Miyakogusa Predicted Gene
- Lj3g3v2661980.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2661980.1 Non Chatacterized Hit- tr|I1LRC5|I1LRC5_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,68.75,3e-18,PPR_2,Pentatricopeptide repeat; PPR,Pentatricopeptide
repeat; SUBFAMILY NOT NAMED,NULL; FAMILY NOT N,gene.g49371.t1.1
(92 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR) su... 69 7e-13
AT2G06000.2 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 2e-08
AT2G06000.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 2e-08
AT1G62680.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 2e-08
AT3G14580.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 2e-07
AT1G12700.1 | Symbols: | ATP binding;nucleic acid binding;helic... 50 4e-07
AT3G07290.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 5e-07
AT5G47360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 49 6e-07
AT5G64320.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 7e-07
AT5G21222.1 | Symbols: | protein kinase family protein | chr5:7... 49 8e-07
AT5G57250.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 9e-07
AT5G18475.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 48 1e-06
AT1G12775.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 48 1e-06
AT5G16640.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 48 2e-06
AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-... 48 2e-06
AT5G18950.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 47 2e-06
AT4G28010.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 47 2e-06
AT5G12100.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 47 2e-06
AT5G55840.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 47 2e-06
AT3G22470.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 47 3e-06
AT1G12620.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 47 3e-06
AT2G36240.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 47 3e-06
AT1G09900.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 46 4e-06
AT2G15630.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 46 4e-06
AT4G11690.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 46 5e-06
AT2G38420.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 46 6e-06
AT3G48810.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 45 7e-06
AT1G05670.2 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 45 8e-06
AT1G05670.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 45 8e-06
>AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:28133933-28135381 FORWARD
LENGTH=453
Length = 453
Score = 68.9 bits (167), Expect = 7e-13, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 40/64 (62%)
Query: 16 SVGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMF 75
+V + + IRGL H+G+ R M RME G P QTYN++IRY+ + E EK L +F
Sbjct: 334 NVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLF 393
Query: 76 EKMG 79
EKMG
Sbjct: 394 EKMG 397
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 16 SVGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMF 75
SV + I+ LC ++E AV+ M G P V TYNV+IR AGE +G +
Sbjct: 299 SVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELM 358
Query: 76 EKM 78
++M
Sbjct: 359 QRM 361
>AT2G06000.2 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:2328000-2329610 REVERSE
LENGTH=536
Length = 536
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 11 LRLRS--SVGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGER 68
LR +S F + IRGLC G E+A+ +G M G P + TYN +I+ FC + E
Sbjct: 198 LRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNEL 257
Query: 69 EKGLSMFE--KMGMVCA 83
K MF+ K G VC+
Sbjct: 258 NKASEMFKDVKSGSVCS 274
>AT2G06000.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:2328000-2329610 REVERSE
LENGTH=536
Length = 536
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 11 LRLRS--SVGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGER 68
LR +S F + IRGLC G E+A+ +G M G P + TYN +I+ FC + E
Sbjct: 198 LRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNEL 257
Query: 69 EKGLSMFE--KMGMVCA 83
K MF+ K G VC+
Sbjct: 258 NKASEMFKDVKSGSVCS 274
>AT1G62680.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23208247-23209893 REVERSE
LENGTH=548
Length = 548
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 13 LRSSVGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGL 72
L S+ + I+G +GD+++A F +M+ GI P + TYN+++ CD GE EK L
Sbjct: 361 LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKAL 420
Query: 73 SMFEKM 78
+FE M
Sbjct: 421 VIFEDM 426
>AT3G14580.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:4903012-4904229 FORWARD
LENGTH=405
Length = 405
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 24 IRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMFEKM 78
I+GLC SG++E A+ + + RP V T++ +IR FC+ G+ E+ + E+M
Sbjct: 209 IKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERM 263
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 14 RSSVGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLS 73
R +V F IRG C+ G E A + RME+ I P T+N++I G E+G+
Sbjct: 234 RPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKERIEPDTITFNILISGLRKKGRVEEGID 293
Query: 74 MFEKM 78
+ E+M
Sbjct: 294 LLERM 298
>AT1G12700.1 | Symbols: | ATP binding;nucleic acid
binding;helicases | chr1:4323722-4326227 REVERSE
LENGTH=735
Length = 735
