Miyakogusa Predicted Gene

Lj3g3v2612450.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2612450.1 Non Chatacterized Hit- tr|C5X8R2|C5X8R2_SORBI
Putative uncharacterized protein Sb02g002080
OS=Sorghu,35.14,0.00005,seg,NULL; AP2,AP2/ERF domain; AP2_ERF,AP2/ERF
domain; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NUL,CUFF.44312.1
         (264 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G72570.1 | Symbols:  | Integrase-type DNA-binding superfamily...   134   6e-32
AT4G37750.1 | Symbols: ANT, DRG, CKC, CKC1 | Integrase-type DNA-...   119   2e-27
AT3G20840.1 | Symbols: PLT1 | Integrase-type DNA-binding superfa...   105   4e-23
AT5G57390.1 | Symbols: AIL5, CHO1, EMK | AINTEGUMENTA-like 5 | c...    98   5e-21
AT5G65510.1 | Symbols: AIL7 | AINTEGUMENTA-like 7 | chr5:2618582...    98   7e-21
AT5G17430.1 | Symbols: BBM | Integrase-type DNA-binding superfam...    97   1e-20
AT1G51190.1 | Symbols: PLT2 | Integrase-type DNA-binding superfa...    94   1e-19
AT5G10510.3 | Symbols: AIL6 | AINTEGUMENTA-like 6 | chr5:3315991...    93   2e-19
AT5G10510.2 | Symbols: AIL6 | AINTEGUMENTA-like 6 | chr5:3315991...    93   2e-19
AT5G10510.1 | Symbols: AIL6, PLT3 | AINTEGUMENTA-like 6 | chr5:3...    93   2e-19
AT1G16060.1 | Symbols: ADAP | ARIA-interacting double AP2 domain...    66   3e-11
AT2G41710.1 | Symbols:  | Integrase-type DNA-binding superfamily...    65   5e-11
AT2G41710.2 | Symbols:  | Integrase-type DNA-binding superfamily...    65   5e-11
AT1G79700.1 | Symbols:  | Integrase-type DNA-binding superfamily...    63   2e-10
AT1G79700.2 | Symbols:  | Integrase-type DNA-binding superfamily...    63   2e-10
AT3G54320.1 | Symbols: WRI1, WRI, ASML1, ATWRI1 | Integrase-type...    57   2e-08
AT3G54320.3 | Symbols: WRI1, WRI, ASML1 | Integrase-type DNA-bin...    57   2e-08
AT2G41710.3 | Symbols:  | Integrase-type DNA-binding superfamily...    47   1e-05

>AT1G72570.1 | Symbols:  | Integrase-type DNA-binding superfamily
           protein | chr1:27331381-27333698 FORWARD LENGTH=415
          Length = 415

 Score =  134 bits (337), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 104/296 (35%), Positives = 142/296 (47%), Gaps = 73/296 (24%)

Query: 1   MSNWLGFSLTPHLRI---DEEFGRENQDHXXXXXXXXXHLSSMPLRSDGSLCVSAAPEEW 57
           M  WLGFSLTP LRI   +EE                       LR DGS       + W
Sbjct: 1   MKKWLGFSLTPPLRICNSEEE----------------------ELRHDGS-------DVW 31

Query: 58  RYENAITGGNSNDEGPKLEDFLGCYSNSSSLTETKVFCHDQNQNQTKINVNV------PP 111
           RY+      + +++ PK+ED L    ++S  TE  +     N NQT +N         PP
Sbjct: 32  RYDINFDHHHHDEDVPKVEDLL----SNSHQTEYPI-----NHNQTNVNCTTVVNRLNPP 82

Query: 112 GFCTNSTEIET------GENLTNPSSLYHS------FHAYNENPHGLIPSNSIYNKPWLG 159
           G+  +   + T        NL+N    +        F ++ E      P +S Y     G
Sbjct: 83  GYLLHDQTVVTPHYPNLDPNLSNDYGGFERVGSVSVFKSWLEQGTPAFPLSSHYVTEEAG 142

Query: 160 QT----QFADVKSSPGANGCNYQSLNLTMSPTVPNGVGAISTVQVN-------EDNRKRS 208
            +     F++ ++    NG     L+L +S    + +   S V          ++ RKR 
Sbjct: 143 TSNNISHFSNEETGYNTNGS---MLSLALSHGACSDLINESNVSARVEEPVKVDEKRKRL 199

