Miyakogusa Predicted Gene
- Lj3g3v2665440.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2665440.1 Non Chatacterized Hit- tr|H3GGH2|H3GGH2_PHYRM
Uncharacterized protein OS=Phytophthora ramorum
GN=fge,43.09,2e-18,Ubiquitin homologues,Ubiquitin; seg,NULL;
Ubiquitin-like,NULL; no description,NULL;
UBIQUITIN_2,Ubiq,CUFF.44544.1
(459 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14640.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/sur... 326 2e-89
AT1G14650.2 | Symbols: | SWAP (Suppressor-of-White-APricot)/sur... 279 2e-75
AT1G14650.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/sur... 279 2e-75
AT5G12280.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/sur... 127 1e-29
AT5G06890.1 | Symbols: | Ubiquitin-like superfamily protein | c... 70 4e-12
>AT1G14640.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein | chr1:5023656-5025955 FORWARD
LENGTH=735
Length = 735
Score = 326 bits (835), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 204/420 (48%), Positives = 241/420 (57%), Gaps = 45/420 (10%)
Query: 11 QLVAEGMRAASLEDKDDGKKNEMRVTEDPEPPMRIVRNWKRPEDRVPAERDPTKFVVSPI 70
+LVAEGMRAA+LE+ V + E PMRIV+NWKRPEDR ERD +K V+S I
Sbjct: 353 KLVAEGMRAANLEEYVGS------VEIEEEAPMRIVKNWKRPEDRFLTERDSSKVVISRI 406
Query: 71 TGELIPISEMSEHIRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARTRPDIF 130
TGELIPI+EMSEH+RISLIDPK+KEQK+RMFAKIRETTLAQDDEI++NIVGLAR RPDIF
Sbjct: 407 TGELIPITEMSEHMRISLIDPKFKEQKDRMFAKIRETTLAQDDEIAKNIVGLARLRPDIF 466
Query: 131 GTTEEEVSNAVKAEIEKKNDEQPKQVIWDGHTGSIGRTANQAMSQSIGSEDQNDASNNEA 190
GTTEEEVSNAVKA+IEKK DEQPKQVIWDGHTGSIGRTANQA++Q+ E + +
Sbjct: 467 GTTEEEVSNAVKADIEKK-DEQPKQVIWDGHTGSIGRTANQALTQNSNGEQGDGVYGDPN 525
Query: 191 RNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPNFQYSAQHSAGLXXXXXXXXXXXX 250
PP+ QY
Sbjct: 526 SFPGPAAFPPPRPGVPTVRPLPPPQNLALNLPRPPPSVQYPG------------------ 567
Query: 251 XXXXXXAPPP---PMQMTSGQQSVMAGQQPPMAPSISMNGQP-----MHIPPPPGSQFTP 302
AP P PM QQ ++ P PS+ M+ P M +PPPPGSQF+
Sbjct: 568 ------APRPLGVPMMQPMYQQHQLSMSGPHGHPSMMMSRPPQMQPVMRVPPPPGSQFS- 620
Query: 303 VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKQKLDDSSLIPE 362
K+QKLD+S+L+PE
Sbjct: 621 -HMQVPQPYGQLPPLSMGMMQPPPMAEMPPPPPPGEAPPPLPEEPEPKRQKLDESALVPE 679
Query: 363 DQFLAQHPGPVRISISVPNVDEGNLKGQVLEITVQSLTETVASLKEKIAGEIQLPANKQK 422
DQFLAQHPGP I +S PN ++ GQV+EITVQSL+E V SLKEKIAGE+Q+PANKQK
Sbjct: 680 DQFLAQHPGPATIRVSKPNEND----GQVMEITVQSLSENVGSLKEKIAGEMQIPANKQK 735
>AT1G14650.2 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / ubiquitin family protein |
chr1:5028077-5030520 FORWARD LENGTH=785
Length = 785
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 159/290 (54%), Positives = 182/290 (62%), Gaps = 20/290 (6%)
Query: 11 QLVAEGMRAASLEDKDDGKKNEMRVTEDPEPPMRIVRNWKRPEDRVPAERDPTKFVVSPI 70
+LVAEGMRAA+LE+ ++ D E PMRIV+NWKRPEDR+P ERDPTK V+SPI
Sbjct: 362 KLVAEGMRAANLEEN-----VKIENVHDEEAPMRIVKNWKRPEDRIPTERDPTKVVISPI 416
Query: 71 TGELIPISEMSEHIRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARTRPDIF 130
TGELIPI+EMSEH+RISLIDPK+KEQK+RMFAKIRETTLAQDDEI++NIVGLAR RPDIF
Sbjct: 417 TGELIPINEMSEHMRISLIDPKFKEQKDRMFAKIRETTLAQDDEIAKNIVGLARLRPDIF 476
Query: 131 GTTEEEVSNAVKAEIEKKNDEQPKQVIWDGHTGSIGRTANQAMSQSIGSEDQNDASNNEA 190
GTTEEEVSNAVKAEIEKK DEQPKQVIWDGHTGSIGRTANQA+SQ+ E+Q D +
Sbjct: 477 GTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHTGSIGRTANQALSQNANGEEQGDGVYGDP 536
Query: 191 RNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPNFQYSAQHSAGLXXXXXXXXXXXX 250
+ PP SAQ+
Sbjct: 537 NSFPGPAALPPPRPGVPIVRPLPPPPNLALNLPRPPP---SAQYPGAPRPLGVPMMQPMH 593
Query: 251 XXXXXXAPPPPMQMTSGQQSVMAGQQPPMAPSISMNGQPMHIPPPPGSQF 300