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 8 ISPLRLRSSVGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGE 67
IS L ++ + + ++G C SG ++ A M HG+ P V TY +++ CD G+
Sbjct: 394 ISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGK 453
Query: 68 REKGLSMFEKM 78
EK L +FE +
Sbjct: 454 LEKALEIFEDL 464
>AT3G07290.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:2321740-2324382 REVERSE
LENGTH=880
Length = 880
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 19 NFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMFEKM 78
++ + I GLC G +E A +M E G +P +TY V+I+ CD G +K ++F++M
Sbjct: 268 SYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEM 327
>AT5G47360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:19214445-19215878 REVERSE
LENGTH=477
Length = 477
Score = 48.9 bits (115), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 24 IRGLCHSGDMERAVMFMGRMEEHG----IRPGVQTYNVVIRYFCDAGEREKGLSMFEKMG 79
+ G+C SGDMERA+ + ME+ I P TY +VI+ FC+ E+ L + ++MG
Sbjct: 242 LEGVCKSGDMERALELLAEMEKEDGGGLISPNAVTYTLVIQAFCEKRRVEEALLVLDRMG 301
>AT5G64320.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:25723247-25725439 REVERSE
LENGTH=730
Length = 730
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 31/55 (56%)
Query: 24 IRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMFEKM 78
I GLC SG +E AV F M G P + T+N +I C AG E GL+MF K+
Sbjct: 606 INGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKL 660
>AT5G21222.1 | Symbols: | protein kinase family protein |
chr5:7209422-7213700 FORWARD LENGTH=831
Length = 831
Score = 48.5 bits (114), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 20 FKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMFEKM- 78
F + +G +G+ E+A + +M + G+RP V Y +I +C AGE +K + +++KM
Sbjct: 639 FSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMC 698
Query: 79 GMVCACP 85
G+V P
Sbjct: 699 GIVGLSP 705
>AT5G57250.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:23195609-23198524 REVERSE
LENGTH=971
Length = 971
Score = 48.5 bits (114), Expect = 9e-07, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 24 IRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAG 66
I G+C G++ RA +G ME+ GI+P + TYN VI C AG
Sbjct: 354 IDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVINGLCMAG 396
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 13 LRSSVGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGL 72
+ V ++ + I GL G++E A+ +G+M + G+ P + TY +IR C G+ E+
Sbjct: 273 MNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGKLEEAF 332
Query: 73 SMFEKM 78
+F ++
Sbjct: 333 VLFNRI 338
>AT5G18475.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:6129255-6130775 REVERSE
LENGTH=506
Length = 506
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 18 GNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSM--- 74
G++++ + LC +G++E+AV F+ M E GI P T+N ++ C++G E G+ +
Sbjct: 409 GSYRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWNELVVRLCESGYTEIGVRVLIG 468
Query: 75 FEKMGMVCACPIWTCIM 91
F ++G++ W ++
Sbjct: 469 FLRIGLIPGPKSWGAVV 485
>AT1G12775.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:4353906-4355840 FORWARD
LENGTH=644
Length = 644
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 5 VSLISPLRLRSSVGN---FKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRY 61
+ L + LR + N + ++G C SG +E A M +RP + +Y +++
Sbjct: 423 LELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDG 482
Query: 62 FCDAGEREKGLSMFEKM 78
CD GE EK L +F K+
Sbjct: 483 LCDNGELEKALEIFGKI 499
>AT5G16640.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:5461031-5462545 FORWARD
LENGTH=504
Length = 504
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 16 SVGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMF 75
++ + + + GLC +G +E+A++ + M+++G+ + TYN++IR C AGE ++
Sbjct: 395 NIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIY 454
Query: 76 EKMGMVCACP-IWT 88
+ P IWT
Sbjct: 455 CSLNCQGLMPDIWT 468
>AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr5:15895729-15897972
FORWARD LENGTH=747
Length = 747
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 24 IRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMFEKMGMVCA 83
I+G C G+ +A++ M HG+ P V TY +I C AG + + ++M +
Sbjct: 317 IKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGL 376
Query: 84 CP 85
CP
Sbjct: 377 CP 378
>AT5G18950.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:6328519-6329970 REVERSE
LENGTH=483
Length = 483
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 24 IRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMFEKMGMVCA 83
I+G C G + A M E G+ P TYN +I+ FC + EKGL +++++ +
Sbjct: 395 IKGFCSHGKSDEAFEIFKNMSETGVTPNAITYNALIKGFCKENKVEKGLKLYKELKALGL 454
Query: 84 CP 85
P
Sbjct: 455 KP 456
>AT4G28010.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:13930379-13932493 FORWARD
LENGTH=704
Length = 704
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 16 SVGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMF 75
+V N + ++GLC + + +AV + M + + P V +YN VIR FC+ E EK L +
Sbjct: 141 NVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELA 200
Query: 76 EKM-GMVCACPIWTCIMF 92
+M G C+ W+ + +
Sbjct: 201 NEMKGSGCS---WSLVTW 215
>AT5G12100.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:3911388-3913838 FORWARD LENGTH=816
Length = 816