Query: 209 IAKSQAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGR 264
           + K Q +E VPRKS+D++GQRTSQYRGVTRHRWTGRYEAHLWDNSC+KEGQTR+GR
Sbjct: 200 VVKPQVKESVPRKSVDSYGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRRGR 255


>AT4G37750.1 | Symbols: ANT, DRG, CKC, CKC1 | Integrase-type
           DNA-binding superfamily protein | chr4:17739782-17742189
           FORWARD LENGTH=555
          Length = 555

 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/263 (33%), Positives = 114/263 (43%), Gaps = 63/263 (23%)

Query: 36  HLSSMPLRSDGSLCVSAAPEEWRYENAITGGNSNDEGPKLEDFLGCYSNSSSLTETKVFC 95
           H+S MPLRSDGSLC+  A     + N     +  D  PK+EDF G + N++S  E     
Sbjct: 82  HMSVMPLRSDGSLCLMEALNRSSHSN-----HHQDSSPKVEDFFGTHHNNTSHKE----A 132

Query: 96  HDQNQNQTKINVNVPPGFCTNSTEIETGENLTNPSSLYHSFHAYNENPHGLIPSNSIYNK 155
            D + +    N    P   TN  E       + P +  H     N      +     +N 
Sbjct: 133 MDLSLDSLFYNTTHEPNTTTNFQEF-----FSFPQTRNHEEETRNYGNDPSLTHGGSFNV 187

Query: 156 PWLGQTQFADVKSSPGANGCNYQSLNLTMSP----------------------------- 186
              G+ Q               QSL+L+MSP                             
Sbjct: 188 GVYGEFQ---------------QSLSLSMSPGSQSSCITGSHHHQQNQNQNHQSQNHQQI 232

Query: 187 ---TVPNGVGAISTVQVNEDNRK--RSIAKSQAREPVPRKSIDTFGQRTSQYRGVTRHRW 241
               V   VG  +T       ++    +     ++ V RKSIDTFGQRTSQYRGVTRHRW
Sbjct: 233 SEALVETSVGFETTTMAAAKKKRGQEDVVVVGQKQIVHRKSIDTFGQRTSQYRGVTRHRW 292

Query: 242 TGRYEAHLWDNSCRKEGQTRKGR 264
           TGRYEAHLWDNS +KEG +RKGR
Sbjct: 293 TGRYEAHLWDNSFKKEGHSRKGR 315


>AT3G20840.1 | Symbols: PLT1 | Integrase-type DNA-binding
           superfamily protein | chr3:7300764-7303370 FORWARD
           LENGTH=574
          Length = 574

 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 60/89 (67%)

Query: 176 NYQSLNLTMSPTVPNGVGAISTVQVNEDNRKRSIAKSQAREPVPRKSIDTFGQRTSQYRG 235
           N QSL L+M  T  N V   ++      +     A +      PR+++DTFGQRTS YRG
Sbjct: 125 NLQSLTLSMGTTAGNNVVDKASPSETTGDNASGGALAVVETATPRRALDTFGQRTSIYRG 184

Query: 236 VTRHRWTGRYEAHLWDNSCRKEGQTRKGR 264
           VTRHRWTGRYEAHLWDNSCR+EGQ+RKGR
Sbjct: 185 VTRHRWTGRYEAHLWDNSCRREGQSRKGR 213


>AT5G57390.1 | Symbols: AIL5, CHO1, EMK | AINTEGUMENTA-like 5 |
           chr5:23253459-23256437 REVERSE LENGTH=558
          Length = 558

 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 45/70 (64%), Positives = 57/70 (81%), Gaps = 4/70 (5%)

Query: 195 ISTVQVNEDNRKRSIAKSQAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSC 254
           +S+V   + N    +A S+A  P P+K++++FGQRTS YRGVTRHRWTGRYEAHLWDNSC
Sbjct: 170 VSSVHKQQPN---PLAVSEA-SPTPKKNVESFGQRTSIYRGVTRHRWTGRYEAHLWDNSC 225

