Miyakogusa Predicted Gene

Lj3g3v2718810.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2718810.1 tr|G7IHW5|G7IHW5_MEDTR 23S rRNA
(Uracil-5-)-methyltransferase rumA OS=Medicago truncatula
GN=MTR_2g1,92.11,0,seg,NULL; TRNA (URACIL-5-)-METHYLTRANSFERASE,NULL;
RNA M5U METHYLTRANSFERASE FAMILY,NULL; S-adenosyl,CUFF.44478.1
         (267 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G21300.1 | Symbols:  | RNA methyltransferase family protein |...   430   e-121
AT2G28450.1 | Symbols:  | zinc finger (CCCH-type) family protein...    79   3e-15
AT2G28450.2 | Symbols:  | zinc finger (CCCH-type) family protein...    79   3e-15

>AT3G21300.1 | Symbols:  | RNA methyltransferase family protein |
           chr3:7493654-7496257 REVERSE LENGTH=554
          Length = 554

 Score =  430 bits (1106), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/267 (80%), Positives = 235/267 (88%)

Query: 1   MLRSGRDVTTDLPELMVNFVTSSYKPELLKPLVDKVSAFPEVVSIMXXXXXXXXXXXXXE 60
           MLR+GR+V T   ELMVNFVTSSYKPELLKPLVD++S+ P+VVSIM             E
Sbjct: 288 MLRTGRNVETGSLELMVNFVTSSYKPELLKPLVDRISSIPQVVSIMNNVNSSVGNTSVGE 347

Query: 61  EEYTLYGKSNITETLRGLTFQISANSFFQTNTSQAEVLYKLIEECAGVRGDGSEIVLDLF 120
           +EYTLYGK  ITE LRGLTFQISANSFFQTNT QAEVLYKLIEE AG++GDGSE+VLDLF
Sbjct: 348 KEYTLYGKDTITEVLRGLTFQISANSFFQTNTHQAEVLYKLIEESAGLKGDGSEVVLDLF 407

Query: 121 CGTGTIGLTLARSARHVYGYEVVPQAIADARLNAKINGIQNATFVQGDLNKIDENFGRSF 180
           CGTGTIGLTLAR A+HVYGYEVVPQAI DA  NA+INGI+NATF+QGDLNKI E+FG +F
Sbjct: 408 CGTGTIGLTLARRAKHVYGYEVVPQAITDAHKNAQINGIENATFIQGDLNKIGEDFGNNF 467

Query: 181 PKPDIVISDPNRPGMHMKLIKFLLNLKAPRIVYVSCNPATCARDLDYLCHGVAELNLKGC 240
           PKPDIVISDPNRPGMHMKLIKFLL LK+PRI+YVSCNPATCARDLDYLCHGV E NLKGC
Sbjct: 468 PKPDIVISDPNRPGMHMKLIKFLLKLKSPRIIYVSCNPATCARDLDYLCHGVEEKNLKGC 527

Query: 241 YKLLSLQPVDMFPHTPHIECVCLLELS 267
           YKL+S+QPVDMFPHTPHIECVCLLEL+
Sbjct: 528 YKLMSVQPVDMFPHTPHIECVCLLELA 554


>AT2G28450.1 | Symbols:  | zinc finger (CCCH-type) family protein |
           chr2:12162180-12165761 REVERSE LENGTH=809
          Length = 809

 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 60/106 (56%), Gaps = 2/106 (1%)

Query: 60  EEEYTLYGKSNITETLRGLTFQISANSFFQTNTSQAEVLYKLIEECAGVRGDGSEIVLDL 119
           E+   +  ++ I + +  L F IS  +FFQ NT  AE LY +  + A +  D   ++ D+
Sbjct: 507 EQTTNVLTEARIHDHINNLRFSISPTAFFQVNTVTAEKLYSIAGDWADLGPD--TLLFDV 564

Query: 120 FCGTGTIGLTLARSARHVYGYEVVPQAIADARLNAKINGIQNATFV 165
            CGTGTIGLTLA     V G E+   A+ADA  NA INGI N  F+
Sbjct: 565 CCGTGTIGLTLAHRVGMVIGIEMNASAVADAERNATINGISNCKFI 610



 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 28/109 (25%)

Query: 185 IVISDPNRPGMHMKLIKFL-LNLKAPRIVYVSCNPATCARDLDYLC-------------- 229
           + I DP R G+H  +IK L  + +  R+VY+SCNP T   +   LC              
Sbjct: 700 VAIVDPPRSGLHPAVIKALRTHPRLKRLVYISCNPETLVANAIELCTPSFDEPDRGNKNY 759

Query: 230 -------------HGVAELNLKGCYKLLSLQPVDMFPHTPHIECVCLLE 265
                        H    +     ++ +    VD+FPHT H E V LLE
Sbjct: 760 RGRKKIGIAALARHRAKSMPTSEAFRPVKAMAVDLFPHTDHCEMVMLLE 808


>AT2G28450.2 | Symbols:  | zinc finger (CCCH-type) family protein |
           chr2:12162180-12165761 REVERSE LENGTH=804
          Length = 804

 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 60/106 (56%), Gaps = 2/106 (1%)

Query: 60  EEEYTLYGKSNITETLRGLTFQISANSFFQTNTSQAEVLYKLIEECAGVRGDGSEIVLDL 119
           E+   +  ++ I + +  L F IS  +FFQ NT  AE LY +  + A +  D   ++ D+
Sbjct: 507 EQTTNVLTEARIHDHINNLRFSISPTAFFQVNTVTAEKLYSIAGDWADLGPD--TLLFDV 564

Query: 120 FCGTGTIGLTLARSARHVYGYEVVPQAIADARLNAKINGIQNATFV 165
            CGTGTIGLTLA     V G E+   A+ADA  NA INGI N  F+
Sbjct: 565 CCGTGTIGLTLAHRVGMVIGIEMNASAVADAERNATINGISNCKFI 610