Miyakogusa Predicted Gene

Lj3g3v2693310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2693310.1 Non Chatacterized Hit- tr|E0VPJ7|E0VPJ7_PEDHC
Putative uncharacterized protein OS=Pediculus humanus ,26.19,3e-18,RNA
recognition motif,RNA recognition motif domain; RNA-binding domain,
RBD,NULL; RRM,RNA recognitio,CUFF.44440.1
         (267 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13700.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   312   1e-85
AT3G13700.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   283   8e-77
AT2G42240.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   157   5e-39
AT2G42240.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   152   2e-37
AT2G42240.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   149   2e-36
AT3G21215.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   123   2e-28

>AT3G13700.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:4490859-4492632 REVERSE LENGTH=287
          Length = 287

 Score =  312 bits (800), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 165/284 (58%), Positives = 193/284 (67%), Gaps = 19/284 (6%)

Query: 3   QQPFDPYFLYQ---------------QDERSNINTLFVSGLPDDVKAREIHNLFRRRPGF 47
            QP+DP+++YQ                DE   INTLFVSGLP+DVKAREIHNLFRRR GF
Sbjct: 4   HQPYDPFYVYQLHSHPHHLPPQLPLLADEPGAINTLFVSGLPNDVKAREIHNLFRRRHGF 63

Query: 48  DSCQLKYTGRANQVVAFATFFNHQSAMAALHALNGVKFDPQTGSVLHIELARSNSRRKRK 107
           +SCQLKYTGR +QVVAFATF +H+ A+AA++ LNGVKFDPQTGS LHIELARSNSRRK +
Sbjct: 64  ESCQLKYTGRGDQVVAFATFTSHRFALAAMNELNGVKFDPQTGSNLHIELARSNSRRKER 123

Query: 108 PGGGAYVVIDKRSKGETNVQXXXXXXXXXXXXXXXXXXXNHGDLAT-TQSGETAVGSDSA 166
           PG G YVVID R+K  +  Q                   +       T   E     DS 
Sbjct: 124 PGSGPYVVIDNRNKEISKSQDDQSDEGDSDPDEVQEPGNSDSPKENDTTKSEADSEPDSK 183

Query: 167 VPLGS---EQHEKGGGDGGPCSTLFIANLGPNCTEDELKQALSVYTGFNMVKMRSRGGMP 223
            P  +   E+  +GG     CSTLFIANLGPNCTEDELKQ LS Y GF+++K+R+RGGMP
Sbjct: 184 APSANGHLEKASEGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMP 243

Query: 224 VAFADFEEIDQATKVLEELQGSSLPSSDRGGMHIEYARSKMRKR 267
           VAFADFEEI+QAT  +  LQG+ L SSDRGGMHIEYARSKMRK+
Sbjct: 244 VAFADFEEIEQATDAMNHLQGNLLSSSDRGGMHIEYARSKMRKQ 287


>AT3G13700.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:4491008-4492632 REVERSE LENGTH=296
          Length = 296

 Score =  283 bits (724), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 158/293 (53%), Positives = 183/293 (62%), Gaps = 37/293 (12%)

Query: 3   QQPFDPYFLYQ---------------QDERSNINTLFVSGLPDDVKAREIHNLFRRRPGF 47
            QP+DP+++YQ                DE   INTLFVSGLP+DVKAREIHNLFRRR GF
Sbjct: 4   HQPYDPFYVYQLHSHPHHLPPQLPLLADEPGAINTLFVSGLPNDVKAREIHNLFRRRHGF 63

Query: 48  DSCQLKYTGRANQV------------------VAFATFFNHQSAMAALHALNGVKFDPQT 89
           +SCQLKYTGR +QV                  VAFATF +H+ A+AA++ LNGVKFDPQT
Sbjct: 64  ESCQLKYTGRGDQVCKNLQFLFFFIPIFRKAVVAFATFTSHRFALAAMNELNGVKFDPQT 123

