Miyakogusa Predicted Gene
- Lj3g3v2576340.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2576340.1 Non Chatacterized Hit- tr|F8NG06|F8NG06_SERL9
Putative uncharacterized protein OS=Serpula lacrymans
,27.45,0.0000000001,no description,Nucleotide-binding, alpha-beta
plait; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL,CUFF.44247.1
(333 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 578 e-165
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 568 e-162
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 552 e-157
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 548 e-156
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 542 e-154
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 138 6e-33
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 136 2e-32
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 134 9e-32
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 132 5e-31
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 129 2e-30
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 125 4e-29
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 125 6e-29
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 123 1e-28
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 119 2e-27
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 113 2e-25
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 113 2e-25
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 99 5e-21
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 99 5e-21
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 98 8e-21
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 97 1e-20
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 97 1e-20
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 96 4e-20
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 95 6e-20
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 95 6e-20
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 94 1e-19
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 86 2e-17
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 83 3e-16
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 82 3e-16
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 81 9e-16
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 2e-15
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 2e-15
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 76 3e-14
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 75 8e-14
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 5e-13
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 72 7e-13
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 72 7e-13
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 2e-12
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 1e-11
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 67 1e-11
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 67 1e-11
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 67 1e-11
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 67 1e-11
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 67 2e-11
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 2e-11
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 4e-11
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 65 5e-11
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 65 5e-11
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 65 5e-11
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 65 5e-11
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 65 7e-11
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 1e-10
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 62 4e-10
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 4e-10
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 4e-10
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 1e-09
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 61 1e-09
AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 60 1e-09
AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 60 2e-09
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 60 2e-09
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 60 2e-09
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 60 3e-09
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 60 3e-09
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 59 3e-09
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 59 4e-09
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 5e-09
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 7e-09
AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 58 1e-08
AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 58 1e-08
AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 58 1e-08
AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 58 1e-08
AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 1e-08
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translation... 57 1e-08
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 57 1e-08
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 57 1e-08
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 57 1e-08
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 57 1e-08
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 57 1e-08
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 56 3e-08
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 56 4e-08
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 56 4e-08
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 56 4e-08
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 4e-08
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 55 5e-08
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 6e-08
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 6e-08
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 6e-08
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 6e-08
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 7e-08
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 7e-08
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 8e-08
AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179 F... 55 8e-08
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-07
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-07
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 54 1e-07
AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 54 2e-07
AT5G25060.1 | Symbols: | RNA recognition motif (RRM)-containing... 54 2e-07
AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 53 3e-07
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 53 3e-07
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 53 3e-07
AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 53 3e-07
AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 53 3e-07
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 5e-07
AT5G59860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 6e-07
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 8e-07
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 51 9e-07
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 50 3e-06
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 50 3e-06
AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-06
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 50 3e-06
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 3e-06
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 3e-06
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 3e-06
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 3e-06
AT1G07360.1 | Symbols: | CCCH-type zinc fingerfamily protein wi... 49 4e-06
AT2G29580.1 | Symbols: | CCCH-type zinc fingerfamily protein wi... 49 6e-06
AT5G07290.1 | Symbols: AML4, ML4 | MEI2-like 4 | chr5:2294248-22... 49 6e-06
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 7e-06
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 48 1e-05
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 578 bits (1489), Expect = e-165, Method: Compositional matrix adjust.
Identities = 267/310 (86%), Positives = 288/310 (92%)
Query: 24 SLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGC 83
SLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIH QVTE LLQEVFAGTGPVE C
Sbjct: 24 SLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESC 83
Query: 84 KLFRKEKSSYGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFV 143
KL RKEKSSYGF+HYFDRRSA LAIL+LNGRHLFGQPIKVNWAYASGQREDTS H+NIFV
Sbjct: 84 KLIRKEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWAYASGQREDTSSHFNIFV 143
Query: 144 GDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGK 203
GDLSPEVTDA LF CFSVYP+CSDARVMWDQKTGRSRGFGFVSFR+QQDAQ+AI+++TGK
Sbjct: 144 GDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGK 203
Query: 204 WLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYTTVY 263
WLGSRQIRCNWATKGA E+KQ+SD+KSVVELT+G SEDGK+ +N +APENN QYTTVY
Sbjct: 204 WLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYTTVY 263
Query: 264 VGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSIL 323
VGNL E +Q+DLHRHFH+LGAGVIEEVRVQRDKGFGFVRYSTH EAALAIQMGNT S L
Sbjct: 264 VGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHSYL 323
Query: 324 CGKQIKCSWG 333
G+Q+KCSWG
Sbjct: 324 SGRQMKCSWG 333
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 568 bits (1464), Expect = e-162, Method: Compositional matrix adjust.
Identities = 265/310 (85%), Positives = 286/310 (92%), Gaps = 3/310 (0%)
Query: 24 SLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGC 83
SLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIH QVTE LLQEVFAGTGPVE C
Sbjct: 24 SLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESC 83
Query: 84 KLFRKEKSSYGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFV 143
KL RKEKSSYGF+HYFDRRSA LAIL+LNGRHLFGQPIKVNWAYASGQREDTS H+NIFV
Sbjct: 84 KLIRKEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWAYASGQREDTSSHFNIFV 143
Query: 144 GDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGK 203
GDLSPEVTDA LF CFSVYP+CSDARVMWDQKTGRSRGFGFVSFR+QQDAQ+AI+++TGK
Sbjct: 144 GDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGK 203
Query: 204 WLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYTTVY 263
WLGSRQIRCNWATKGA E+KQ+SD+KSVVELT+G DGK+ +N +APENN QYTTVY
Sbjct: 204 WLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSG---DGKDTTNGEAPENNAQYTTVY 260
Query: 264 VGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSIL 323
VGNL E +Q+DLHRHFH+LGAGVIEEVRVQRDKGFGFVRYSTH EAALAIQMGNT S L
Sbjct: 261 VGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHSYL 320
Query: 324 CGKQIKCSWG 333
G+Q+KCSWG
Sbjct: 321 SGRQMKCSWG 330
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 94/203 (46%), Gaps = 38/203 (18%)
Query: 49 DPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSA 104
D S+ +++VG++ +VT+ +L F+ ++ +K+ +GF+ + +++ A
Sbjct: 134 DTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDA 193
Query: 105 ALAILTLNGRHLFGQPIKVNWA--------------------YASGQREDTSG------- 137
AI + G+ L + I+ NWA SG +DT+
Sbjct: 194 QTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGDGKDTTNGEAPENN 253
Query: 138 --HYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQS 195
+ ++VG+L+PEV+ L F A V+ + + R +GFGFV + + +A
Sbjct: 254 AQYTTVYVGNLAPEVSQVDLHRHFHSL----GAGVIEEVRVQRDKGFGFVRYSTHVEAAL 309
Query: 196 AIN-DLTGKWLGSRQIRCNWATK 217
AI T +L RQ++C+W +K
Sbjct: 310 AIQMGNTHSYLSGRQMKCSWGSK 332
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 552 bits (1422), Expect = e-157, Method: Compositional matrix adjust.
Identities = 256/310 (82%), Positives = 279/310 (90%)
Query: 24 SLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGC 83
SLYHPG+LAPPQ+EP+PSGNLPPGFDPSTCRSVYVGNIHTQVTE LLQE+F TGPVE
Sbjct: 29 SLYHPGVLAPPQLEPVPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESS 88
Query: 84 KLFRKEKSSYGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFV 143
KL RK+KSSYGF+HYFDRRSAALAIL+LNGRHLFGQPIKVNWAYA+GQREDTS H+NIFV
Sbjct: 89 KLIRKDKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFV 148
Query: 144 GDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGK 203
GDLSPEVTDATL+ FSV+ SCSDARVMWDQKTGRSRGFGFVSFR+QQDAQ+AIN++ GK
Sbjct: 149 GDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGK 208
Query: 204 WLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYTTVY 263
WL SRQIRCNWATKGA ++K +SD KSVVELT GSSEDGKE N + PENN Q+TTVY
Sbjct: 209 WLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFTTVY 268
Query: 264 VGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSIL 323
VGNL E TQLDLHR+FHALGAGVIEEVRVQRDKGFGFVRY+TH EAALAIQMGNTQ L
Sbjct: 269 VGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNTQPYL 328
Query: 324 CGKQIKCSWG 333
+QIKCSWG
Sbjct: 329 FNRQIKCSWG 338
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 41/206 (19%)
Query: 49 DPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSA 104
D S+ +++VG++ +VT+ L + F+ ++ +K+ +GF+ + +++ A
Sbjct: 139 DTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 198
Query: 105 ALAILTLNGRHLFGQPIKVNWA--------------------YASGQREDTSGHYN---- 140
AI +NG+ L + I+ NWA +G ED N
Sbjct: 199 QTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETP 258
Query: 141 --------IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQD 192
++VG+L+PEVT L F A V+ + + R +GFGFV + + +
Sbjct: 259 ENNSQFTTVYVGNLAPEVTQLDLHRYFHAL----GAGVIEEVRVQRDKGFGFVRYNTHPE 314
Query: 193 AQSAIN-DLTGKWLGSRQIRCNWATK 217
A AI T +L +RQI+C+W K
Sbjct: 315 AALAIQMGNTQPYLFNRQIKCSWGNK 340
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 548 bits (1412), Expect = e-156, Method: Compositional matrix adjust.
