Miyakogusa Predicted Gene
- Lj3g3v2704600.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2704600.1 tr|I1KGF2|I1KGF2_SOYBN Ubiquitin
carboxyl-terminal hydrolase OS=Glycine max PE=3 SV=1,84.65,0,Cysteine
proteinases,NULL; Ubiquitin-like,NULL; seg,NULL; UBIQUITIN_1,Ubiquitin
conserved site; UCH_,CUFF.44458.1
(509 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G51710.1 | Symbols: UBP6, ATUBP6 | ubiquitin-specific proteas... 683 0.0
AT3G21280.1 | Symbols: UBP7 | ubiquitin-specific protease 7 | ch... 681 0.0
AT1G51710.2 | Symbols: UBP6 | ubiquitin-specific protease 6 | ch... 603 e-173
AT4G10570.1 | Symbols: UBP9 | ubiquitin-specific protease 9 | ch... 57 3e-08
AT4G10590.1 | Symbols: UBP10 | ubiquitin-specific protease 10 | ... 57 3e-08
AT4G10590.2 | Symbols: UBP10 | ubiquitin-specific protease 10 | ... 57 3e-08
AT2G40930.1 | Symbols: UBP5, ATUBP5, PDE323 | ubiquitin-specific... 54 3e-07
AT1G32850.1 | Symbols: UBP11 | ubiquitin-specific protease 11 | ... 52 1e-06
AT5G22030.1 | Symbols: UBP8 | ubiquitin-specific protease 8 | ch... 50 3e-06
AT5G22030.2 | Symbols: UBP8 | ubiquitin-specific protease 8 | ch... 50 3e-06
AT4G39910.1 | Symbols: ATUBP3, UBP3 | ubiquitin-specific proteas... 50 3e-06
>AT1G51710.1 | Symbols: UBP6, ATUBP6 | ubiquitin-specific protease 6
| chr1:19175805-19179894 REVERSE LENGTH=482
Length = 482
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/508 (65%), Positives = 377/508 (74%), Gaps = 27/508 (5%)
Query: 1 MITVSVKWQKELFKDVEIDTTQPPYVFKCQLFDLTGVPPERQKIMVKGGLLKDDANWSTL 60
M TVSVKWQK++ +EID + PPYVFK QL+DLTGVPPERQKIMVKGGLLKDD +W+ +
Sbjct: 1 MPTVSVKWQKKVLDGIEIDVSLPPYVFKAQLYDLTGVPPERQKIMVKGGLLKDDGDWAAI 60
Query: 61 GVKEGQKLMMMGTVDEIVKSPEKGTVFVEDLPEEEQVAAVGHTAGLFNLGNTCYMNSTLQ 120
GVK+GQKLMMMGT DEIVK+PEK VF EDLPEE +G++AGL NLGNTCYMNST+Q
Sbjct: 61 GVKDGQKLMMMGTADEIVKAPEKAIVFAEDLPEEALATNLGYSAGLVNLGNTCYMNSTVQ 120
Query: 121 CLHSVPELKSALIDYSQSGRNTDVDQSSHMLTIATRDLFNELDKSVKPVAPMQFWMVLRK 180
CL SVPELKSAL +YS + R+ DVDQ+SHMLT+ATR+LF ELD+SV V+P QFWMVLRK
Sbjct: 121 CLKSVPELKSALSNYSLAARSNDVDQTSHMLTVATRELFGELDRSVNAVSPSQFWMVLRK 180
Query: 181 KYPQFAQLHNGVFMQQDAEECWXXXXXXXXXXXXXPGSSENLDAVKANFGIGLISRTYCQ 240
KYPQF+QL NG+ MQQDAEECW P SSE DAVKA FG+ L SR +CQ
Sbjct: 181 KYPQFSQLQNGMHMQQDAEECWTQLLYTLSQSLKAPTSSEGADAVKALFGVNLQSRLHCQ 240