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 32/66 (48%)
Query: 20 FKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMFEKMG 79
+ I G C GD+ A M + ME+ G++P YN +IR FC+ GE E KM
Sbjct: 392 YNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMK 451
Query: 80 MVCACP 85
+ P
Sbjct: 452 LKGVSP 457
>AT5G55840.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:22598038-22601688 FORWARD
LENGTH=1136
Length = 1136
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 16 SVGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMF 75
V F + I LC G E++ M +ME+ G P + TYN V+ ++C G + + +
Sbjct: 232 DVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELL 291
Query: 76 EKM 78
+ M
Sbjct: 292 DHM 294
>AT3G22470.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:7966066-7967925 REVERSE
LENGTH=619
Length = 619
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 28/55 (50%)
Query: 24 IRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMFEKM 78
+ G C SG + A M G+ P V TY +++ CD GE K L +FEKM
Sbjct: 427 VLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKM 481
>AT1G12620.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:4294883-4296748 REVERSE
LENGTH=621
Length = 621
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 5 VSLISPLRLRSSVGN---FKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRY 61
+ L + LR V + + I+G C G +E A M +RP + +Y +++
Sbjct: 407 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDG 466
Query: 62 FCDAGEREKGLSMFEKM 78
CD GE EK L +FEK+
Sbjct: 467 LCDNGEPEKALEIFEKI 483
>AT2G36240.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:15195663-15197156 FORWARD LENGTH=497
Length = 497
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 14 RSSVGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLS 73
+ +VG + + G SGDM++A+ F RM + +P V T+N++I +C + + + L
Sbjct: 190 KPNVGVYNTVVNGYVKSGDMDKALRFYQRMGKERAKPDVCTFNILINGYCRSSKFDLALD 249
Query: 74 MFEKM 78
+F +M
Sbjct: 250 LFREM 254
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 12 RLRSSVGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKG 71
R + V F + I G C S + A+ M+E G P V ++N +IR F +G+ E+G
Sbjct: 223 RAKPDVCTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSSGKIEEG 282
Query: 72 LSM-FEKMGMVCACPIWTC 89
+ M +E + + C TC
Sbjct: 283 VKMAYEMIELGCRFSEATC 301
>AT1G09900.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:3218133-3219929 FORWARD
LENGTH=598
Length = 598
Score = 46.2 bits (108), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 24 IRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMFEKMGM 80
IRG C G +A + +E G P V TYNV+I +C AGE LS+ ++M +
Sbjct: 144 IRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSV 200
>AT2G15630.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:6814521-6816404 FORWARD
LENGTH=627
Length = 627
Score = 46.2 bits (108), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 11 LRLRSSVGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREK 70
+ ++S+V F + I LC G +++A F+G ME GI+P + TYN +++ F G E
Sbjct: 219 MEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEG 278
Query: 71 GLSMFEKM 78
+ +M
Sbjct: 279 ARLIISEM 286
>AT4G11690.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr4:7056254-7057954 FORWARD
LENGTH=566
Length = 566
Score = 45.8 bits (107), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 1 MGYWVSLISPLRLRS---SVGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNV 57
+G +SL L+ R S+ + + + G C GD A + MEE GI+P TY +
Sbjct: 354 LGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTI 413
Query: 58 VIRYFCDAGEREKGLSM---FEKMGMV 81
+I F + EK + + E++G+V
Sbjct: 414 LIDTFARSDNMEKAIQLRLSMEELGLV 440
>AT2G38420.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:16091093-16092454 FORWARD
LENGTH=453
Length = 453
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 17 VGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGLSMFE 76
V + + I GLC D+E A+ M M + G P V TYN++I+ AG+ + ++++
Sbjct: 321 VYTYNVYINGLCKQNDIEGALKMMSSMNKLGSEPNVVTYNILIKALVKAGDLSRAKTLWK 380
Query: 77 KM 78
+M
Sbjct: 381 EM 382
>AT3G48810.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:18097048-18099027 FORWARD
LENGTH=659
Length = 659
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%)
Query: 1 MGYWVSLISPLRLRSSVGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIR 60
+ W +I L+ +V + ++G C G++ +AV MEE G P ++TY +I
Sbjct: 336 LDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLIN 395
Query: 61 YFCDAGEREKGLSMFEKMGMVCACP 85
F G + + ++ KM CP
Sbjct: 396 GFAKRGSLDGAVYIWNKMLTSGCCP 420
>AT1G05670.2 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:1698574-1700799 REVERSE
LENGTH=741
Length = 741
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 36/66 (54%)
Query: 13 LRSSVGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGL 72
L+ ++ + + GLC SG++E AV +G E G+ TY ++ +C +GE +K
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 546
Query: 73 SMFEKM 78
+ ++M
Sbjct: 547 EILKEM 552
>AT1G05670.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:1698574-1700799 REVERSE
LENGTH=741
Length = 741
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 36/66 (54%)
Query: 13 LRSSVGNFKLQIRGLCHSGDMERAVMFMGRMEEHGIRPGVQTYNVVIRYFCDAGEREKGL 72
L+ ++ + + GLC SG++E AV +G E G+ TY ++ +C +GE +K
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 546
Query: 73 SMFEKM 78
+ ++M
Sbjct: 547 EILKEM 552