Miyakogusa Predicted Gene

Lj3g3v2578300.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2578300.1 tr|A0MSK8|A0MSK8_NICBE Nodulation signaling
pathway 1-like protein OS=Nicotiana benthamiana PE=2
SV=,77.19,2e-19,GRAS,Transcription factor GRAS,CUFF.44354.1
         (57 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13840.1 | Symbols:  | GRAS family transcription factor | chr...    79   5e-16

>AT3G13840.1 | Symbols:  | GRAS family transcription factor |
           chr3:4555305-4556837 REVERSE LENGTH=510
          Length = 510

 Score = 79.3 bits (194), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 44/57 (77%)

Query: 1   MEGEAAKALTNQREMNEEKEKWCGRMKEAGFAGEVFGEDAVDGGRALLRKYDSNWEM 57
           MEGEA K L N  +MNE KEKW  RM+EAGF  E F EDAVDG ++LLRKYD+NWE+
Sbjct: 429 MEGEATKVLMNAGDMNEGKEKWYERMREAGFFVEAFEEDAVDGAKSLLRKYDNNWEI 485