Query: 241 XXXXXXXXXXXXXXLKCHISQEVNHLHEGLKHGLKSELEKASPVLGRSAIYLKESHINAL 300
LKCHIS EVNHLHEGLKHGLK ELEK SP LGR+A+Y+KES I++L
Sbjct: 241 ESGEESSETESVYSLKCHISHEVNHLHEGLKHGLKGELEKTSPALGRTALYVKESLIDSL 300
Query: 301 PRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDVYDLCSEDLRKKLETPRQILRNXXXX 360
PRYLTVQFVRFFWKRESNQKAKILRKVDYPL LD++DLCSEDLRKKLE PRQ LR
Sbjct: 301 PRYLTVQFVRFFWKRESNQKAKILRKVDYPLVLDIFDLCSEDLRKKLEAPRQKLREEEGK 360
Query: 361 XXXXXXXXXSAVHKENDVKMSDAEGSSNGGGEPSVAPMEEGKNLQHSTAKXXXXXXXXXX 420
S K++DVKM+DAE S+NG GE S +EG
Sbjct: 361 KLGLQTSAKSG-SKDSDVKMTDAEASANGSGESSTVNPQEG------------------- 400
Query: 421 XXXXXILCAGEKETQMTGVYDLVAVLTHKGRSADSGHYVGWVKQENGKWIEFDDDNPKPR 480
+ EKET MTG+YDLVAVLTHKGRSADSGHYV WVKQE+GKWI++DDDNP +
Sbjct: 401 -------TSSEKETHMTGIYDLVAVLTHKGRSADSGHYVAWVKQESGKWIQYDDDNPSMQ 453
Query: 481 LEEDITKLSGGGDWHMAYIIMYKARVVS 508
EEDITKLSGGGDWHMAYI MYKAR VS
Sbjct: 454 REEDITKLSGGGDWHMAYITMYKARFVS 481
>AT3G21280.1 | Symbols: UBP7 | ubiquitin-specific protease 7 |
chr3:7478166-7482037 REVERSE LENGTH=532
Length = 532
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/508 (65%), Positives = 385/508 (75%), Gaps = 32/508 (6%)
Query: 1 MITVSVKWQKELFKDVEIDTTQPPYVFKCQLFDLTGVPPERQKIMVKGGLLKDDANWSTL 60
M+TVSVKWQK++F+ +EIDT+QPP+VFK QL+DL+GVPPERQKIMVKGGLLKDDA+WSTL
Sbjct: 56 MLTVSVKWQKKVFESIEIDTSQPPFVFKAQLYDLSGVPPERQKIMVKGGLLKDDADWSTL 115
Query: 61 GVKEGQKLMMMGTVDEIVKSPEKGTVFVEDLPEEEQVAAVGHTAGLFNLGNTCYMNSTLQ 120
G+K GQKLMMMGT DEIVK+PEKG VF+EDLPEE+Q A +G++AGL NLGNTCYMNST+Q
Sbjct: 116 GLKNGQKLMMMGTADEIVKAPEKGPVFMEDLPEEQQAANLGYSAGLVNLGNTCYMNSTMQ 175
Query: 121 CLHSVPELKSALIDYSQSGRNTDVDQSSHMLTIATRDLFNELDKSVKPVAPMQFWMVLRK 180
CL SVPELKS L +Y QS R DVDQ+SHMLT+ATR+LF+ELDKSVK VAPM FWMVL+K
Sbjct: 176 CLISVPELKSELSNY-QSARTKDVDQTSHMLTVATRELFSELDKSVKAVAPMPFWMVLQK 234
Query: 181 KYPQFAQLHNGVFMQQDAEECWXXXXXXXXXXXXXPGSSENLDAVKANFGIGLISRTYCQ 240
KYPQFAQLHNG MQQDAEECW P SE+ DAVKA FG+ L++R +CQ
Sbjct: 235 KYPQFAQLHNGNHMQQDAEECWTQMLYTLSQSLKLPSPSEDPDAVKALFGLNLLNRLHCQ 294
Query: 241 XXXXXXXXXXXXXXLKCHISQEVNHLHEGLKHGLKSELEKASPVLGRSAIYLKESHINAL 300
LKCHIS EVNHLHEGLKHGLK ELEK SP LGR+A+Y+KES I++L
Sbjct: 295 ESSEESSETESVFSLKCHISHEVNHLHEGLKHGLKGELEKTSPSLGRTAVYVKESLIDSL 354
Query: 301 PRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDVYDLCSEDLRKKLETPRQILRNXXXX 360