Identities = 248/310 (80%), Positives = 280/310 (90%)
Query: 24 SLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGC 83
SLYHPG++APPQ+EP+PSGNLPPGFDP+TCRSVY GNIHTQVTE+LLQE+FA TGP+E C
Sbjct: 33 SLYHPGVMAPPQMEPLPSGNLPPGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESC 92
Query: 84 KLFRKEKSSYGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFV 143
KL RK+KSSYGF+HYFDRR A++AI+TLNGRH+FGQP+KVNWAYA+GQREDTS H+NIFV
Sbjct: 93 KLIRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFV 152
Query: 144 GDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGK 203
GDLSPEVTDA LF FS + SCSDARVMWDQKTGRSRGFGFVSFR+QQDAQ+AIN++ GK
Sbjct: 153 GDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGK 212
Query: 204 WLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYTTVY 263
W+ SRQIRCNWATKGA E+K +SD KSVVELTNGSSEDG+E+SN DAPENNPQ+TTVY
Sbjct: 213 WVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVY 272
Query: 264 VGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSIL 323
VGNL E TQLDLHR F+ LGAGVIEEVRVQRDKGFGFVRY+TH EAALAIQMGN Q L
Sbjct: 273 VGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQPFL 332
Query: 324 CGKQIKCSWG 333
+QI+CSWG
Sbjct: 333 FSRQIRCSWG 342
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 41/206 (19%)
Query: 49 DPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSA 104
D S+ +++VG++ +VT+ L + F+ ++ +K+ +GF+ + +++ A
Sbjct: 143 DTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 202
Query: 105 ALAILTLNGRHLFGQPIKVNWA--------------------YASGQREDTSGHYN---- 140
AI +NG+ + + I+ NWA +G ED N
Sbjct: 203 QTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAP 262
Query: 141 --------IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQD 192
++VG+LSPEVT L F A V+ + + R +GFGFV + + +
Sbjct: 263 ENNPQFTTVYVGNLSPEVTQLDLHRLFYTL----GAGVIEEVRVQRDKGFGFVRYNTHDE 318
Query: 193 AQSAINDLTGK-WLGSRQIRCNWATK 217
A AI + +L SRQIRC+W K
Sbjct: 319 AALAIQMGNAQPFLFSRQIRCSWGNK 344
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 542 bits (1397), Expect = e-154, Method: Compositional matrix adjust.
Identities = 248/314 (78%), Positives = 280/314 (89%), Gaps = 4/314 (1%)
Query: 24 SLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGC 83
SLYHPG++APPQ+EP+PSGNLPPGFDP+TCRSVY GNIHTQVTE+LLQE+FA TGP+E C
Sbjct: 33 SLYHPGVMAPPQMEPLPSGNLPPGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESC 92
Query: 84 KLFRKEKSSYGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFV 143
KL RK+KSSYGF+HYFDRR A++AI+TLNGRH+FGQP+KVNWAYA+GQREDTS H+NIFV
Sbjct: 93 KLIRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFV 152
Query: 144 GDLSPEVTDATLFACFSVYPSCS----DARVMWDQKTGRSRGFGFVSFRSQQDAQSAIND 199
GDLSPEVTDA LF FS + SCS DARVMWDQKTGRSRGFGFVSFR+QQDAQ+AIN+
Sbjct: 153 GDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 212
Query: 200 LTGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQY 259
+ GKW+ SRQIRCNWATKGA E+K +SD KSVVELTNGSSEDG+E+SN DAPENNPQ+
Sbjct: 213 MNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQF 272
Query: 260 TTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNT 319
TTVYVGNL E TQLDLHR F+ LGAGVIEEVRVQRDKGFGFVRY+TH EAALAIQMGN
Sbjct: 273 TTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNA 332
Query: 320 QSILCGKQIKCSWG 333
Q L +QI+CSWG
Sbjct: 333 QPFLFSRQIRCSWG 346
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 45/210 (21%)
Query: 49 DPSTCRSVYVGNIHTQVTELLLQEVFAG----TGPVEGCKLFRKEKSS----YGFIHYFD 100
D S+ +++VG++ +VT+ L + F+ + ++ +K+ +GF+ + +
Sbjct: 143 DTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRN 202
Query: 101 RRSAALAILTLNGRHLFGQPIKVNWA--------------------YASGQREDTSGHYN 140
++ A AI +NG+ + + I+ NWA +G ED N
Sbjct: 203 QQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSN 262
Query: 141 ------------IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 188
++VG+LSPEVT L F A V+ + + R +GFGFV +
Sbjct: 263 EDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTL----GAGVIEEVRVQRDKGFGFVRYN 318
Query: 189 SQQDAQSAINDLTGK-WLGSRQIRCNWATK 217
+ +A AI + +L SRQIRC+W K
Sbjct: 319 THDEAALAIQMGNAQPFLFSRQIRCSWGNK 348
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 138 bits (347), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 161/313 (51%), Gaps = 17/313 (5%)
Query: 29 GLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRK 88
++ PPQ P S + P + R++++G++ V E L F+ TG + K+ R
Sbjct: 2 AMMHPPQ-PPQGSYHHPQTLE--EVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRN 58
Query: 89 ----EKSSYGFIHYFDRRSAALAILTLNGRHLFGQPI--KVNWA-YASGQREDTSGHYNI 141
+ YGFI + +A + T NG + G + ++NWA + SGQ+ D ++I
Sbjct: 59 KITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSI 118
Query: 142 FVGDLSPEVTDATLFACFSV-YPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
FVGDL+P+VTD L F V Y S A+V+ D TGRS+G+GFV F + + A+ ++
Sbjct: 119 FVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEM 178
Query: 201 TGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYT 260
G + +R +R + AT ++Q TK+V +T S+ + PE++ T
Sbjct: 179 NGLYCSTRPMRISAATPKKNVGVQQQYV-TKAVYPVTVPSAVAAPVQAYVAPPESDVTCT 237
Query: 261 TVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQ 320
T+ V NL T+ +L + F LG + V++ KG+G+V++ T A A+Q Q
Sbjct: 238 TISVANLDQNVTEEELKKAFSQLGEVIY--VKIPATKGYGYVQFKTRPSAEEAVQ--RMQ 293
Query: 321 SILCGKQ-IKCSW 332
+ G+Q ++ SW
Sbjct: 294 GQVIGQQAVRISW 306
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 154/292 (52%), Gaps = 23/292 (7%)
Query: 53 CRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKS----SYGFIHYFDRRSAALAI 108
++++VG++ + E L F+ T V K+ R +++ YGF+ + R +A A+
Sbjct: 118 VKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEAL 177
Query: 109 LTLNGRHLFG--QPIKVNWA-YASGQRE--DTSGHYNIFVGDLSPEVTDATLFACFS-VY 162
+ +G + QP ++NWA +++G++ + +IFVGDL+P+V+DA L F+ Y
Sbjct: 178 QSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRY 237
Query: 163 PSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGN 222
PS A+V+ D TGRS+G+GFV F + + A+ ++ G + SRQ+R AT
Sbjct: 238 PSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAA 297
Query: 223 EEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQLDLHRHFHA 282
+QN + L G +G S SD NN +T++VG L ++ T+ DL + F
Sbjct: 298 YGQQNG--SQALTLAGGHGGNG---SMSDGESNN---STIFVGGLDADVTEEDLMQPFSD 349
Query: 283 LGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILCGKQ-IKCSWG 333
G + V++ KG GFV+++ A AI GN + GK ++ SWG
Sbjct: 350 FGE--VVSVKIPVGKGCGFVQFANRQSAEEAI--GNLNGTVIGKNTVRLSWG 397
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 134 bits (337), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 159/313 (50%), Gaps = 21/313 (6%)
Query: 29 GLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRK 88
++ PPQ P S + P + R++++G++ V E L F+ TG + K+ R
Sbjct: 2 AMMHPPQ-PPQGSYHHPQTLE--EVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRN 58
Query: 89 ----EKSSYGFIHYFDRRSAALAILTLNGRHLFGQPI--KVNWA-YASGQREDTSGHYNI 141
+ YGFI + +A + T NG + G + ++NWA + SGQ+ D ++I
Sbjct: 59 KITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSI 118
Query: 142 FVGDLSPEVTDATLFACFSV-YPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
FVGDL+P+VTD L F V Y S A+V+ D TGRS+G+GFV F + + A+ ++
Sbjct: 119 FVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEM 178
Query: 201 TGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYT 260
G + +R +R + AT ++Q V ++T S+ + PE++ T
Sbjct: 179 NGLYCSTRPMRISAATPKKNVGVQQQ-----YVTKVTVPSAVAAPVQAYVAPPESDVTCT 233
Query: 261 TVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQ 320
T+ V NL T+ +L + F LG + V++ KG+G+V++ T A A+Q Q
Sbjct: 234 TISVANLDQNVTEEELKKAFSQLGEVIY--VKIPATKGYGYVQFKTRPSAEEAVQ--RMQ 289
Query: 321 SILCGKQ-IKCSW 332
+ G+Q ++ SW
Sbjct: 290 GQVIGQQAVRISW 302
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 150/291 (51%), Gaps = 16/291 (5%)
Query: 53 CRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAI 108
++++VG++ + E L F+ TG V K+ R + +S YGF+ + R +A +
Sbjct: 107 VKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVL 166
Query: 109 LTLNGRHL--FGQPIKVNWA-YASGQRE--DTSGHYNIFVGDLSPEVTDATLFACFS-VY 162
+G + QP ++NWA +++G++ + ++FVGDLSP+VTD L FS Y
Sbjct: 167 QNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRY 226
Query: 163 PSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGN 222
PS A+V+ D TGRS+G+GFV F + + A+ ++ G + +RQ+R AT
Sbjct: 227 PSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIA 286
Query: 223 EEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQLDLHRHFHA 282
++Q+S ++ +GS+ S SD N T++VG + + DL + F
Sbjct: 287 NQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTN---ATIFVGGIDPDVIDEDLRQPFSQ 343
Query: 283 LGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILCGKQIKCSWG 333
G + V++ KG GFV+++ A AI+ N +++ ++ SWG
Sbjct: 344 FGE--VVSVKIPVGKGCGFVQFADRKSAEDAIESLNG-TVIGKNTVRLSWG 391
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 149/315 (47%), Gaps = 36/315 (11%)
Query: 33 PPQIEPIPSGNLPPGFDPSTC---RSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKE 89
PPQ+ P PP P+T R++++G++ + E L FA TG + K+ R +
