Miyakogusa Predicted Gene

Lj3g3v2577240.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2577240.1 Non Chatacterized Hit- tr|I1LJL3|I1LJL3_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,56.58,2e-16,PREDICTED
PROTEIN (FRAGMENT),NULL; GAG-POL-RELATED
RETROTRANSPOSON,NULL,CUFF.44302.1
         (153 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols: CRK8 | cysteine-rich RLK (RECEPTOR-like p...    57   3e-09
ATMG00810.1 | Symbols: ORF240B | DNA/RNA polymerases superfamily...    49   1e-06

>AT4G23160.1 | Symbols: CRK8 | cysteine-rich RLK (RECEPTOR-like
           protein kinase) 8 | chr4:12129485-12134086 FORWARD
           LENGTH=1262
          Length = 1262

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 1   MDSIVKLHKTSGDPLPAPTIYRTLLGRLIYL--TRPDISYAVGSLGQFLASLTTLHFQEA 58
           MD  V     SG        YR L+GRL+YL  TR DIS+AV  L QF  +    H Q  
Sbjct: 358 MDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAV 417

Query: 59  LRILRYLKESLGSGLF 74
           ++IL Y+K ++G GLF
Sbjct: 418 MKILHYIKGTVGQGLF 433


>ATMG00810.1 | Symbols: ORF240B | DNA/RNA polymerases superfamily
           protein | chrM:227709-228431 REVERSE LENGTH=240
          Length = 240

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 14/79 (17%)

Query: 16  PAPTIYRTLLGRLIYLT--RPDISYAVGSLGQFLASLTTLHFQEALRILRYLKESLGSGL 73
           P P+ +R+++G L YLT  RPDISYAV  + Q +   T   F    R+LRY+K ++  GL
Sbjct: 95  PDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGL 154

Query: 74  ------------FCDISYA 80
                       FCD  +A
Sbjct: 155 YIHKNSKLNVQAFCDSDWA 173