PRYLTVQFVRFFWKRESNQKAKILRKVDYPLELD+YDLCSEDLRKKLE PRQ LR+
Sbjct: 355 PRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDIYDLCSEDLRKKLEAPRQKLRDIEGQ 414
Query: 361 XXXXXXXXXSAVHKENDVKMSDAEGSSNGGGEPSVAPMEEGKNLQHSTAKXXXXXXXXXX 420
S+ K +DVKM+DAEGSSN GE S +EG +
Sbjct: 415 KLGLQASAKSS-SKGDDVKMTDAEGSSNQSGESSTGDQQEGAS----------------- 456
Query: 421 XXXXXILCAGEKETQMTGVYDLVAVLTHKGRSADSGHYVGWVKQENGKWIEFDDDNPKPR 480
MTG+YDLV+VLTHKGRSADSGHYV WVKQE+GKW+++DD N +
Sbjct: 457 -------------PHMTGIYDLVSVLTHKGRSADSGHYVAWVKQESGKWVQYDDANTSLQ 503
Query: 481 LEEDITKLSGGGDWHMAYIIMYKARVVS 508
EDI KLSGGGDWHMAYI+MYKAR++S
Sbjct: 504 RGEDIIKLSGGGDWHMAYIVMYKARLIS 531
>AT1G51710.2 | Symbols: UBP6 | ubiquitin-specific protease 6 |
chr1:19175805-19179399 REVERSE LENGTH=443
Length = 443
Score = 603 bits (1555), Expect = e-173, Method: Compositional matrix adjust.
Identities = 294/459 (64%), Positives = 335/459 (72%), Gaps = 27/459 (5%)
Query: 50 LLKDDANWSTLGVKEGQKLMMMGTVDEIVKSPEKGTVFVEDLPEEEQVAAVGHTAGLFNL 109
L++DD +W+ +GVK+GQKLMMMGT DEIVK+PEK VF EDLPEE +G++AGL NL
Sbjct: 11 LMQDDGDWAAIGVKDGQKLMMMGTADEIVKAPEKAIVFAEDLPEEALATNLGYSAGLVNL 70
Query: 110 GNTCYMNSTLQCLHSVPELKSALIDYSQSGRNTDVDQSSHMLTIATRDLFNELDKSVKPV 169
GNTCYMNST+QCL SVPELKSAL +YS + R+ DVDQ+SHMLT+ATR+LF ELD+SV V
Sbjct: 71 GNTCYMNSTVQCLKSVPELKSALSNYSLAARSNDVDQTSHMLTVATRELFGELDRSVNAV 130
Query: 170 APMQFWMVLRKKYPQFAQLHNGVFMQQDAEECWXXXXXXXXXXXXXPGSSENLDAVKANF 229
+P QFWMVLRKKYPQF+QL NG+ MQQDAEECW P SSE DAVKA F
Sbjct: 131 SPSQFWMVLRKKYPQFSQLQNGMHMQQDAEECWTQLLYTLSQSLKAPTSSEGADAVKALF 190
Query: 230 GIGLISRTYCQXXXXXXXXXXXXXXLKCHISQEVNHLHEGLKHGLKSELEKASPVLGRSA 289
G+ L SR +CQ LKCHIS EVNHLHEGLKHGLK ELEK SP LGR+A
Sbjct: 191 GVNLQSRLHCQESGEESSETESVYSLKCHISHEVNHLHEGLKHGLKGELEKTSPALGRTA 250
Query: 290 IYLKESHINALPRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDVYDLCSEDLRKKLET 349
+Y+KES I++LPRYLTVQFVRFFWKRESNQKAKILRKVDYPL LD++DLCSEDLRKKLE
Sbjct: 251 LYVKESLIDSLPRYLTVQFVRFFWKRESNQKAKILRKVDYPLVLDIFDLCSEDLRKKLEA 310
Query: 350 PRQILRNXXXXXXXXXXXXXSAVHKENDVKMSDAEGSSNGGGEPSVAPMEEGKNLQHSTA 409
PRQ LR S K++DVKM+DAE S+NG GE S +EG
Sbjct: 311 PRQKLREEEGKKLGLQTSAKSG-SKDSDVKMTDAEASANGSGESSTVNPQEG-------- 361
Query: 410 KXXXXXXXXXXXXXXXILCAGEKETQMTGVYDLVAVLTHKGRSADSGHYVGWVKQENGKW 469
+ EKET MTG+YDLVAVLTHKGRSADSGHYV WVKQE+GKW