Sbjct: 39 PPQMW-NPQAAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNK 97
Query: 90 KSS----YGFIHYFDRRSAALAILTLNGRHLFGQP---IKVNWA-YASGQREDTSGHYNI 141
++ YGFI + +A + T N + P ++NWA +SG + D S Y I
Sbjct: 98 QTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTI 157
Query: 142 FVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
FVGDL+ +VTD L F + YPS A+V+ D+ TGR++G+GFV F + + A+ ++
Sbjct: 158 FVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEM 217
Query: 201 TGKWLGSRQIRCNWAT--KGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQ 258
G +R +R A KG G + S V +N+P
Sbjct: 218 NGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTT------------------DNDPN 259
Query: 259 YTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 318
TTV+VG L + T L F G I V++ K GFV++S + A A++M N
Sbjct: 260 NTTVFVGGLDASVTDDHLKNVFSQYGE--IVHVKIPAGKRCGFVQFSEKSCAEEALRMLN 317
Query: 319 TQSILCGKQIKCSWG 333
L G ++ SWG
Sbjct: 318 GVQ-LGGTTVRLSWG 331
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 147/290 (50%), Gaps = 29/290 (10%)
Query: 53 CRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSSY----GFIHYFDRRSAALAI 108
RS+++G++ + E L VF TG K+ R +++ Y GFI + + +A +
Sbjct: 79 IRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNL 138
Query: 109 LTLNGRHLFG--QPIKVNWA-YASGQREDTSG-HYNIFVGDLSPEVTDATLFACF-SVYP 163
T NG + Q ++NWA +G+R G + +FVGDL+P+VTD L F +VY
Sbjct: 139 QTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYS 198
Query: 164 SCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNE 223
S A+V+ D+ TGRS+G+GFV F + + A+ ++ G++ SR +R A
Sbjct: 199 SVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAAN------ 252
Query: 224 EKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQLDLHRHFHAL 283
K + + S ++ + ++ E++P TT++VG + T+ DL F
Sbjct: 253 -------KKPLTMQPASYQN----TQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQF 301
Query: 284 GAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILCGKQIKCSWG 333
G V V++ K GFV+Y+ A A A+ + N + L G+ I+ SWG
Sbjct: 302 GELV--HVKIPAGKRCGFVQYANRACAEQALSVLNG-TQLGGQSIRLSWG 348
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 145/293 (49%), Gaps = 29/293 (9%)
Query: 51 STCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRK----EKSSYGFIHYFDRRSAAL 106
S +S+++G++ + E + VFA +G K+ R + YGFI + A
Sbjct: 57 SDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAER 116
Query: 107 AILTLNGRHLFG--QPIKVNWAYASG--QREDTSG-HYNIFVGDLSPEVTDATLFACF-S 160
+ T NG + Q ++NWA A +R T G + IFVGDL+PEVTD L F +
Sbjct: 117 VLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKN 176
Query: 161 VYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 220
VY S A+V+ D+ TGRS+G+GFV F + + A+ ++ G++ +R +R A
Sbjct: 177 VYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAA---- 232
Query: 221 GNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQLDLHRHF 280
K+ + + ++ ++A +N+P TT++VG L + T +L F
Sbjct: 233 ---------NKNALPMQPAMYQN---TQGANAGDNDPNNTTIFVGGLDANVTDDELKSIF 280
Query: 281 HALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILCGKQIKCSWG 333
G + V++ K GFV+Y+ A A A+ + N + L G+ I+ SWG
Sbjct: 281 GQFGE--LLHVKIPPGKRCGFVQYANKASAEHALSVLNG-TQLGGQSIRLSWG 330
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 143/295 (48%), Gaps = 36/295 (12%)
Query: 54 RSVYVGNIHTQVTELLLQEVFAGTGPVE--GCKLFRKEKSS----YGFIHYFDRRSAALA 107
++++VG++H + E L FA E K+ R + + YGF+ + A
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Query: 108 ILTLNGRHL--FGQPIKVNWA-YASGQR--EDTSGHYNIFVGDLSPEVTDATLFACFS-V 161
+ NG + QP ++NWA +++G++ E+ +IFVGDLSP+V+D L FS
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220
Query: 162 YPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGG 221
YPS A+V+ D TGRS+G+GFV F + + A+ ++ G SR +R AT
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP---- 276
Query: 222 NEEKQNSDTKSVVELTNGSSEDGKEISNSDA--PENNPQYTTVYVGNLGSEATQLDLHRH 279
TNG + G + N PE + TT++VG L S T DL +
Sbjct: 277 -------------RKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQP 323
Query: 280 FHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILCGKQ-IKCSWG 333
F+ G I V++ KG GFV++ A A++ N + GKQ ++ SWG
Sbjct: 324 FNEFGE--IVSVKIPVGKGCGFVQFVNRPNAEEALEKLN--GTVIGKQTVRLSWG 374
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 77/187 (41%), Gaps = 28/187 (14%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGP-VEGCKLFRKEKSS----YGFIHYFDRRSAALAIL 109
S++VG++ V++ LL E F+ P V+ K+ + YGF+ + D A+
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 110 TLNG--------RHLFGQPIKVNWAYASG---------QREDTSGHYNIFVGDLSPEVTD 152
+NG R P K N G + E + IFVG L VTD
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTD 317
Query: 153 ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRC 212
L F+ + ++ +G GFV F ++ +A+ A+ L G +G + +R
Sbjct: 318 EDLKQPFNEFGEIVSVKI------PVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRL 371
Query: 213 NWATKGA 219
+W A
Sbjct: 372 SWGRNPA 378
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 135/287 (47%), Gaps = 35/287 (12%)
Query: 33 PPQIEPIPSGNLPPGFDPSTC---RSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKE 89
PPQ+ P PP P+T R++++G++ + E L FA TG + K+ R +
Sbjct: 39 PPQMW-NPQAAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNK 97
Query: 90 KSS----YGFIHYFDRRSAALAILTLNGRHLFGQP---IKVNWA-YASGQREDTSGHYNI 141
++ YGFI + +A + T N + P ++NWA +SG + D S Y I
Sbjct: 98 QTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTI 157
Query: 142 FVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
FVGDL+ +VTD L F + YPS A+V+ D+ TGR++G+GFV F + + A+ ++
Sbjct: 158 FVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEM 217
Query: 201 TGKWLGSRQIRCNWAT--KGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQ 258
G +R +R A KG G + S V +N+P
Sbjct: 218 NGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTT------------------DNDPN 259
Query: 259 YTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYS 305
TTV+VG L + T L F G I V++ K GFV++S
Sbjct: 260 NTTVFVGGLDASVTDDHLKNVFSQYGE--IVHVKIPAGKRCGFVQFS 304
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 108/196 (55%), Gaps = 8/196 (4%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAILT 110
+VYVG + Q++E LL E+F GPV + + ++ YGFI Y A AI
Sbjct: 26 TVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKV 85
Query: 111 LNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPS-CSDAR 169
LN L G+PI+VN A + D N+F+G+L P+V + L+ FS + S+ +
Sbjct: 86 LNMIKLHGKPIRVNKASQDKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIASNPK 143
Query: 170 VMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSD 229
+M D TG SRGFGF+S+ S + + +AI +TG++L +RQI ++A K E+ +
Sbjct: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYK-KDTKGERHGTP 202
Query: 230 TKSVVELTNGSSEDGK 245
+ ++ TN +++ +
Sbjct: 203 AERLLAATNPTAQKSR 218
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 140/295 (47%), Gaps = 36/295 (12%)
Query: 54 RSVYVGNIHTQVTELLLQEVFAGTGPVE--GCKLFRKEKSS----YGFIHYFDRRSAALA 107
++++VG++ + E L F E K+ R + + YGF+ + A
Sbjct: 103 KTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKV 162
Query: 108 ILTLNGRHL--FGQPIKVNWA-YASGQR--EDTSGHYNIFVGDLSPEVTDATLFACFS-V 161
+ NG + QP ++NWA +++G++ E+ +IFVGDL+P+V+DA L FS
Sbjct: 163 LQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEK 222
Query: 162 YPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGG 221
YPS A+V+ D TGRS+G+GFV F + + A+ ++ G SR +R AT
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP---- 278
Query: 222 NEEKQNSDTKSVVELTNGSSEDGKEISNS--DAPENNPQYTTVYVGNLGSEATQLDLHRH 279
TNG + G + + E + TT++VG L S T DL +
Sbjct: 279 -------------RKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQP 325
Query: 280 FHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILCGKQ-IKCSWG 333
F G I V++ KG GFV++ A A++ N + GKQ ++ SWG
Sbjct: 326 FSEFGE--IVSVKIPVGKGCGFVQFVNRPNAEEALEKLN--GTVIGKQTVRLSWG 376
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 28/187 (14%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGP-VEGCKLFRKEKSS----YGFIHYFDRRSAALAIL 109
S++VG++ V++ LL E F+ P V+ K+ + YGF+ + D A+
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 110 TLNG--------RHLFGQPIKVNWAYASG---------QREDTSGHYNIFVGDLSPEVTD 152
+NG R P K N G + E + + IFVG L VTD
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTD 319
Query: 153 ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRC 212
L FS + ++ +G GFV F ++ +A+ A+ L G +G + +R
Sbjct: 320 EDLKQPFSEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRL 373
Query: 213 NWATKGA 219
+W A
Sbjct: 374 SWGRNPA 380
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 128/295 (43%), Gaps = 43/295 (14%)
Query: 49 DPSTCRS----VYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRK---EKSSYGFIHYFDR 101
DPS +S +++ N+ + L E F+ GP+ CK+ + YGF+ Y
Sbjct: 124 DPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTD 183
Query: 102 RSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHY----NIFVGDLSPEVTDATL-- 155
+A AI LNG L + + V QR D SG N++V +LS ++D L