P PP G +M + P M P MH+PPPPGSQF
Sbjct: 594 QQHQLTMPGPP-----GHPQMMMNRPPQMQPG-------MHVPPPPGSQF 631
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/110 (72%), Positives = 91/110 (82%), Gaps = 4/110 (3%)
Query: 350 KKQKLDDSSLIPEDQFLAQHPGPVRISISVPNVDEGNLKGQVLEITVQSLTETVASLKEK 409
K+QK D+S+L+PEDQFLAQHPGP I +S PN ++G Q +EITVQSL+E V SLKEK
Sbjct: 680 KRQKFDESALVPEDQFLAQHPGPATIRVSKPNENDG----QFMEITVQSLSENVGSLKEK 735
Query: 410 IAGEIQLPANKQKLSGKPGFFKDNLSLAHYNVSGGETLALSLRERGGRKR 459
IAGEIQ+PANKQKLSGK GF KDN+SLAHYNV GE L LSLRERGGRKR
Sbjct: 736 IAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERGGRKR 785
>AT1G14650.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / ubiquitin family protein |
chr1:5028077-5030520 FORWARD LENGTH=785
Length = 785
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 159/290 (54%), Positives = 182/290 (62%), Gaps = 20/290 (6%)
Query: 11 QLVAEGMRAASLEDKDDGKKNEMRVTEDPEPPMRIVRNWKRPEDRVPAERDPTKFVVSPI 70
+LVAEGMRAA+LE+ ++ D E PMRIV+NWKRPEDR+P ERDPTK V+SPI
Sbjct: 362 KLVAEGMRAANLEEN-----VKIENVHDEEAPMRIVKNWKRPEDRIPTERDPTKVVISPI 416
Query: 71 TGELIPISEMSEHIRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARTRPDIF 130
TGELIPI+EMSEH+RISLIDPK+KEQK+RMFAKIRETTLAQDDEI++NIVGLAR RPDIF
Sbjct: 417 TGELIPINEMSEHMRISLIDPKFKEQKDRMFAKIRETTLAQDDEIAKNIVGLARLRPDIF 476
Query: 131 GTTEEEVSNAVKAEIEKKNDEQPKQVIWDGHTGSIGRTANQAMSQSIGSEDQNDASNNEA 190
GTTEEEVSNAVKAEIEKK DEQPKQVIWDGHTGSIGRTANQA+SQ+ E+Q D +
Sbjct: 477 GTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHTGSIGRTANQALSQNANGEEQGDGVYGDP 536
Query: 191 RNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPNFQYSAQHSAGLXXXXXXXXXXXX 250
+ PP SAQ+
Sbjct: 537 NSFPGPAALPPPRPGVPIVRPLPPPPNLALNLPRPPP---SAQYPGAPRPLGVPMMQPMH 593
Query: 251 XXXXXXAPPPPMQMTSGQQSVMAGQQPPMAPSISMNGQPMHIPPPPGSQF 300
P PP G +M + P M P MH+PPPPGSQF
Sbjct: 594 QQHQLTMPGPP-----GHPQMMMNRPPQMQPG-------MHVPPPPGSQF 631
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/110 (72%), Positives = 91/110 (82%), Gaps = 4/110 (3%)
Query: 350 KKQKLDDSSLIPEDQFLAQHPGPVRISISVPNVDEGNLKGQVLEITVQSLTETVASLKEK 409
K+QK D+S+L+PEDQFLAQHPGP I +S PN ++G Q +EITVQSL+E V SLKEK
Sbjct: 680 KRQKFDESALVPEDQFLAQHPGPATIRVSKPNENDG----QFMEITVQSLSENVGSLKEK 735
Query: 410 IAGEIQLPANKQKLSGKPGFFKDNLSLAHYNVSGGETLALSLRERGGRKR 459
IAGEIQ+PANKQKLSGK GF KDN+SLAHYNV GE L LSLRERGGRKR
Sbjct: 736 IAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERGGRKR 785
>AT5G12280.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
RNA-binding domain-containing protein |
chr5:3972014-3973636 REVERSE LENGTH=419
Length = 419
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/98 (65%), Positives = 75/98 (76%), Gaps = 4/98 (4%)
Query: 353 KLDDSSLIPEDQFLAQHPGPVRISISVPNVDEGNLKGQVLEITVQSLTETVASLKEKIAG 412
+ D+S L+PEDQFLAQHPG I +SVP+ D+ +V++ITVQSL+E VASLKEKI+G
Sbjct: 324 EFDESVLVPEDQFLAQHPGSSTIMVSVPDPDDW----KVVKITVQSLSENVASLKEKISG 379
Query: 413 EIQLPANKQKLSGKPGFFKDNLSLAHYNVSGGETLALS 450
EIQ P NKQKL GK GF KDN SLAHYNV GE L LS
Sbjct: 380 EIQFPTNKQKLRGKAGFLKDNTSLAHYNVGAGEILTLS 417
>AT5G06890.1 | Symbols: | Ubiquitin-like superfamily protein |
chr5:2135743-2135943 FORWARD LENGTH=66
Length = 66
Score = 69.7 bits (169), Expect = 4e-12, Method: Composition-based stats.
Identities = 43/75 (57%), Positives = 52/75 (69%), Gaps = 12/75 (16%)
Query: 377 ISVPNVDEGNLKGQVLEITVQSLTETVASLKEKIAGEIQLPANKQKLSGKPGFFK-DNLS 435
+SVP+V++G QV+EITVQSL+E VASLKEK+ ANK KL GK G K D+ S
Sbjct: 2 VSVPDVNDG----QVIEITVQSLSENVASLKEKV-------ANKLKLRGKAGILKDDDKS 50
Query: 436 LAHYNVSGGETLALS 450
LAHYNV G+ L LS
Sbjct: 51 LAHYNVRAGDILTLS 65