Sbjct: 362 ------------------TSSEKETHMTGIYDLVAVLTHKGRSADSGHYVAWVKQESGKW 403
Query: 470 IEFDDDNPKPRLEEDITKLSGGGDWHMAYIIMYKARVVS 508
I++DDDNP + EEDITKLSGGGDWHMAYI MYKAR VS
Sbjct: 404 IQYDDDNPSMQREEDITKLSGGGDWHMAYITMYKARFVS 442
>AT4G10570.1 | Symbols: UBP9 | ubiquitin-specific protease 9 |
chr4:6523657-6528058 REVERSE LENGTH=923
Length = 923
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 101 GHTAGLFNLGNTCYMNSTLQCL-HSVPELKSALIDYSQSGRNTDVDQSSHMLTIATRDLF 159
G AGL NLGNTC+MNS LQCL H+ P ++ L DYS + L IA DL
Sbjct: 301 GGLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLL 360
Query: 160 NELDKSVK-PVAPMQFWMVLRKKYPQFAQLHNGVFMQQDAEE 200
+L S + VAP F L + PQF+ + Q D++E
Sbjct: 361 KKLWSSGRNAVAPRAFKTKLARFAPQFSG-----YNQHDSQE 397
>AT4G10590.1 | Symbols: UBP10 | ubiquitin-specific protease 10 |
chr4:6538919-6543272 REVERSE LENGTH=910
Length = 910
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 101 GHTAGLFNLGNTCYMNSTLQCL-HSVPELKSALIDYSQSGRNTDVDQSSHMLTIATRDLF 159
G AGL NLGNTC+MNS LQCL H+ P ++ L DYS + L IA DL
Sbjct: 300 GGLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLL 359
Query: 160 NELDKSVK-PVAPMQFWMVLRKKYPQFAQLHNGVFMQQDAEE 200
+L S + VAP F L + PQF+ + Q D++E
Sbjct: 360 KKLWSSGRNSVAPRAFKTKLARFAPQFSG-----YNQHDSQE 396
>AT4G10590.2 | Symbols: UBP10 | ubiquitin-specific protease 10 |
chr4:6538919-6543272 REVERSE LENGTH=910
Length = 910
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 101 GHTAGLFNLGNTCYMNSTLQCL-HSVPELKSALIDYSQSGRNTDVDQSSHMLTIATRDLF 159
G AGL NLGNTC+MNS LQCL H+ P ++ L DYS + L IA DL
Sbjct: 300 GGLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLL 359
Query: 160 NELDKSVK-PVAPMQFWMVLRKKYPQFAQLHNGVFMQQDAEE 200
+L S + VAP F L + PQF+ + Q D++E
Sbjct: 360 KKLWSSGRNSVAPRAFKTKLARFAPQFSG-----YNQHDSQE 396
>AT2G40930.1 | Symbols: UBP5, ATUBP5, PDE323 | ubiquitin-specific
protease 5 | chr2:17076714-17082192 REVERSE LENGTH=924
Length = 924
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 18/113 (15%)
Query: 97 VAAVGHTAGL---FNLGNTCYMNSTLQCLHSVPELKSALIDYSQSGRNTDVDQSSHM--- 150
V G TAGL NLGNTC+MNS +QCL PE S Y Q + +++ + +
Sbjct: 307 VTTRGSTAGLTGLLNLGNTCFMNSAIQCLVHTPEFAS----YFQEDYHQEINWQNPLGMV 362
Query: 151 --LTIATRDLFNEL-DKSVKPVAPMQFWMVLRKKYPQFAQLHNGVFMQQDAEE 200
L +A DL +L P+AP F L + PQF+ + Q D++E
Sbjct: 363 GELALAFGDLLRKLWAPGRTPIAPRPFKAKLARFAPQFSG-----YNQHDSQE 410