Sbjct: 184 EAAQGAIDKLNGMLLNDKQVYVGPFVHKLQR-DPSGEKVKFTNVYVKNLSESLSDEELNK 242
Query: 156 -FACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNW 214
F F V SC V+ G+S+GFGFV+F + DA A++ L GK ++ W
Sbjct: 243 VFGEFGVTTSC----VIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKE----W 294
Query: 215 ATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQL 274
A E++ EL + KE ++ Q + +YV NL T
Sbjct: 295 FVGKAQKKSERE-------TELKQKFEQSLKEAADKS------QGSNLYVKNLDESVTDD 341
Query: 275 DLHRHFHALGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTQSILC 324
L HF G I +V RD +G GFV +ST EA AI N + I+
Sbjct: 342 KLREHFAPF--GTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVT 394
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 121/277 (43%), Gaps = 42/277 (15%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFR----KEKSSYGFIHYFDRRSAALAILT 110
S+YVG++ VT+ L E F G V ++ R + YG+++Y + A+ A+
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 111 LNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARV 170
LN L G+ I+V ++ SG NIF+ +L + L FS + +V
Sbjct: 106 LNFMALNGRAIRVMYSVRDPSLR-KSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKV 164
Query: 171 MWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDT 230
D +G+S+G+GFV + + + AQ AI+ L G L +Q+ G K D
Sbjct: 165 AVD-PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV-------GPFVHKLQRDP 216
Query: 231 KSVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEE 290
G+++ ++T VYV NL + +L++ F GV
Sbjct: 217 S------------GEKV----------KFTNVYVKNLSESLSDEELNKVFGEF--GVTTS 252
Query: 291 VRVQRD-----KGFGFVRYSTHAEAALAIQMGNTQSI 322
+ RD KGFGFV + +AA A+ N ++
Sbjct: 253 CVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTF 289
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 19/181 (10%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRK---EKSSYGFIHYFDRRSAALAILTL 111
+VYV N+ +++ L +VF G C + R + +GF+++ + AA A+ L
Sbjct: 225 NVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 112 NGRHLFGQPIKVNWAYASGQRE---------------DTSGHYNIFVGDLSPEVTDATLF 156
NG+ + V A +RE D S N++V +L VTD L
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 157 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWAT 216
F+ + + + +VM D +G SRG GFV+F + ++A AI ++ GK + ++ + A
Sbjct: 345 EHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQ 403
Query: 217 K 217
+
Sbjct: 404 R 404
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 82/195 (42%), Gaps = 37/195 (18%)
Query: 137 GHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSA 196
G +++VGDL VTD+ LF F+ RV D T RS G+G+V++ + QDA A
Sbjct: 43 GTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRA 102
Query: 197 INDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENN 256
+N+L L R IR ++ + S KS V
Sbjct: 103 LNELNFMALNGRAIRVMYSVRDP--------SLRKSGV---------------------- 132
Query: 257 PQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALA 313
+++ NL LH F A G + +V V + KG+GFV+Y T A A
Sbjct: 133 ---GNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGA 189
Query: 314 IQMGNTQSILCGKQI 328
I N +L KQ+
Sbjct: 190 IDKLNGM-LLNDKQV 203
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 128/295 (43%), Gaps = 43/295 (14%)
Query: 49 DPSTCRS----VYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRK---EKSSYGFIHYFDR 101
DPS +S +++ N+ + L E F+ GP+ CK+ + YGF+ Y
Sbjct: 124 DPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTD 183
Query: 102 RSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHY----NIFVGDLSPEVTDATL-- 155
+A AI LNG L + + V QR D SG N++V +LS ++D L
Sbjct: 184 EAAQGAIDKLNGMLLNDKQVYVGPFVHKLQR-DPSGEKVKFTNVYVKNLSESLSDEELNK 242
Query: 156 -FACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNW 214
F F V SC V+ G+S+GFGFV+F + DA A++ L GK ++ W
Sbjct: 243 VFGEFGVTTSC----VIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKE----W 294
Query: 215 ATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQL 274
A E++ EL + KE ++ Q + +YV NL T
Sbjct: 295 FVGKAQKKSERE-------TELKQKFEQSLKEAADKS------QGSNLYVKNLDESVTDD 341
Query: 275 DLHRHFHALGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTQSILC 324
L HF G I +V RD +G GFV +ST EA AI N + I+
Sbjct: 342 KLREHFAPF--GTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVT 394
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 121/277 (43%), Gaps = 42/277 (15%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFR----KEKSSYGFIHYFDRRSAALAILT 110
S+YVG++ VT+ L E F G V ++ R + YG+++Y + A+ A+
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 111 LNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARV 170
LN L G+ I+V ++ SG NIF+ +L + L FS + +V
Sbjct: 106 LNFMALNGRAIRVMYSVRDPSLR-KSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKV 164
Query: 171 MWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDT 230
D +G+S+G+GFV + + + AQ AI+ L G L +Q+ G K D
Sbjct: 165 AVD-PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV-------GPFVHKLQRDP 216
Query: 231 KSVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEE 290
G+++ ++T VYV NL + +L++ F GV
Sbjct: 217 S------------GEKV----------KFTNVYVKNLSESLSDEELNKVFGEF--GVTTS 252
Query: 291 VRVQRD-----KGFGFVRYSTHAEAALAIQMGNTQSI 322
+ RD KGFGFV + +AA A+ N ++
Sbjct: 253 CVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTF 289
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 19/181 (10%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRK---EKSSYGFIHYFDRRSAALAILTL 111
+VYV N+ +++ L +VF G C + R + +GF+++ + AA A+ L
Sbjct: 225 NVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 112 NGRHLFGQPIKVNWAYASGQRE---------------DTSGHYNIFVGDLSPEVTDATLF 156
NG+ + V A +RE D S N++V +L VTD L
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 157 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWAT 216
F+ + + + +VM D +G SRG GFV+F + ++A AI ++ GK + ++ + A
Sbjct: 345 EHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQ 403
Query: 217 K 217
+
Sbjct: 404 R 404
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 82/195 (42%), Gaps = 37/195 (18%)
Query: 137 GHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSA 196
G +++VGDL VTD+ LF F+ RV D T RS G+G+V++ + QDA A
Sbjct: 43 GTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRA 102
Query: 197 INDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENN 256
+N+L L R IR ++ + S KS V
Sbjct: 103 LNELNFMALNGRAIRVMYSVRDP--------SLRKSGV---------------------- 132
Query: 257 PQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALA 313
+++ NL LH F A G + +V V + KG+GFV+Y T A A
Sbjct: 133 ---GNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGA 189
Query: 314 IQMGNTQSILCGKQI 328
I N +L KQ+
Sbjct: 190 IDKLNGM-LLNDKQV 203
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 124/276 (44%), Gaps = 39/276 (14%)
Query: 55 SVYVGNIHTQVTELLLQEVF---AGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTL 111
S+Y G++ +VTE L ++F A V C+ + Y +I++ + A A+ L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 112 NGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 171
N LF +PI++ + SG NIF+ +L + + LF FS + + +V
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTR-LSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVA 168
Query: 172 WDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDTK 231
D TGRS+G+GFV F ++ AQ+AI+ L G + +Q+ + E ++ +T
Sbjct: 169 MD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIR---RQERARDENTP 224
Query: 232 SVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEV 291
+ P++T VYV NL E + +L + F GVI
Sbjct: 225 T------------------------PRFTNVYVKNLPKEIGEDELRKTFGKF--GVISSA 258
Query: 292 RVQRDKG-----FGFVRYSTHAEAALAIQMGNTQSI 322
V RD+ FGFV + AA A++ N S+
Sbjct: 259 VVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISL 294
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 113/289 (39%), Gaps = 33/289 (11%)
Query: 49 DPSTCRS----VYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRK---EKSSYGFIHYFDR 101
DPST S +++ N+ + L E F+ G + CK+ YGF+ +
Sbjct: 127 DPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKE 186
Query: 102 RSAALAILTLNGRHLFGQPIKV-----NWAYASGQREDTSGHYNIFVGDLSPEVTDATLF 156
SA AI LNG + + + V A + T N++V +L E+ + L
Sbjct: 187 ESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELR 246
Query: 157 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWAT 216
F + S A VM DQ +G SR FGFV+F + A SA+ + G LG + A
Sbjct: 247 KTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQ 305
Query: 217 KGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQLDL 276
K + EE + + + S Q +Y+ NL L
Sbjct: 306 KKSEREEELRRKFEQERINRFEKS-----------------QGANLYLKNLDDSVDDEKL 348
Query: 277 HRHFHALGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAIQMGNTQSI 322
F G +V + +GFGFV YS EA A+ N + I
Sbjct: 349 KEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMI 397
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 89/181 (49%), Gaps = 19/181 (10%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS---YGFIHYFDRRSAALAILTL 111
+VYV N+ ++ E L++ F G + + R + + +GF+++ +AA A+ +
