Miyakogusa Predicted Gene

Lj3g3v2666480.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2666480.1 tr|Q9MAZ9|Q9MAZ9_SOYBN Nonclathrin coat protein
zeta1-COP OS=Glycine max GN=copz1 PE=2 SV=1,95,0,no description,NULL;
Clat_adaptor_s,AP complex, mu/sigma subunit; seg,NULL; SUBFAMILY NOT
NAMED,NULL,CUFF.44554.1
         (180 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G60970.1 | Symbols:  | SNARE-like superfamily protein | chr1:...   250   3e-67
AT4G08520.1 | Symbols:  | SNARE-like superfamily protein | chr4:...   250   4e-67
AT3G09800.1 | Symbols:  | SNARE-like superfamily protein | chr3:...   247   4e-66

>AT1G60970.1 | Symbols:  | SNARE-like superfamily protein |
           chr1:22448008-22449387 REVERSE LENGTH=177
          Length = 177

 Score =  250 bits (639), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 123/173 (71%), Positives = 143/173 (82%)

Query: 8   PSIKNILLLDSEGKRVAVKYYSDDWPTNNSKLAFEKFVFSKTLKTNARTEAEVTLLENNI 67
           P +KNILLLDSEGKRVAVKYYSDDWPTN+++ AFEK VF+KT KTNARTE EVT LENNI
Sbjct: 5   PKVKNILLLDSEGKRVAVKYYSDDWPTNSAQEAFEKSVFTKTQKTNARTEVEVTALENNI 64

Query: 68  IIYKFVQDLHFFVTGGDDENELILASVLQGFFDAVTLLLRSNVDKREAXXXXXXXXXXXX 127
           ++YKFVQDLHFFVTGG++ENELILASVL+G FDAVTLLLRSNVDKREA            
Sbjct: 65  VVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDKREALDNLDLIFLSFD 124

Query: 128 XXVDGGIILETNGPLIAEKVTSHSLDADAPLSEQTLTQAWATAREHLTRTLLK 180
             +DGGI+LET+  +IA K   +S D +APLSEQT++QA ATAREHLTR+L+K
Sbjct: 125 EIIDGGIVLETDANVIAGKAGINSTDPNAPLSEQTISQALATAREHLTRSLMK 177


>AT4G08520.1 | Symbols:  | SNARE-like superfamily protein |
           chr4:5417887-5420295 FORWARD LENGTH=181
          Length = 181

 Score =  250 bits (638), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 122/178 (68%), Positives = 141/178 (79%)

Query: 2   ASNGQCPSIKNILLLDSEGKRVAVKYYSDDWPTNNSKLAFEKFVFSKTLKTNARTEAEVT 61
            +N  CP +KNILLLDSEGKRVAVKYYSDDW TN SKLAFEK+VFSKT KTNARTEAE+T
Sbjct: 3   GTNDSCPLVKNILLLDSEGKRVAVKYYSDDWATNASKLAFEKYVFSKTSKTNARTEAEIT 62

Query: 62  LLENNIIIYKFVQDLHFFVTGGDDENELILASVLQGFFDAVTLLLRSNVDKREAXXXXXX 121
           LLE+NI++YKF QDLHFFVTGG++ENEL+L+SVLQGFFDAV LLLR+NV+K EA      
Sbjct: 63  LLESNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEKMEALENLDL 122

Query: 122 XXXXXXXXVDGGIILETNGPLIAEKVTSHSLDADAPLSEQTLTQAWATAREHLTRTLL 179
                   VD G++LET+  +IA KV   S +A   LSEQTLTQA ATAREHL R+LL
Sbjct: 123 IFLCLDEMVDQGMVLETDANVIAGKVAMQSAEASGSLSEQTLTQALATAREHLARSLL 180


>AT3G09800.1 | Symbols:  | SNARE-like superfamily protein |
           chr3:3006731-3007916 REVERSE LENGTH=179
          Length = 179

 Score =  247 bits (630), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 123/177 (69%), Positives = 140/177 (79%)

Query: 3   SNGQCPSIKNILLLDSEGKRVAVKYYSDDWPTNNSKLAFEKFVFSKTLKTNARTEAEVTL 62
           S   CP +K ILLLDSEGKRVAVKYYSDDWPTN +KL+FEK+VFSKT KTNARTEAE+TL
Sbjct: 2   SPDSCPLVKKILLLDSEGKRVAVKYYSDDWPTNAAKLSFEKYVFSKTSKTNARTEAEITL 61

Query: 63  LENNIIIYKFVQDLHFFVTGGDDENELILASVLQGFFDAVTLLLRSNVDKREAXXXXXXX 122
           L++NII+YKF QDLHFFVTGG++ENELILASVLQGFFDAV LLLRSNV+K EA       
Sbjct: 62  LDSNIIVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEKMEALENLDLI 121

Query: 123 XXXXXXXVDGGIILETNGPLIAEKVTSHSLDADAPLSEQTLTQAWATAREHLTRTLL 179
                  VD G++LET+  +IA KV   S +A   LSEQTLTQA ATAREHL R+LL
Sbjct: 122 FLCLDEMVDQGVVLETDPNVIAGKVAMQSTEASGSLSEQTLTQALATAREHLARSLL 178