Query: 90  GSVLHIELARSNSRRKRKPGGGAYVVIDKRSKGETNVQXXXXXXXXXXXXXXXXXXXNHG 149
           GS LHIELARSNSRRK +PG G YVVID R+K  +  Q                   +  
Sbjct: 124 GSNLHIELARSNSRRKERPGSGPYVVIDNRNKEISKSQDDQSDEGDSDPDEVQEPGNSDS 183

Query: 150 DLAT-TQSGETAVGSDSAVPLGSEQHEK---GGGDGGPCSTLFIANLGPNCTEDELKQAL 205
                T   E     DS  P  +   EK   GG     CSTLFIANLGPNCTEDELKQ L
Sbjct: 184 PKENDTTKSEADSEPDSKAPSANGHLEKASEGGSGARACSTLFIANLGPNCTEDELKQLL 243

Query: 206 SVYTGFNMVKMRSRGGMPVAFADFEEIDQATKVLEELQGSSLPSSDRGGMHIE 258
           S Y GF+++K+R+RGGMPVAFADFEEI+QAT  +  LQG+ L SSDRGGMHIE
Sbjct: 244 SRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLSSSDRGGMHIE 296


>AT2G42240.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr2:17596844-17598972 FORWARD LENGTH=292
          Length = 292

 Score =  157 bits (398), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 97/262 (37%), Positives = 136/262 (51%), Gaps = 30/262 (11%)

Query: 17  RSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAA 76
           R  + TLFV+GLP+DVK REI+NLFR  PG+++  L+ +  A +  AFA F + QSA+A 
Sbjct: 46  RDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRSSDGA-KPFAFAVFSDLQSAVAV 104

Query: 77  LHALNGVKFDPQTGSVLHIELARSNSRRKRKPGGGAYVVIDKRSKGETNVQXXXXXXXXX 136
           +HALNG+ FD +  S LHI+LA+SN + KR      +  + K     T  +         
Sbjct: 105 MHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDGWESLKKLKSWNTTTE--------- 155

Query: 137 XXXXXXXXXXNHGDLATTQSGETAVGSDSAVPLGSE----------QHEKGGGDGGPCST 186
                       G   T     +A  +    P  S+             K      PC T
Sbjct: 156 ---------SGFGSFQTPGMSSSAYNTIGYSPAQSQGIANVAGRAPTSRKPSKAADPCPT 206

Query: 187 LFIANLGPNCTEDELKQALSVYTGFNMVKMRSRGGMPVAFADFEEIDQATKVLEELQGSS 246
           LFIAN+GPNCTE EL Q  S   GF  +K++   G PVAF DF+++  +++ L  LQG+ 
Sbjct: 207 LFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGTV 266

Query: 247 LPSSDRGG-MHIEYARSKMRKR 267
           L SS  G  + ++YARS+M  R
Sbjct: 267 LYSSLTGEVLRLQYARSRMGMR 288


>AT2G42240.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr2:17596844-17598972 FORWARD LENGTH=289
          Length = 289

 Score =  152 bits (385), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 133/261 (50%), Gaps = 29/261 (11%)

Query: 17  RSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAA 76
           R  + TLFV+GLP+DVK REI+NLFR  PG+++  L+ +  A +  AFA F + QSA+A 
Sbjct: 46  RDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRSSDGA-KPFAFAVFSDLQSAVAV 104

Query: 77  LHALNGVKFDPQTGSVLHIELARSNSRRKRKPGGGAYVVIDKRSKGETNVQXXXXXXXXX 136
           +HALNG+ FD +  S LHI+LA+SN + KR      +  + K     T  +         
Sbjct: 105 MHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDGWESLKKLKSWNTTTE--------- 155

Query: 137 XXXXXXXXXXNHGDLATTQSGETAVGSDSAVPLGSE----------QHEKGGGDGGPCST 186
                       G   T     +A  +    P  S+             K      PC T
Sbjct: 156 ---------SGFGSFQTPGMSSSAYNTIGYSPAQSQGIANVAGRAPTSRKPSKAADPCPT 206