Sbjct: 230 NVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 112 NGRHLFGQPIKVNWAYASGQRED---------------TSGHYNIFVGDLSPEVTDATLF 156
NG L + V A +RE+ S N+++ +L V D L
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLK 349
Query: 157 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWAT 216
FS Y + + ++VM + + G SRGFGFV++ + ++A A++++ GK +G + + A
Sbjct: 350 EMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQ 408
Query: 217 K 217
+
Sbjct: 409 R 409
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 126/267 (47%), Gaps = 27/267 (10%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS--YGFIHYFDRRSAALAILTLN 112
++YV N+ + +T L+ +F G + CK+ + S +GF+ + +SA A L+
Sbjct: 113 NLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALH 172
Query: 113 GRHLFGQPIKVNWAYASGQREDTSGHY---NIFVGDLSPEVTDATLFACFSVYPSCSDAR 169
G ++G+ + V +R +G+ N++V +L VTD L FS Y + S
Sbjct: 173 GSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVV 232
Query: 170 VMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSD 229
VM D GRSRGFGFV+F + ++A+ A+ L G LGS+++ + K +E ++
Sbjct: 233 VMRD-GMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKL---FVGKALKKDERREMLK 288
Query: 230 TKSVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIE 289
K S++ + N +++ +YV NL + L F G V
Sbjct: 289 QK---------------FSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSA 333
Query: 290 EVRVQ---RDKGFGFVRYSTHAEAALA 313
+V R KGFGFV +S E+ A
Sbjct: 334 KVMCHENGRSKGFGFVCFSNCEESKQA 360
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 123/285 (43%), Gaps = 50/285 (17%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRK----EKSSYGFIHYFDRRSAALAILT 110
S+YVG++ VTE L + F+ PV L R + Y +I++ SA+ A+
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 111 LNGRHLFGQPIKVNWAY--ASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDA 168
LN L G+ +++ W+ + +R +G N++V +L +T + L F + S
Sbjct: 82 LNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSC 141
Query: 169 RVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNS 228
+V+ ++ G+S+GFGFV F ++Q A SA + L G + +++ + K +E
Sbjct: 142 KVV--EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKL---FVAKFINKDERA--- 193
Query: 229 DTKSVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVI 288
A N T VYV NL T LH F G +
Sbjct: 194 -----------------------AMAGNQDSTNVYVKNLIETVTDDCLHTLFSQY--GTV 228
Query: 289 EEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTQSILCGKQI 328
V V RD +GFGFV + A A++ LCG Q+
Sbjct: 229 SSVVVMRDGMGRSRGFGFVNFCNPENAKKAMES------LCGLQL 267
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 18/173 (10%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRK---EKSSYGFIHYFDRRSAALAILTL 111
+VYV N+ VT+ L +F+ G V + R +GF+++ + +A A+ +L
Sbjct: 203 NVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESL 262
Query: 112 NGRHLFGQPIKVNWAYASGQREDT-----SGHY---------NIFVGDLSPEVTDATLFA 157
G L + + V A +R + S ++ N++V +LS + + L
Sbjct: 263 CGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLRE 322
Query: 158 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQI 210
F Y A+VM + GRS+GFGFV F + ++++ A L G + + I
Sbjct: 323 IFGCYGQIVSAKVMCHE-NGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPI 374
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 127/273 (46%), Gaps = 42/273 (15%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFR----KEKSSYGFIHYFDRRSAALAILT 110
S+YVG++ VT+ L + F G V ++ R + YG++++ + + AA AI
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 111 LNGRHLFGQPIKVNWAY--ASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDA 168
LN L+G+PI+V +++ S +R SG NIF+ +L + L FS + +
Sbjct: 97 LNYIPLYGKPIRVMYSHRDPSVRR---SGAGNIFIKNLDESIDHKALHDTFSSFGNIVSC 153
Query: 169 RVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNS 228
+V D +G+S+G+GFV + +++ AQ AI L G L +Q+ G +Q
Sbjct: 154 KVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV-------GPFLRRQER 205
Query: 229 DTKSVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQLDLHRHFHALG---A 285
D+ + N ++T VYV NL T DL F G +
Sbjct: 206 DSTA----------------------NKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITS 243
Query: 286 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 318
V+ + + KGFGFV + +AA A++ N
Sbjct: 244 AVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 127/297 (42%), Gaps = 41/297 (13%)
Query: 49 DPSTCRS----VYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRK---EKSSYGFIHYFDR 101
DPS RS +++ N+ + L + F+ G + CK+ + YGF+ Y +
Sbjct: 115 DPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANE 174
Query: 102 RSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHY---NIFVGDLSPEVTDATLFAC 158
SA AI LNG L + + V +R+ T+ N++V +L+ TD L
Sbjct: 175 ESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNA 234
Query: 159 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKG 218
F Y + A VM D + G+S+GFGFV+F + DA A+ L G ++ W
Sbjct: 235 FGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKE----WYV-- 287
Query: 219 AGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQLDLHR 278
G ++K +T+ V E + +S+ +YV NL + L
Sbjct: 288 -GRAQKKSERETELRVRYEQNLKEAADKFQSSN----------LYVKNLDPSISDEKLKE 336
Query: 279 HFHALGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTQSILCGKQIKC 330
F G + +V RD KG GFV ++T EA A+ S L GK I+
Sbjct: 337 IFSPF--GTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAM------SQLSGKMIES 385
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 19/181 (10%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRK---EKSSYGFIHYFDRRSAALAILTL 111
+VYV N+ T+ L+ F G + + + + +GF+++ + AA A+ +L
Sbjct: 216 NVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESL 275
Query: 112 NGRHLFGQPIKVNWAYASGQRE---------------DTSGHYNIFVGDLSPEVTDATLF 156
NG + V A +RE D N++V +L P ++D L
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 335
Query: 157 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWAT 216
FS + + + ++VM D G S+G GFV+F + ++A A++ L+GK + S+ + A
Sbjct: 336 EIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQ 394
Query: 217 K 217
+
Sbjct: 395 R 395
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 120/279 (43%), Gaps = 31/279 (11%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRK---EKSSYGFIHYFDRRSAALAILTL 111
+++V N+ V L E F+G G + CK+ + YGF+ + SA AI L
Sbjct: 135 NLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 112 NGRHLFGQPIKVNWAYASGQRE---DTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDA 168
NG+ L + I V +RE D N++V +LS TD L F Y S S A
Sbjct: 195 NGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSA 254
Query: 169 RVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNS 228
VM D G+SR FGFV+F + +DA A+ L GK ++ W G ++K
Sbjct: 255 VVMRD-GDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKE----WYV---GKAQKKSER 306
Query: 229 DTKSVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVI 288
+ + GSS+ G + +YV NL T L F G I
Sbjct: 307 ELELSRRYEQGSSDGGNKFDG----------LNLYVKNLDDTVTDEKLRELFAEFG--TI 354
Query: 289 EEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTQSI 322
+V RD KG GFV +S +EA+ + N + +
Sbjct: 355 TSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMV 393
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 121/273 (44%), Gaps = 42/273 (15%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAILT 110
S+YVG++ VT+ L + F V ++ R ++ YG+++Y + A A+
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 111 LNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARV 170
LN +L G+ I++ ++ SG N+FV +L V + TL FS + +V
Sbjct: 107 LNYSYLNGKMIRITYSSRD-SSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKV 165
Query: 171 MWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDT 230
D G+SRG+GFV F ++ A++AI L GK L +QI + EE++++
Sbjct: 166 ATDH-MGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLR----KEERESAAD 220
Query: 231 KSVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEE 290
K ++T VYV NL T +L F G+ I
Sbjct: 221 KM-------------------------KFTNVYVKNLSEATTDDELKTTFGQYGS--ISS 253
Query: 291 VRVQRD-----KGFGFVRYSTHAEAALAIQMGN 318
V RD + FGFV + +AA A++ N
Sbjct: 254 AVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 19/181 (10%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRK---EKSSYGFIHYFDRRSAALAILTL 111
+VYV N+ T+ L+ F G + + R + +GF+++ + AA A+ L
Sbjct: 226 NVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEAL 285
Query: 112 NGRHLFGQPIKVNWAYASGQRE-DTSGHY--------------NIFVGDLSPEVTDATLF 156
NG+ + V A +RE + S Y N++V +L VTD L
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 157 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWAT 216
F+ + + + +VM D +G S+G GFV+F + +A +N++ GK +G + + A
Sbjct: 346 ELFAEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQ 404
Query: 217 K 217
+
Sbjct: 405 R 405
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 125/274 (45%), Gaps = 35/274 (12%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEG---CKLFRKEKSSYGFIHYFDRRSAALAILTL 111
S+YVG++ V E L ++F PV C+ Y ++++ + A+ A+ +L
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 119
