Miyakogusa Predicted Gene

Lj3g3v2578270.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2578270.1 tr|Q4VYC9|Q4VYC9_MEDTR Baculoviral IAP
repeat-containing protein OS=Medicago truncatula GN=ZFP PE=4
,82.03,0,GIDE,E3 Ubiquitin ligase; seg,NULL,CUFF.44353.1
         (292 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G54150.1 | Symbols:  | E3 Ubiquitin ligase family protein | c...   253   1e-67

>AT1G54150.1 | Symbols:  | E3 Ubiquitin ligase family protein |
           chr1:20215480-20217303 FORWARD LENGTH=383
          Length = 383

 Score =  253 bits (645), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 136/286 (47%), Positives = 183/286 (63%), Gaps = 18/286 (6%)

Query: 19  FDGAVLGLAIAYAAVRTIVKFTATSAALRKINQAP------------XXXXXXXXXXXXX 66
           FDGA+LGL +A +AV + +K+ +T+AAL+KI  AP                         
Sbjct: 19  FDGAILGLTLAVSAVGSALKYASTNAALKKIKDAPEVSISDLRSLLPASEDKSETNDNRK 78

Query: 67  XXXGKIVIVRGTVDAKAAVDGSWKTFRPGVLVSRETGDRGVILQRTETCIYNEWKGLFGW 126
               +IV+VRG V  K + D  +K     VL+S ETGD+ +I+QRT+T +Y+ WK LF  
Sbjct: 79  SNDQRIVVVRGVVKPKISGDEGYKNN--NVLISPETGDKALIIQRTQTYVYSGWKRLFQS 136

Query: 127 TSDLRAIVTRSWRQQESTSLRKVPFVLIDVGRQPYPEYVVVNLDGSRHPLPLITVYHKLQ 186
           T   R ++ RS R+  +   R VPFV++   +Q    +V VN+DGSR PLPL TVY++LQ
Sbjct: 137 TGH-RFMLERSLRKHGADFTRTVPFVIVGKDQQSNSSFVAVNMDGSRQPLPLTTVYNRLQ 195

Query: 187 PISPSPYSFLQALFGHEYPVGLLDEEKILPLGKDISAVGLCNLRNGIAEIKSCKDLPYFL 246
           PI+    SFLQA    +YPVGLLD EKILP GKDI+AVG+ +  NG+ EIKSC+DLPYFL
Sbjct: 196 PIN---SSFLQAFLYPDYPVGLLDIEKILPPGKDITAVGIYSFNNGVPEIKSCQDLPYFL 252

Query: 247 SDLDKDQMIVDLSFKTKILFWSGIVLGSMSVGVLSYAVVRNWNKWK 292
           S++ KD+MI DL  +T  +F   ++LG +SVG+LSYA VR WNKWK
Sbjct: 253 SEMTKDKMIEDLMEQTNFIFLGSVILGIVSVGILSYAAVRTWNKWK 298