQELVPNGTKVDLVTMLEKAISYVKF 249

Query: 373 LRSQVKALES 382
           L+ QVK L +
Sbjct: 250 LQVQVKVLAT 259


>AT5G37800.1 | Symbols: RSL1, ATRSL1 | RHD SIX-LIKE 1 |
           chr5:15036197-15037574 FORWARD LENGTH=307
          Length = 307

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%)

Query: 327 DPQTVAAXXXXXXXXXXXXVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKAL 380
           DPQ++AA            VLQ++VP G+K+D  +ML++A  Y+KFL+ QVK L
Sbjct: 210 DPQSLAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQVQVKVL 263


>AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
           chr4:16239566-16241052 REVERSE LENGTH=352
          Length = 352

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 40/64 (62%)

Query: 319 RKNVKISSDPQTVAAXXXXXXXXXXXXVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVK 378
           R +   ++DPQ++ A            +LQ +VP G+K+D ++ML+EA +Y+KFL+ Q+K
Sbjct: 267 RASRGAATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIK 326

Query: 379 ALES 382
            L S
Sbjct: 327 LLSS 330


>AT2G14760.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:6321840-6323312 REVERSE
           LENGTH=328
          Length = 328

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 39/64 (60%)

Query: 319 RKNVKISSDPQTVAAXXXXXXXXXXXXVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVK 378
           R +   ++DPQ++ A            +LQ +VP G+K+D ++ML+EA  Y+KFL+ Q+K
Sbjct: 238 RASRGAATDPQSLYARKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQLQIK 297

Query: 379 ALES 382
            L S
Sbjct: 298 LLSS 301


>AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 |
           chr1:9654753-9655806 FORWARD LENGTH=258
          Length = 258

 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 38/64 (59%)

Query: 319 RKNVKISSDPQTVAAXXXXXXXXXXXXVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVK 378
           R     ++DPQ++ A             LQ +VP G+K+D ++ML+EA +Y+KFL+ Q+K
Sbjct: 168 RATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQIK 227

Query: 379 ALES 382
            L S
Sbjct: 228 LLSS 231


>AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 |
           chr4:15079489-15081606 REVERSE LENGTH=310
          Length = 310

 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 3/78 (3%)

Query: 316 KPK-RKNVKISSDPQTVAAXXXXXXXXXXXXVLQKIVPGGSKMDTASMLDEAANYLKFLR 374
           KPK R     ++DP ++A              LQ++VP G+K D ASMLDE  +Y+KFL+
Sbjct: 127 KPKVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFLQ 186

Query: 375 SQVKAL--ESLGNKVSTA 390
            QVK L    LG   S +
Sbjct: 187 LQVKVLSMSRLGGAASAS 204


>AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 |
           chr2:10319646-10322177 REVERSE LENGTH=350
          Length = 350

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 34/56 (60%)

Query: 325 SSDPQTVAAXXXXXXXXXXXXVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKAL 380
           ++DP ++A              LQ++VP G+K D ASMLDE  +Y+KFL+ QVK L
Sbjct: 145 ATDPHSIAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVL 200