Query: 112 NGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 171
N + +PI++ + SG N+F+ +L + + L+ FS + + +V
Sbjct: 120 NYAPIRDRPIRIMLSNRDPSTR-LSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVA 178
Query: 172 WDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDTK 231
D GRS+G+GFV F ++ AQ+AI+ L G L +Q+ + +++ S++
Sbjct: 179 MD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVR----RQDRARSESG 233
Query: 232 SVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQLDLHRHFHALG---AGVI 288
+V P +T VYV NL E T +L + F G + V+
Sbjct: 234 AV-----------------------PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVV 270
Query: 289 EEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSI 322
+ + + FGFV + + AA+A++ N S+
Sbjct: 271 MKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISL 304
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 120/292 (41%), Gaps = 39/292 (13%)
Query: 49 DPSTCRS----VYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRK---EKSSYGFIHYFDR 101
DPST S V++ N+ + L E F+ G + CK+ YGF+ +
Sbjct: 137 DPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKE 196
Query: 102 RSAALAILTLNGRHLFGQPIKV-NWAYASGQREDTSGHY----NIFVGDLSPEVTDATLF 156
+A AI LNG L + + V ++ + SG N++V +L E+TD L
Sbjct: 197 ETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELK 256
Query: 157 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWAT 216
F Y S A VM DQ +G SR FGFV+F S + A A+ + G LG + A
Sbjct: 257 KTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQ 315
Query: 217 KGAGGNEE---KQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQ 273
K + EE K + S E GS+ +Y+ NL
Sbjct: 316 KKSDREEELRRKFEQERISRFEKLQGSN--------------------LYLKNLDDSVND 355
Query: 274 LDLHRHFHALGAGVIEEVRVQR---DKGFGFVRYSTHAEAALAIQMGNTQSI 322
L F G +V + +GFGFV YS EA LA++ N + I
Sbjct: 356 EKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMI 407
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 91/190 (47%), Gaps = 23/190 (12%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEK---SSYGFIHYFDRRSAALAILTL 111
+VYV N+ ++T+ L++ F G + + + + S+GF+++ +AA+A+ +
Sbjct: 240 NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 112 NGRHLFGQPIKVNWAYASGQREDTSGHY---------------NIFVGDLSPEVTDATLF 156
NG L + V A RE+ N+++ +L V D L
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 359
Query: 157 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWAT 216
FS Y + + +VM + + G SRGFGFV++ + ++A A+ ++ GK +G + + A
Sbjct: 360 EMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQ 418
Query: 217 KGAGGNEEKQ 226
+ EE+Q
Sbjct: 419 R----KEERQ 424
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 125/274 (45%), Gaps = 35/274 (12%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEG---CKLFRKEKSSYGFIHYFDRRSAALAILTL 111
S+YVG++ V E L ++F PV C+ Y ++++ + A+ A+ +L
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 119
Query: 112 NGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 171
N + +PI++ + SG N+F+ +L + + L+ FS + + +V
Sbjct: 120 NYAPIRDRPIRIMLSNRDPSTR-LSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVA 178
Query: 172 WDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDTK 231
D GRS+G+GFV F ++ AQ+AI+ L G L +Q+ + +++ S++
Sbjct: 179 MD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVR----RQDRARSESG 233
Query: 232 SVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQLDLHRHFHALG---AGVI 288
+V P +T VYV NL E T +L + F G + V+
Sbjct: 234 AV-----------------------PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVV 270
Query: 289 EEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSI 322
+ + + FGFV + + AA+A++ N S+
Sbjct: 271 MKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISL 304
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 120/292 (41%), Gaps = 39/292 (13%)
Query: 49 DPSTCRS----VYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRK---EKSSYGFIHYFDR 101
DPST S V++ N+ + L E F+ G + CK+ YGF+ +
Sbjct: 137 DPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKE 196
Query: 102 RSAALAILTLNGRHLFGQPIKV-NWAYASGQREDTSGHY----NIFVGDLSPEVTDATLF 156
+A AI LNG L + + V ++ + SG N++V +L E+TD L
Sbjct: 197 ETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELK 256
Query: 157 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWAT 216
F Y S A VM DQ +G SR FGFV+F S + A A+ + G LG + A
Sbjct: 257 KTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQ 315
Query: 217 KGAGGNEE---KQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQ 273
K + EE K + S E GS+ +Y+ NL
Sbjct: 316 KKSDREEELRRKFEQERISRFEKLQGSN--------------------LYLKNLDDSVND 355
Query: 274 LDLHRHFHALGAGVIEEVRVQR---DKGFGFVRYSTHAEAALAIQMGNTQSI 322
L F G +V + +GFGFV YS EA LA++ N + I
Sbjct: 356 EKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMI 407
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 91/190 (47%), Gaps = 23/190 (12%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEK---SSYGFIHYFDRRSAALAILTL 111
+VYV N+ ++T+ L++ F G + + + + S+GF+++ +AA+A+ +
Sbjct: 240 NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 112 NGRHLFGQPIKVNWAYASGQREDTSGHY---------------NIFVGDLSPEVTDATLF 156
NG L + V A RE+ N+++ +L V D L
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 359
Query: 157 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWAT 216
FS Y + + +VM + + G SRGFGFV++ + ++A A+ ++ GK +G + + A
Sbjct: 360 EMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQ 418
Query: 217 KGAGGNEEKQ 226
+ EE+Q
Sbjct: 419 R----KEERQ 424
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 54 RSVYVGNIHTQVTELLLQEVFAGTGPVE--GCKLFRKEKSS----YGFIHYFDRRSAALA 107
++++VG++H + E L FA E K+ R + + YGF+ + A
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Query: 108 ILTLNGRHL--FGQPIKVNWA-YASGQR--EDTSGHYNIFVGDLSPEVTDATLFACFS-V 161
+ NG + QP ++NWA +++G++ E+ +IFVGDLSP+V+D L FS
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220
Query: 162 YPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWAT 216
YPS A+V+ D TGRS+G+GFV F + + A+ ++ G SR +R AT
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPAT 275
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 120/277 (43%), Gaps = 52/277 (18%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAILT 110
S+YVG++H VTE +L + FA + +L + S YG+ ++ R+ A LAI
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 111 LNGRHLFGQPIKVNWAY-ASGQREDTSGHYNIFVGDLSPEVTDATL---FACFSVYPSCS 166
N L G+ I+V W+ A R + G N+FV +L VT+A L F F SC
Sbjct: 85 KNNSLLNGKMIRVMWSVRAPDARRNGVG--NVFVKNLPESVTNAVLQDMFKKFGNIVSCK 142
Query: 167 DARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQ 226
A + + G+SRG+GFV F + A +AI L + ++I
Sbjct: 143 VATL----EDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYV-------------- 184
Query: 227 NSDTKSVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAG 286
GK + +D + +YT +Y+ NL ++ ++ L F G
Sbjct: 185 -----------------GKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGK- 226
Query: 287 VIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGN 318
I + + +D +G+ FV + +A A + N
Sbjct: 227 -IVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 120/270 (44%), Gaps = 29/270 (10%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS---YGFIHYFDRRSAALAILTL 111
+V+V N+ VT +LQ++F G + CK+ E YGF+ + +A AI TL
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 112 NGRHLFGQPIKVNWAYASGQREDTSGHY-NIFVGDLSPEVTDATLFACFSVYPSCSDARV 170
N + + I V R Y N+++ +L +V++ L F+ + +
Sbjct: 173 NSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAI 232
Query: 171 MWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDT 230
D+ RG+ FV+F + +DA+ A + G GS+ C + G +K+
Sbjct: 233 AKDENR-LCRGYAFVNFDNPEDARRAAETVNGTKFGSK---CLYV-----GRAQKKAERE 283
Query: 231 KSVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEE 290
+ + E E+ K I+ + + +YV N+ T+ +L +HF G I
Sbjct: 284 QLLREQFKEKHEEQKMIA---------KVSNIYVKNVNVAVTEEELRKHFSQ--CGTITS 332
Query: 291 VRVQRD-----KGFGFVRYSTHAEAALAIQ 315
++ D KGFGFV +ST EA A++
Sbjct: 333 TKLMCDEKGKSKGFGFVCFSTPEEAIDAVK 362
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 102/230 (44%), Gaps = 29/230 (12%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKS---SYGFIHYFDRRSAALAILTL 111
++Y+ N+ V+E LL+E FA G + + + E Y F+++ + A A T+
Sbjct: 202 NLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETV 261
Query: 112 NGRHLFGQPIKVNWAYASGQRED---------------TSGHYNIFVGDLSPEVTDATLF 156
NG + + V A +RE + NI+V +++ VT+ L
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 157 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWAT 216
FS + + ++M D+K G+S+GFGFV F + ++A A+ G+ + + A
Sbjct: 322 KHFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQ 380
Query: 217 KGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGN 266
K D K +++ G+ + ++ S+S A N Y +Y N
Sbjct: 381 K---------KEDRKMQLQVQFGNRVEARK-SSSSASVNPGTYAPLYYTN 420
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 49 DPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSA 104
+PS ++VGN+ V L +F G VE ++ ++ +GF+ A