Query: 255 RKEGQTRKGR 264
           R+EGQ+RKGR
Sbjct: 226 RREGQSRKGR 235


>AT5G65510.1 | Symbols: AIL7 | AINTEGUMENTA-like 7 |
           chr5:26185829-26189413 FORWARD LENGTH=498
          Length = 498

 Score = 97.8 bits (242), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 51/61 (83%)

Query: 204 NRKRSIAKSQAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKG 263
           N+K++++K +  +   +K ++T GQRTS YRGVTRHRWTGRYEAHLWDNSCR+EGQ RKG
Sbjct: 203 NKKKTVSKKETSDDSKKKIVETLGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKG 262

Query: 264 R 264
           R
Sbjct: 263 R 263


>AT5G17430.1 | Symbols: BBM | Integrase-type DNA-binding superfamily
           protein | chr5:5742542-5745568 REVERSE LENGTH=584
          Length = 584

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 40/49 (81%), Positives = 46/49 (93%)

Query: 216 EPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGR 264
           E  P+K+I++FGQRTS YRGVTRHRWTGRYEAHLWDNSC++EGQTRKGR
Sbjct: 194 ETTPKKTIESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGR 242


>AT1G51190.1 | Symbols: PLT2 | Integrase-type DNA-binding
           superfamily protein | chr1:18977517-18980305 FORWARD
           LENGTH=568
          Length = 568

 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/195 (35%), Positives = 90/195 (46%), Gaps = 39/195 (20%)

Query: 73  PKLEDFLGCYSNSSSLTETKVFCHDQNQNQTKINVNVPPGFCTNS---TEIETGENLTNP 129
           PK+ DFLG   +    T+  +  ++ + +QT  +      F TNS   T +    N  N 
Sbjct: 64  PKVADFLGVSKSGDHHTDHNLVPYN-DIHQTNASDYY---FQTNSLLPTVVTCASNAPNN 119

Query: 130 SSLYHSFHAYNENPHGLIPSNSIYNKPWLGQTQFADVKSSPGANGCNYQSLNLTMSPTVP 189
             L        E+ H L               + A VK+SP     +        S T  
Sbjct: 120 YEL-------QESAHNLQSLTLSMGSTGAAAAEVATVKASPAETSAD------NSSSTTN 166

Query: 190 NGVGAISTVQVNEDNRKRSIAKSQAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHL 249
              GAI                    E  PR++++TFGQRTS YRGVTRHRWTGRYEAHL
Sbjct: 167 TSGGAIV-------------------EATPRRTLETFGQRTSIYRGVTRHRWTGRYEAHL 207

Query: 250 WDNSCRKEGQTRKGR 264
           WDNSCR+EGQ+RKGR
Sbjct: 208 WDNSCRREGQSRKGR 222


>AT5G10510.3 | Symbols: AIL6 | AINTEGUMENTA-like 6 |
           chr5:3315991-3320008 FORWARD LENGTH=604
          Length = 604

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 49/63 (77%)

Query: 202 EDNRKRSIAKSQAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTR 261
           +  +++++   +  +   +K  DTFGQRTS YRGVTRHRWTGRYEAHLWDNSCR+EGQ R
Sbjct: 238 DSEKEKAVVAVETSDCSNKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQAR 297

Query: 262 KGR 264
           KGR
Sbjct: 298 KGR 300


>AT5G10510.2 | Symbols: AIL6 | AINTEGUMENTA-like 6 |
           chr5:3315991-3320008 FORWARD LENGTH=581
          Length = 581

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 49/63 (77%)

Query: 202 EDNRKRSIAKSQAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTR 261
           +  +++++   +  +   +K  DTFGQRTS YRGVTRHRWTGRYEAHLWDNSCR+EGQ R
Sbjct: 238 DSEKEKAVVAVETSDCSNKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQAR 297

Query: 262 KGR 264
           KGR
Sbjct: 298 KGR 300


>AT5G10510.1 | Symbols: AIL6, PLT3 | AINTEGUMENTA-like 6 |
           chr5:3316036-3320008 FORWARD LENGTH=569
          Length = 569

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 49/63 (77%)

Query: 202 EDNRKRSIAKSQAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTR 261
           +  +++++   +  +   +K  DTFGQRTS YRGVTRHRWTGRYEAHLWDNSCR+EGQ R
Sbjct: 223 DSEKEKAVVAVETSDCSNKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQAR 282

