Miyakogusa Predicted Gene

Lj3g3v2692910.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2692910.1 Non Chatacterized Hit- tr|D7KDV4|D7KDV4_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,35.41,4e-17,seg,NULL; coiled-coil,NULL,CUFF.44390.1
         (191 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55080.1 | Symbols: MED9 | MED9; BEST Arabidopsis thaliana pr...   133   8e-32
AT1G29580.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    62   2e-10

>AT1G55080.1 | Symbols: MED9 | MED9; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT1G29580.1);
           Has 67203 Blast hits to 25757 proteins in 1293 species:
           Archae - 12; Bacteria - 4374; Metazoa - 24340; Fungi -
           7940; Plants - 5927; Viruses - 273; Other Eukaryotes -
           24337 (source: NCBI BLink). | chr1:20553121-20554174
           REVERSE LENGTH=244
          Length = 244

 Score =  133 bits (334), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 81/97 (83%)

Query: 94  HQSLASHYQLLHLVENLAEVVDHGTPDQQSEALITELTNRFEKCQQLLNSISGSISTKAM 153
           HQSLASH+ L  +VE LA+V+++GT DQ S+AL+ EL + F+KCQQLLNSISGS+ +K M
Sbjct: 147 HQSLASHFHLYPMVEKLADVIENGTRDQNSDALVNELNSHFDKCQQLLNSISGSLGSKTM 206

Query: 154 TVEGQKKKLEESEQLLNQRRDLIADYKKSVEELVRSE 190
           TV+GQK+ +EESEQLL QRRDLI +Y+KS+EE+V  E
Sbjct: 207 TVDGQKRNVEESEQLLQQRRDLIVEYRKSIEEIVTME 243


>AT1G29580.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G55080.1); Has 28 Blast hits to 28 proteins in
           10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:10338443-10339146 FORWARD
           LENGTH=89
          Length = 89

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 53/98 (54%), Gaps = 29/98 (29%)

Query: 94  HQSLASHYQLLHLVENLAEVVDHGTPDQQSEALITELTNRFEKCQQLLNSISGSISTKAM 153
           HQ+LASH  L  LVENL +V +    DQ S+AL                           
Sbjct: 21  HQTLASH--LYPLVENLKDVTESRARDQNSDALY-------------------------- 52

Query: 154 TVEGQKKKLEESEQLLNQRRDLIADYKKSVEELVRSEP 191
            V+ QK+ LEESEQLL QR +LI +YKKSVEE+V+ EP
Sbjct: 53  -VDVQKQNLEESEQLLQQRMELIEEYKKSVEEIVKKEP 89