Sbjct: 145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEA 204
Query: 105 ALAILTLNGRHLFGQPIKVNWAYASGQREDTSGH-----YNIFVGDLSPEVTDATLFACF 159
A+ N L G+ + VN A G R + + + ++VG+L +V + L F
Sbjct: 205 ETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF 264
Query: 160 SVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATK 217
S + +ARV++D++TGRSRGFGFV+ + AI+ L G+ L R IR N A +
Sbjct: 265 SEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 322
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 119/284 (41%), Gaps = 27/284 (9%)
Query: 49 DPSTCRS----VYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEK---SSYGFIHYFDR 101
DPS S V+V N+ + L ++F+ G V CK+ R YGF+ ++
Sbjct: 22 DPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSD 81
Query: 102 RSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSV 161
S A NG + Q I V + GQ + + N++V +L TDA L F
Sbjct: 82 LSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGE 141
Query: 162 YPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGG 221
+ + A VM D + G+SR FGFV+F + A +AI + G + +++ A +
Sbjct: 142 FGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNR 200
Query: 222 NEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQLDLHRHFH 281
E D K+ EL K I + + +YV NL L F
Sbjct: 201 TE-----DLKAKFELE-------KIIRDMKTRKG----MNLYVKNLDDSVDNTKLEELFS 244
Query: 282 ALGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTQSI 322
G +V V + KG GFV +ST EA+ A+ N + +
Sbjct: 245 EFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMV 288
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 20/180 (11%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRK---EKSSYGFIHYFDRRSAALAILTL 111
+VYV N+ T+ L+ +F G + + + + +GF+++ +A AI +
Sbjct: 120 NVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 112 NGRHLFGQPIKVNWAYASGQR-EDTSGHY---------------NIFVGDLSPEVTDATL 155
NG + + + V A R ED + N++V +L V + L
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKL 239
Query: 156 FACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWA 215
FS + + + +VM G S+G GFV F + ++A A+ + GK +G++ I + A
Sbjct: 240 EELFSEFGTITSCKVMV-HSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLA 298
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 28/188 (14%)
Query: 56 VYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAILTL 111
++VGN+ V L ++F G VE ++ + + +GF+ A
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 112 NGRHLFGQPIKVNWAYASGQRED------------------------TSGHYNIFVGDLS 147
NG L G+P++VN +RED ++VG+LS
Sbjct: 153 NGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLS 212
Query: 148 PEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGS 207
V D L + FS +ARV++D+ +GRS+GFGFV++ S Q+ Q+AI L G L
Sbjct: 213 WGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDG 272
Query: 208 RQIRCNWA 215
RQIR + A
Sbjct: 273 RQIRVSEA 280
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 86/208 (41%), Gaps = 13/208 (6%)
Query: 128 ASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 187
A + + S +FVG+L V A L F + V++D+ TGRSRGFGFV+
Sbjct: 80 APPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTM 139
Query: 188 RSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEI 247
S + ++A G L R +R N ++++ ++ S
Sbjct: 140 SSVSEVEAAAQQFNGYELDGRPLRVNAGPPPP----KREDGFSRGPRSSFGSSGSGYGGG 195
Query: 248 SNSDAPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRD----KGFGFVR 303
S A N VYVGNL + L F G V V RD KGFGFV
Sbjct: 196 GGSGAGSGN----RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVT 251
Query: 304 YSTHAEAALAIQMGNTQSILCGKQIKCS 331
Y + E AI+ + L G+QI+ S
Sbjct: 252 YDSSQEVQNAIKSLDGAD-LDGRQIRVS 278
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 88/189 (46%), Gaps = 18/189 (9%)
Query: 45 PPGFDPST--CRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKS----SYGFIHY 98
P DPS+ R VY+GNI VT L ++ G VE ++ + S +GF
Sbjct: 65 PAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATM 124
Query: 99 FDRRSAALAILTLNGRHLFGQPIKVNWA---YASG------QREDTS---GHYNIFVGDL 146
A + LNG + G+ IKVN AS Q ED++ Y ++VG+L
Sbjct: 125 KSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNL 184
Query: 147 SPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLG 206
+ VT L FS A+V T +S GFGFV+F S++D ++AI L L
Sbjct: 185 AKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLE 244
Query: 207 SRQIRCNWA 215
++IR N A
Sbjct: 245 GQKIRVNKA 253
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 25/194 (12%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+++G++ VT+ L + + +VM+D+ +GRSR FGF + +S +DA + + L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 201 TGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYT 260
G + R+I+ N K + +L+ SED + D+P
Sbjct: 138 NGNTVEGREIKVNITEKPIASSP-----------DLSVLQSEDSAFV---DSPYK----- 178
Query: 261 TVYVGNLGSEATQLDLHRHFHALGAGVIEEV-RV---QRDKGFGFVRYSTHAEAALAIQM 316
VYVGNL T+ L F G V +V RV + GFGFV +S+ + AI
Sbjct: 179 -VYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 317 GNTQSILCGKQIKC 330
N S+L G++I+
Sbjct: 238 LN-NSLLEGQKIRV 250
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 88/189 (46%), Gaps = 18/189 (9%)
Query: 45 PPGFDPST--CRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKS----SYGFIHY 98
P DPS+ R VY+GNI VT L ++ G VE ++ + S +GF
Sbjct: 65 PAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATM 124
Query: 99 FDRRSAALAILTLNGRHLFGQPIKVNWA---YASG------QREDTS---GHYNIFVGDL 146
A + LNG + G+ IKVN AS Q ED++ Y ++VG+L
Sbjct: 125 KSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNL 184
Query: 147 SPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLG 206
+ VT L FS A+V T +S GFGFV+F S++D ++AI L L
Sbjct: 185 AKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLE 244
Query: 207 SRQIRCNWA 215
++IR N A
Sbjct: 245 GQKIRVNKA 253
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 25/194 (12%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+++G++ VT+ L + + +VM+D+ +GRSR FGF + +S +DA + + L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 201 TGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYT 260
G + R+I+ N K + +L+ SED + D+P
Sbjct: 138 NGNTVEGREIKVNITEKPIASSP-----------DLSVLQSEDSAFV---DSPYK----- 178
Query: 261 TVYVGNLGSEATQLDLHRHFHALGAGVIEEV-RV---QRDKGFGFVRYSTHAEAALAIQM 316
VYVGNL T+ L F G V +V RV + GFGFV +S+ + AI
Sbjct: 179 -VYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 317 GNTQSILCGKQIKC 330
N S+L G++I+
Sbjct: 238 LN-NSLLEGQKIRV 250
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 83/179 (46%), Gaps = 10/179 (5%)
Query: 47 GF-DPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDR 101
GF +P ++VGN+ V L +F G VE ++ + +GF+
Sbjct: 105 GFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTV 164
Query: 102 RSAALAILTLNGRHLFGQPIKVNWAYASGQREDT-----SGHYNIFVGDLSPEVTDATLF 156
A A+ N + G+ + VN A G R + + I+VG+L +V L
Sbjct: 165 EEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLE 224
Query: 157 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWA 215
FS + DARV+ D++TGRSRGFGFV ++ + AI L G+ L R I+ N A
Sbjct: 225 RLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 18/180 (10%)
Query: 56 VYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAILTL 111
+YVGN+ +T L ++F G V ++ + + +GF+ A A+
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 112 NGRHLFGQPIKVNWAYA--SGQRE-------DTSGHY-----NIFVGDLSPEVTDATLFA 157
N + G+ +KVN+ G+ E D + Y ++ G+L +T L
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKD 237
Query: 158 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATK 217
F P A+V++++ TGRSRGFGF+SF S ++ QSA+ + G + R +R N A++
Sbjct: 238 AFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASE 297
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 32/187 (17%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
++VG+L +T + L F + D ++++D+ T RSRGFGFV+ S ++A+ A+
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 201 TGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYT 260
+G R ++ N+ GG E + + +NN Y
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGGENEVMRTKIR----------------------DNNRSYV 215
Query: 261 ----TVYVGNLGSEATQLDLHRHFH----ALGAGVIEEVRVQRDKGFGFVRYST--HAEA 310
VY GNLG T L F LGA VI E R +GFGF+ + + + ++
Sbjct: 216 DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 311 ALAIQMG 317
ALA G
Sbjct: 276 ALATMNG 282
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 16/177 (9%)
Query: 42 GNLPPGFDPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDR 101
GNLP D +T + + ++ E+L TG G + F+ +
Sbjct: 90 GNLPYNVDSATLAQIIQDFANPELVEVLYNR---DTGQSRG----------FAFVTMSNV 136
Query: 102 RSAALAILTLNGRHLFGQPIKVNWAYASGQREDT---SGHYNIFVGDLSPEVTDATLFAC 158
+ I L+G G+ +KVN+A ++ + +FVG+LS VT +L
Sbjct: 137 EDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGA 196
Query: 159 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWA 215
F ARV++D TGRSRG+GFV + S+ + ++A+ L G L R IR N A
Sbjct: 197 FRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLA 253
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+FVG LS D++L F+ + ++A V+ D++TGRSRGFGFVSF + A +AI ++
