Miyakogusa Predicted Gene

Lj3g3v2657810.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2657810.1 Non Chatacterized Hit- tr|Q9LIV4|Q9LIV4_ORYSJ
Putative uncharacterized protein OS=Oryza sativa subsp,39.16,2e-19,
,CUFF.44334.1
         (173 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G31130.1 | Symbols:  | Protein of unknown function (DUF1218) ...   113   7e-26

>AT4G31130.1 | Symbols:  | Protein of unknown function (DUF1218) |
           chr4:15137159-15138465 REVERSE LENGTH=195
          Length = 195

 Score =  113 bits (282), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 93/156 (59%), Gaps = 5/156 (3%)

Query: 1   MAATVQQMVRSTVIVLGILAVLFGFMADNTKPVAGTPLLAGDGTRTCNFPHDPTTALRYP 60
           MA +++QM    V  LG+L+ + G +A+N KP +GTP+ +G G   C +P DPT AL Y 
Sbjct: 1   MAVSMKQM-SLVVSALGVLSFVLGVIAENKKPASGTPI-SGKGVVICKYPSDPTVALGYL 58

Query: 61  LTG-ISYCILRDWAPVY-PYKGKVVPKRAMFKNRLFTGFFSLALFITGSATTMLLWPTIP 118
               +  C +  +  ++  YKGK VP   +FK+  F+ FF++AL  +G A ++LLWPTI 
Sbjct: 59  SAAFLLACTVAGYKSLFISYKGKSVPNSVLFKSTSFSVFFNIALITSGLALSLLLWPTIT 118

Query: 119 QQVHLKNNVYHDFSHECPPVKTSDDLGVGVILIIDS 154
           +Q+HL  NV+ +    CP  KT   LG G  + +DS
Sbjct: 119 EQLHLTRNVHRNLETSCPTAKTG-LLGGGAFVSLDS 153