>AT1G32850.1 | Symbols: UBP11 | ubiquitin-specific protease 11 |
chr1:11902629-11906900 FORWARD LENGTH=892
Length = 892
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 17/104 (16%)
Query: 104 AGLFNLGNTCYMNSTLQCL-HSVPELKSALIDYSQSGRNTDVDQSSHM-----LTIATRD 157
GL NLGNTC+MNSTLQCL H+ P ++ L DY +D++ + + L IA +
Sbjct: 301 GGLQNLGNTCFMNSTLQCLAHTPPIVEYFLQDY-----RSDINAKNPLGMRGELAIAFGE 355
Query: 158 LFNELDKSVK-PVAPMQFWMVLRKKYPQFAQLHNGVFMQQDAEE 200
L +L S + VAP F L + PQF+ + Q D++E
Sbjct: 356 LLRKLWSSGQNTVAPRAFKTKLARFAPQFSG-----YNQHDSQE 394
>AT5G22030.1 | Symbols: UBP8 | ubiquitin-specific protease 8 |
chr5:7290155-7296344 REVERSE LENGTH=913
Length = 913
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 19/128 (14%)
Query: 84 GTVF-------VEDLPEEEQVAAVGHTAGLFNLGNTCYMNSTLQCLHSVPELKSALIDYS 136
GTVF + L + + +G T GL NLGNTC+MNS+LQCL P+L +
Sbjct: 295 GTVFRFGRSNSLSFLGKAGEAGTLGLT-GLQNLGNTCFMNSSLQCLAHTPKLVDFFL--G 351
Query: 137 QSGRNTDVDQSSHM---LTIATRDLFNEL-DKSVKPVAPMQFWMVLRKKYPQFAQLHNGV 192
+ + ++D M + +A DL L VAP F L + PQF+
Sbjct: 352 EYSKEINLDNPLGMKGEIALAFGDLLRSLWAPGASTVAPRTFKAKLARFAPQFSG----- 406
Query: 193 FMQQDAEE 200
F Q D++E
Sbjct: 407 FNQHDSQE 414
>AT5G22030.2 | Symbols: UBP8 | ubiquitin-specific protease 8 |
chr5:7290155-7296344 REVERSE LENGTH=913
Length = 913
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 19/128 (14%)
Query: 84 GTVF-------VEDLPEEEQVAAVGHTAGLFNLGNTCYMNSTLQCLHSVPELKSALIDYS 136
GTVF + L + + +G T GL NLGNTC+MNS+LQCL P+L +
Sbjct: 295 GTVFRFGRSNSLSFLGKAGEAGTLGLT-GLQNLGNTCFMNSSLQCLAHTPKLVDFFL--G 351
Query: 137 QSGRNTDVDQSSHM---LTIATRDLFNEL-DKSVKPVAPMQFWMVLRKKYPQFAQLHNGV 192
+ + ++D M + +A DL L VAP F L + PQF+
Sbjct: 352 EYSKEINLDNPLGMKGEIALAFGDLLRSLWAPGASTVAPRTFKAKLARFAPQFSG----- 406
Query: 193 FMQQDAEE 200
F Q D++E
Sbjct: 407 FNQHDSQE 414
>AT4G39910.1 | Symbols: ATUBP3, UBP3 | ubiquitin-specific protease 3
| chr4:18511858-18514139 REVERSE LENGTH=371
Length = 371
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 105 GLFNLGNTCYMNSTLQCLHSVPELKSALIDYSQSGRNTDVDQSSHMLTIATRDLFNELD- 163
G N GNTCY NS LQ L+ + L++Y S ++ + + M +A DLF+++
Sbjct: 24 GFENFGNTCYCNSVLQALYFCVPFREQLLEYYTSNKSVADAEENLMTCLA--DLFSQISS 81
Query: 164 --KSVKPVAPMQFWMVLRKKYPQFAQLHNGVFMQQDAEE 200
K +AP +F L+K+ F +M QDA E
Sbjct: 82 QKKKTGVIAPKRFVQRLKKQNELFRS-----YMHQDAHE 115