Miyakogusa Predicted Gene

Lj3g3v2576580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2576580.1 Non Chatacterized Hit- tr|C6SZ12|C6SZ12_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.56808 PE,95.31,0,snRNP
Sm proteins,Ribonucleoprotein LSM domain, eukaryotic/archaea-type;
LSM,Ribonucleoprotein LSM d,CUFF.44265.1
         (128 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14080.2 | Symbols:  | Small nuclear ribonucleoprotein family...   241   1e-64
AT3G14080.1 | Symbols:  | Small nuclear ribonucleoprotein family...   241   1e-64
AT1G19120.1 | Symbols:  | Small nuclear ribonucleoprotein family...   220   2e-58
AT1G65700.2 | Symbols:  | Small nuclear ribonucleoprotein family...    60   5e-10
AT1G65700.1 | Symbols:  | Small nuclear ribonucleoprotein family...    60   5e-10
AT3G11500.1 | Symbols:  | Small nuclear ribonucleoprotein family...    54   4e-08
AT2G23930.1 | Symbols: SNRNP-G | probable small nuclear ribonucl...    52   1e-07
AT2G23930.2 | Symbols: SNRNP-G | probable small nuclear ribonucl...    47   4e-06

>AT3G14080.2 | Symbols:  | Small nuclear ribonucleoprotein family
           protein | chr3:4667717-4668989 FORWARD LENGTH=128
          Length = 128

 Score =  241 bits (614), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 116/128 (90%), Positives = 123/128 (96%)

Query: 1   MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDL 60
           MSWAGPE+IYLSTSLASYLD+KLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVG+ 
Sbjct: 1   MSWAGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQ 60

Query: 61  YCDIPLGLYVIRGENVVLIGELDLEREELPPHMVRVSTAEIKRAQKAERDASDLKGTMRK 120
           YCDIPLGLYVIRGENVVLIGELD EREELPPHM+RVS AEIKRAQK ER+AS+L+GTMRK
Sbjct: 61  YCDIPLGLYVIRGENVVLIGELDTEREELPPHMIRVSEAEIKRAQKVEREASELRGTMRK 120

Query: 121 RMEFLDLD 128
           RMEFLD D
Sbjct: 121 RMEFLDFD 128


>AT3G14080.1 | Symbols:  | Small nuclear ribonucleoprotein family
           protein | chr3:4667717-4668989 FORWARD LENGTH=128
          Length = 128

 Score =  241 bits (614), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 116/128 (90%), Positives = 123/128 (96%)

Query: 1   MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDL 60
           MSWAGPE+IYLSTSLASYLD+KLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVG+ 
Sbjct: 1   MSWAGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQ 60

Query: 61  YCDIPLGLYVIRGENVVLIGELDLEREELPPHMVRVSTAEIKRAQKAERDASDLKGTMRK 120
           YCDIPLGLYVIRGENVVLIGELD EREELPPHM+RVS AEIKRAQK ER+AS+L+GTMRK
Sbjct: 61  YCDIPLGLYVIRGENVVLIGELDTEREELPPHMIRVSEAEIKRAQKVEREASELRGTMRK 120

Query: 121 RMEFLDLD 128
           RMEFLD D
Sbjct: 121 RMEFLDFD 128


>AT1G19120.1 | Symbols:  | Small nuclear ribonucleoprotein family
           protein | chr1:6608288-6609162 FORWARD LENGTH=128
          Length = 128

 Score =  220 bits (560), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 108/128 (84%), Positives = 117/128 (91%)

Query: 1   MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDL 60
           MSWA P+DI+ STSLA+YLDKKLLVLLRDGRKLMG LRSFDQFANAVLE A ERVIVGDL
Sbjct: 1   MSWAAPDDIFFSTSLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDL 60

Query: 61  YCDIPLGLYVIRGENVVLIGELDLEREELPPHMVRVSTAEIKRAQKAERDASDLKGTMRK 120
           YCDIPLGLY+IRGENVVLIGELD+E+EELP HMV+V  AEIKRAQKAE++   LKGTMRK
Sbjct: 61  YCDIPLGLYIIRGENVVLIGELDVEKEELPAHMVQVPEAEIKRAQKAEKEEMLLKGTMRK 120

Query: 121 RMEFLDLD 128
           RMEFLDLD
Sbjct: 121 RMEFLDLD 128


>AT1G65700.2 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr1:24434463-24435870 REVERSE LENGTH=98
          Length = 98

 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 12 STSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGDLYCDIPLGLYV 70
          +T L + +D+ + V+  DGR ++G L+ FDQ  N +L+ + ERV    +      LGLY+
Sbjct: 4  TTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYI 63

Query: 71 IRGENVVLIGELDLE 85
          IRG+N+ +IGELD E
Sbjct: 64 IRGDNIGVIGELDEE 78


>AT1G65700.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr1:24434463-24435870 REVERSE LENGTH=98
          Length = 98

 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 12 STSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGDLYCDIPLGLYV 70
          +T L + +D+ + V+  DGR ++G L+ FDQ  N +L+ + ERV    +      LGLY+
Sbjct: 4  TTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYI 63

Query: 71 IRGENVVLIGELDLE 85
          IRG+N+ +IGELD E
Sbjct: 64 IRGDNIGVIGELDEE 78


>AT3G11500.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr3:3621626-3622474 REVERSE LENGTH=79
          Length = 79

 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 15 LASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGE 74
          L  Y+DKKL + L   R ++GTLR FDQF N V++   E  + GD   DI  G+ VIRG 
Sbjct: 10 LKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVE--VNGDDKTDI--GMVVIRGN 65

Query: 75 NVVLIGELD 83
          ++V +  L+
Sbjct: 66 SIVTVEALE 74


>AT2G23930.1 | Symbols: SNRNP-G | probable small nuclear
          ribonucleoprotein G | chr2:10182353-10183026 FORWARD
          LENGTH=80
          Length = 80

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 15 LASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGE 74
          L  Y+DKKL + L   R + GTLR FDQF N V++   E  + G+   DI  G+ VIRG 
Sbjct: 10 LKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGN 65

Query: 75 NVVLIGELD 83
          ++V +  L+
Sbjct: 66 SIVTVEALE 74


>AT2G23930.2 | Symbols: SNRNP-G | probable small nuclear
          ribonucleoprotein G | chr2:10182496-10183026 FORWARD
          LENGTH=67
          Length = 67

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 19 LDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVL 78
          +DKKL + L   R + GTLR FDQF N V++   E  + G+   DI  G+ VIRG ++V 
Sbjct: 1  MDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGNSIVT 56

Query: 79 IGELD 83
          +  L+
Sbjct: 57 VEALE 61