Query: 262 KGR 264
           KGR
Sbjct: 283 KGR 285


>AT1G16060.1 | Symbols: ADAP | ARIA-interacting double AP2 domain
           protein | chr1:5508563-5511609 FORWARD LENGTH=345
          Length = 345

 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 54/102 (52%), Gaps = 13/102 (12%)

Query: 163 FADVKSSPGANGCNYQSLNLTMSPTVPNGVGAISTVQVNEDNRKRSIAKSQAREPVPRKS 222
           F  V+ SP       QS   ++     +   A S V   +  RKR   +SQ R+  P   
Sbjct: 2   FIAVEVSPVMEDITRQSKKTSVENETGDDQSATSVVL--KAKRKR---RSQPRDAPP--- 53

Query: 223 IDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGR 264
                QR+S +RGVTRHRWTGRYEAHLWD +   E QT+KGR
Sbjct: 54  -----QRSSVHRGVTRHRWTGRYEAHLWDKNSWNETQTKKGR 90


>AT2G41710.1 | Symbols:  | Integrase-type DNA-binding superfamily
           protein | chr2:17400274-17402903 REVERSE LENGTH=423
          Length = 423

 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 37/51 (72%)

Query: 214 AREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGR 264
           A+E + +    T G+R+S YRGVTRHRWTGRYEAHLWD S   + Q +KG+
Sbjct: 52  AKERISKMPPCTAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGK 102


>AT2G41710.2 | Symbols:  | Integrase-type DNA-binding superfamily
           protein | chr2:17400274-17402903 REVERSE LENGTH=428
          Length = 428

 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 37/51 (72%)

Query: 214 AREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGR 264
           A+E + +    T G+R+S YRGVTRHRWTGRYEAHLWD S   + Q +KG+
Sbjct: 52  AKERISKMPPCTAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGK 102


>AT1G79700.1 | Symbols:  | Integrase-type DNA-binding superfamily
           protein | chr1:29990440-29993658 REVERSE LENGTH=303
          Length = 303

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 31/37 (83%)

Query: 228 QRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGR 264
           QR+S YRGVTRHRWTGRYEAHLWD +   + QT+KGR
Sbjct: 48  QRSSPYRGVTRHRWTGRYEAHLWDKNSWNDTQTKKGR 84


>AT1G79700.2 | Symbols:  | Integrase-type DNA-binding superfamily
           protein | chr1:29990440-29993658 REVERSE LENGTH=313
          Length = 313

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 31/37 (83%)

Query: 228 QRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGR 264
           QR+S YRGVTRHRWTGRYEAHLWD +   + QT+KGR
Sbjct: 48  QRSSPYRGVTRHRWTGRYEAHLWDKNSWNDTQTKKGR 84


>AT3G54320.1 | Symbols: WRI1, WRI, ASML1, ATWRI1 | Integrase-type
           DNA-binding superfamily protein | chr3:20114809-20118599
           FORWARD LENGTH=438
          Length = 438

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 228 QRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGR 264
           +R+S YRGVTRHRWTGR+EAHLWD S     Q +KG+
Sbjct: 61  RRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGK 97


>AT3G54320.3 | Symbols: WRI1, WRI, ASML1 | Integrase-type
           DNA-binding superfamily protein | chr3:20114809-20118473
           FORWARD LENGTH=430
          Length = 430

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 228 QRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGR 264
           +R+S YRGVTRHRWTGR+EAHLWD S     Q +KG+
Sbjct: 61  RRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGK 97


>AT2G41710.3 | Symbols:  | Integrase-type DNA-binding superfamily
           protein | chr2:17400274-17402903 REVERSE LENGTH=458
          Length = 458

 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 35/86 (40%)

Query: 214 AREPVPRKSIDTFGQRTSQYRGVTR----------------------------------- 238
           A+E + +    T G+R+S YRGVTR                                   
Sbjct: 52  AKERISKMPPCTAGKRSSIYRGVTRFGCELGVVLSVLEYGMFGLVDMHFVSRLKLEEMSR 111

Query: 239 HRWTGRYEAHLWDNSCRKEGQTRKGR 264
           HRWTGRYEAHLWD S   + Q +KG+
Sbjct: 112 HRWTGRYEAHLWDKSTWNQNQNKKGK 137