Query: 187 LFIANLGPNCTEDELKQALSVYTGFNMVKMRSRGGMPVAFADFEEIDQATKVLEELQGSS 246
           LFIAN+GPNCTE EL Q  S   GF  +K++   G PVAF DF+++  +++ L  LQG+ 
Sbjct: 207 LFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGTV 266

Query: 247 LPSSDRGGMHIEYARSKMRKR 267
           L SS  G +    +R  MRK+
Sbjct: 267 LYSSLTGEVLRLQSRMGMRKK 287


>AT2G42240.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr2:17596844-17598911 FORWARD LENGTH=302
          Length = 302

 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/237 (37%), Positives = 124/237 (52%), Gaps = 9/237 (3%)

Query: 17  RSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAA 76
           R  + TLFV+GLP+DVK REI+NLFR  PG+++  L+ +  A +  AFA F + QSA+A 
Sbjct: 46  RDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRSSDGA-KPFAFAVFSDLQSAVAV 104

Query: 77  LHALNGVKFDPQTGSVLHIELARSNSRRKRKPGGGAYVVIDKRSKGETNVQXXXXXXXXX 136
           +HALNG+ FD +  S LHI+LA+SN + KR      +  + K     T  +         
Sbjct: 105 MHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDGWESLKKLKSWNTTTESGFGSFQTP 164

Query: 137 XXXXXXXXXXNHGDLATTQSGETAVGSDSAVPLGSEQHEKGGGDGGPCSTLFIANLGPNC 196
                      +   A +Q      G        +    K      PC TLFIAN+GPNC
Sbjct: 165 GMSSSAYNTIGYSP-AQSQGIANVAGR-------APTSRKPSKAADPCPTLFIANMGPNC 216

Query: 197 TEDELKQALSVYTGFNMVKMRSRGGMPVAFADFEEIDQATKVLEELQGSSLPSSDRG 253
           TE EL Q  S   GF  +K++   G PVAF DF+++  +++ L  LQG+ L SS  G
Sbjct: 217 TEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGTVLYSSLTG 273


>AT3G21215.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:7442873-7445231 REVERSE LENGTH=339
          Length = 339

 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 122/266 (45%), Gaps = 26/266 (9%)

Query: 20  INTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHA 79
           + T+F++GLPDDVK RE+ NL R  PG+++ Q+ + G   + + FA F   Q AMAA   
Sbjct: 58  LRTIFIAGLPDDVKERELLNLLRWLPGYEASQVNFKGE--KPMGFALFSTAQFAMAAKDT 115

Query: 80  LNGVKFDPQTGSVLHIELARSN----------------SRRKRKPGGGAYVVIDKRSKGE 123
           L  + FD ++ SV+H E+A+ N                S+R R  G   + V        
Sbjct: 116 LQHMVFDAESKSVIHTEMAKKNLFVKRGIVGDSNAYDQSKRLRTGGDCTHSVYSPSPFHP 175

Query: 124 TNVQXXXXXXXXXXXXXXXXXXXN--HGDLATTQSGETAVGSDSAVPLGSEQHEKGGGDG 181
                                     H       +        S VP+ + +      D 
Sbjct: 176 PPPPVWGPPHGYMAPAPPPYDPYAGYHAPPVPMPTPPPIAAPSSYVPVQNIK------DN 229

Query: 182 GPCSTLFIANLGPNCTEDELKQALSVYTGFNMVKMRSRGGMPVAFADFEEIDQATKVLEE 241
            PC+TLFI NLG N  E+EL+  LS   GF  +K+  +    V F +FE+++ AT V   
Sbjct: 230 PPCNTLFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFEDVNSATNVHHN 289

Query: 242 LQGSSLPSSDRGGMHIEYARSKMRKR 267
           LQG+ +PSS   GM I+Y+++   KR
Sbjct: 290 LQGAVIPSSGSIGMRIQYSKNPYGKR 315