Miyakogusa Predicted Gene
- Lj3g3v2576600.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2576600.1 Non Chatacterized Hit- tr|J3LPM8|J3LPM8_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB03G3,39.39,1e-16,seg,NULL; coiled-coil,NULL,CUFF.44261.1
(263 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G72490.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 241 4e-64
AT1G17400.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 206 1e-53
AT1G19115.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 58 8e-09
AT1G19115.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 57 9e-09
AT1G19115.3 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 57 9e-09
>AT1G72490.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G17400.1); Has 75 Blast hits to 75 proteins in
21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi
- 4; Plants - 58; Viruses - 0; Other Eukaryotes - 10
(source: NCBI BLink). | chr1:27289435-27290732 REVERSE
LENGTH=287
Length = 287
Score = 241 bits (615), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 138/294 (46%), Positives = 172/294 (58%), Gaps = 38/294 (12%)
Query: 1 MKFLSWMQNKLGGKQENRKSNTNAAPPACQAKQEPREEFSDWPHGFLSIGTFGKKDE--- 57
MKF WMQNKL GKQE T+ + + PREEF+DWPHG L+IGTFG K +
Sbjct: 1 MKFFGWMQNKLHGKQEI----THRPSISSASSHHPREEFNDWPHGLLAIGTFGNKKQTPQ 56
Query: 58 --------------IKXXXXXXXXXXXXPSSSEEIA-DFTPEEIGKLQKELTRLL----- 97
+ SSS+++ DFTPEE+GKLQKELT+LL
Sbjct: 57 TLDQEVIQEETVSNLHVEGRQAQDTDQELSSSDDLEEDFTPEEVGKLQKELTKLLTRRSK 116
Query: 98 RRKPNVEKEISELPLDRFLNCPSSLEVDRRISNALCXXXXXXXXXXXXTLSVILDRCKDV 157
+RK +V +E++ LPLDRFLNCPSSLEVDRRISNALC T+SVIL RCK +
Sbjct: 117 KRKSDVNRELANLPLDRFLNCPSSLEVDRRISNALCDEKEEDIER---TISVILGRCKAI 173
Query: 158 CAEXXXXXX------XXXXXXXXXXXMFVCRSGFAPTPS--LRDTLQESRMEKLLRTMLH 209
E MFVC GF+P P LRDT QE+RMEKLLR MLH
Sbjct: 174 STESKNKTKKNKRDLSKTSVSHLLKKMFVCTEGFSPVPRPILRDTFQETRMEKLLRMMLH 233
Query: 210 KRIYTQNSSRASSMKKCLEDKKLIRNRNEDEPEERKDEGCKWVKTDSEYIVLEI 263
K++ TQ SS+ +S KK L+DK+ + +NE+E ++G KWVKTDS++IVLEI
Sbjct: 234 KKVNTQASSKQTSTKKYLQDKQQLSLKNEEEEGRSSNDGGKWVKTDSDFIVLEI 287
>AT1G17400.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G72490.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr1:5960920-5962245 REVERSE LENGTH=295
Length = 295
Score = 206 bits (524), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 137/298 (45%), Positives = 167/298 (56%), Gaps = 38/298 (12%)
Query: 1 MKFLSWMQNKLGGKQENRKSNTNAAPPACQAKQEPREEFSDWPHGFLSIGTFGK------ 54
MKF WMQNKL G NR S ++A+ + KQEPREEFSDWPH L+IGTFG
Sbjct: 1 MKFFGWMQNKLNGDH-NRTSTSSAS--SHHVKQEPREEFSDWPHALLAIGTFGTTSNSVS 57
Query: 55 -------KDEIKXXXXXXXXXXXXPSSSEEI--ADFTPEEIGKLQKELTRLL----RRKP 101
+EI+ S + DFTPEE+GKLQKEL +LL +RK
Sbjct: 58 ENESKNVHEEIEAEKKCTAQSEQEEEPSSSVNLEDFTPEEVGKLQKELMKLLSRTKKRKS 117
Query: 102 NVEKEI-SELPLDRFLNCPSSLEVDRRISNALCXXXXXXXXXXXX----TLSVILDRCKD 156
+V +E+ LPLDRFLNCPSSLEVDRRISNAL T++VIL RCK+
Sbjct: 118 DVNRELMKNLPLDRFLNCPSSLEVDRRISNALSAVVDSSEENKEEDMERTINVILGRCKE 177
Query: 157 VCAEXXXXXXXXXXXXXXXXXMF----VCRSGF--APTPSLRDTLQESRMEKLLRTMLHK 210
+ E +F VC G AP+PSLRDTLQESRMEKLL+ MLHK
Sbjct: 178 ISIESKNNKKKRDISKNSVSYLFKKIFVCADGISTAPSPSLRDTLQESRMEKLLKMMLHK 237
Query: 211 RIYTQNSSRASSM--KKCLEDKK---LIRNRNEDEPEERKDEGCKWVKTDSEYIVLEI 263
+I Q SS+ +S+ K+ L+DKK L E +G KWVKTDS++IVLEI
Sbjct: 238 KINAQASSKPTSLTTKRYLQDKKQLSLKSEEEETSERRSSSDGYKWVKTDSDFIVLEI 295
>AT1G19115.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G72490.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
2996 (source: NCBI BLink). | chr1:6606351-6607313
FORWARD LENGTH=174
Length = 174
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 48/87 (55%), Gaps = 12/87 (13%)
Query: 178 MFVCRSGFAPTPSL-----RDTLQESRMEKLLRTMLHKRIYTQNSSRASSMKKCLEDKKL 232
MFVC SGF P L D+L +RMEK+LRT+L+K+I+ Q S+ S KK LE
Sbjct: 94 MFVCTSGFKTPPPLLDLSRGDSLHNTRMEKMLRTILNKKIHPQRSN--SIAKKYLESNHK 151
Query: 233 IRNRNEDEPEERKDEGCKWVKTDSEYI 259
I DE D KWVKTDSE
Sbjct: 152 IM----DEARSSVD-ANKWVKTDSELF 173
>AT1G19115.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G72490.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
2996 (source: NCBI BLink). | chr1:6606351-6607667
FORWARD LENGTH=174
Length = 174
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 178 MFVCRSGFAPTPSL-----RDTLQESRMEKLLRTMLHKRIYTQNSSRASSMKKCLEDKKL 232
MFVC SGF P L D+L +RMEK+LRT+L+K+I+ Q S+ S KK LE
Sbjct: 94 MFVCTSGFKTPPPLLDLSRGDSLHNTRMEKMLRTILNKKIHPQRSN--SIAKKYLESNHK 151
Query: 233 IRNRNEDEPEERKDEGCKWVKTDSE 257
I DE D KWVKTDSE
Sbjct: 152 IM----DEARSSVDAN-KWVKTDSE 171
>AT1G19115.3 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G72490.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
2996 (source: NCBI BLink). | chr1:6606351-6607197
FORWARD LENGTH=175
Length = 175
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 178 MFVCRSGFAPTPSL-----RDTLQESRMEKLLRTMLHKRIYTQNSSRASSMKKCLEDKKL 232
MFVC SGF P L D+L +RMEK+LRT+L+K+I+ Q S+ S KK LE
Sbjct: 94 MFVCTSGFKTPPPLLDLSRGDSLHNTRMEKMLRTILNKKIHPQRSN--SIAKKYLESNHK 151
Query: 233 IRNRNEDEPEERKDEGCKWVKTDSE 257
I DE D KWVKTDSE
Sbjct: 152 IM----DEARSSVDAN-KWVKTDSE 171