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 201 TGKWLGSRQIRCNWATK 217
GK L RQIR N AT+
Sbjct: 97 DGKELNGRQIRVNLATE 113
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+FVG LS D++L F+ + ++A V+ D++TGRSRGFGFVSF + A +AI ++
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 201 TGKWLGSRQIRCNWATK 217
GK L RQIR N AT+
Sbjct: 97 DGKELNGRQIRVNLATE 113
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 60/98 (61%), Gaps = 5/98 (5%)
Query: 139 YNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAIN 198
Y +F GDL EV D L F+ +P+ + A+V+ D++TG+++G+GFVSF + D +A+
Sbjct: 137 YRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALK 196
Query: 199 DLTGKWLGSRQI---RCNWA--TKGAGGNEEKQNSDTK 231
++ GK++G+R I + +W T +K +S+ K
Sbjct: 197 EMNGKYVGNRPIKLRKSSWKERTDQEAAERQKHHSNKK 234
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 67.4 bits (163), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 47/70 (67%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
++VG+LSP TD L FS Y + DA VM D+ T RSRGFGFV++ S +A++A++ +
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 201 TGKWLGSRQI 210
GK L R++
Sbjct: 65 DGKELNGRRV 74
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 49/75 (65%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+F+G LS DA+L F+ + DA+V+ D++TGRSRGFGFV+F + A +AI+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 201 TGKWLGSRQIRCNWA 215
GK L R IR N A
Sbjct: 97 DGKELNGRHIRVNPA 111
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 49/75 (65%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+F+G LS DA+L F+ + DA+V+ D++TGRSRGFGFV+F + A +AI+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 201 TGKWLGSRQIRCNWA 215
GK L R IR N A
Sbjct: 97 DGKELNGRHIRVNPA 111
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 49/75 (65%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+F+G LS DA+L F+ + DA+V+ D++TGRSRGFGFV+F + A +AI+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 201 TGKWLGSRQIRCNWA 215
GK L R IR N A
Sbjct: 97 DGKELNGRHIRVNPA 111
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 49/75 (65%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+F+G LS DA+L F+ + DA+V+ D++TGRSRGFGFV+F + A +AI+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 201 TGKWLGSRQIRCNWA 215
GK L R IR N A
Sbjct: 97 DGKELNGRHIRVNPA 111
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+F+G ++ + + +L F+ Y D RV+ D++TGRSRGFGFV+F S + A SAI L
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 201 TGKWLGSRQIRCNWA 215
G+ L R ++ N+A
Sbjct: 102 DGRDLHGRVVKVNYA 116
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAIND 199
IFVG LSPEVTD L FS + D ++M ++ TGRSRGFGF++F ++ +I +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 200 LTGKWLGSRQIRCNWA 215
+ G+ G R I N A
Sbjct: 68 MHGRDFGDRVISVNRA 83
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 27/175 (15%)
Query: 56 VYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAILTL 111
+++G I E LL+E F+ G V + R++ + +GF+ + D A + +
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSD--PAVIDRVLQ 65
Query: 112 NGRHLFGQPIKVNWAYASGQREDT--SGHYN---------------IFVGDLSPEVTDAT 154
+ H+ + + V A + ++ SG +N IFVG L P +T
Sbjct: 66 DKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDE 125
Query: 155 LFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDA----QSAINDLTGKWL 205
A F Y SDA +M DQ T R RGFGFVSF S+ +DL GK +
Sbjct: 126 FRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQV 180
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 23/194 (11%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+F+G +S + + L FS + VM ++ TGR RGFGFV+F + D
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK 67
Query: 201 TGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYT 260
+ +R + A + E+Q+ +S + + + G + +
Sbjct: 68 --HHIDNRDVDVKRAM-----SREEQSPAGRSGTFNASRNFDSGANV----------RTK 110
Query: 261 TVYVGNLGSEATQLDLHRHFHALG----AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQM 316
++VG L T + +F G A ++ + QR +GFGFV + + E ++ + +
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDS--EDSVDLVL 168
Query: 317 GNTQSILCGKQIKC 330
T L GKQ++
Sbjct: 169 HKTFHDLNGKQVEV 182
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
IFVG +S + L FS Y DA+++ D++TGRSRGF FV+F S ++A +A+ L
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-L 94
Query: 201 TGKWLGSRQIRCNWATK 217
G+ L R+IR N+AT+
Sbjct: 95 DGQDLHGRRIRVNYATE 111
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 47/75 (62%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
++VG+LS V D L F+ +ARV++D+ +GRS+GFGFV+ S Q+ Q AIN L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 201 TGKWLGSRQIRCNWA 215
G L RQIR + A
Sbjct: 319 NGADLDGRQIRVSEA 333
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 47/75 (62%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
++VG+LS V D L F+ +ARV++D+ +GRS+GFGFV+ S Q+ Q AIN L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 201 TGKWLGSRQIRCNWA 215
G L RQIR + A
Sbjct: 319 NGADLDGRQIRVSEA 333
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 47/75 (62%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
++VG+LS V D L F+ +ARV++D+ +GRS+GFGFV+ S Q+ Q AIN L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 201 TGKWLGSRQIRCNWA 215
G L RQIR + A
Sbjct: 319 NGADLDGRQIRVSEA 333
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 47/75 (62%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
++VG+LS V D L F+ +ARV++D+ +GRS+GFGFV+ S Q+ Q AIN L
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 339
Query: 201 TGKWLGSRQIRCNWA 215
G L RQIR + A
Sbjct: 340 NGADLDGRQIRVSEA 354
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 33/178 (18%)
Query: 56 VYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFI--------------- 96
++VG I + E L+E F G V + R + + +GF+
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK 67
Query: 97 HYFDRRSAALA-ILTLNGRHLFGQPIKVNWAYASGQREDTSGHYN----IFVGDLSPEVT 151
H D R + ++ + + G+ +N + +SG YN IFVG L P +T
Sbjct: 68 HSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSG-----GDAYNKTKKIFVGGLPPTLT 122
Query: 152 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAI----NDLTGKWL 205
D F VY +D +M+DQ T R RGFGFVSF S+ S + +DL+GK +
Sbjct: 123 DEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 62.4 bits (150), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 139 YNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAIN 198
Y FVG L+ D L FS + D++++ D+++GRSRGFGFV+F+ ++ + AI
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 199 DLTGKWLGSRQIRCNWA-TKGAGG 221
++ GK L R I N A ++G+GG
Sbjct: 66 EMNGKELDGRVITVNEAQSRGSGG 89
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
IFVG LS +VT+ L + F Y ++ ++M + TGR RGFGF++F ++ A AI +
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 201 TGKWLGSRQIRCNWATKGAGGNEEKQ 226
G+ LG++ I N A GG + Q
Sbjct: 74 HGRELGNKVISVNKAEPKVGGEDVDQ 99
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
IFVG LS +VT+ L + F Y ++ ++M + TGR RGFGF++F ++ A AI +
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 201 TGKWLGSRQIRCNWATKGAGGNEEKQ 226
G+ LG++ I N A GG + Q
Sbjct: 74 HGRELGNKVISVNKAEPKVGGEDVDQ 99
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAIND 199
+F+G LS V + +L FS + ++ R+ +D+ +GRSRGFGFV F + DA SA +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 200 LTGKWLGSRQIRCNWATK 217
+ GK L R +R ++A +
Sbjct: 102 MDGKGLLGRPLRISFALE 119
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+++G LSP + +L FS + ++ARVM ++ TGRSRG+GFV+F S+ A SAI+ +
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92
Query: 201 TGKWLGSRQIRCNWA 215
G+ L I N A
Sbjct: 93 NGQELNGFNISVNVA 107
>AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=294
Length = 294
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAIND 199
++ V +LS + + L F + + + V DQKTG SRGFGFV+F S++DAQ AIN
Sbjct: 214 SVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 273
Query: 200 LTGKWLGSRQIRCNWAT 216
L G + +R WAT
Sbjct: 274 LNGYGYDNLILRVEWAT 290
>AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=321
Length = 321
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAIND 199
++ V +LS + + L F + + + V DQKTG SRGFGFV+F S++DAQ AIN
Sbjct: 241 SVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 300
Query: 200 LTGKWLGSRQIRCNWAT 216
L G + +R WAT
Sbjct: 301 LNGYGYDNLILRVEWAT 317
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%)
Query: 138 HYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAI 197
Y FVG L+ D L FS + D++++ D+++GRSRGFGFV+F+ ++ + AI
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 198 NDLTGKWLGSRQIRCNWA 215
++ GK L R I N A
Sbjct: 65 EEMNGKELDGRVITVNEA 82
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%)
Query: 138 HYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAI 197
Y FVG L+ D L FS + D++++ D+++GRSRGFGFV+F+ ++ + AI
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 198 NDLTGKWLGSRQIRCNWA 215
++ GK L R I N A
Sbjct: 65 EEMNGKELDGRVITVNEA 82
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%)
Query: 138 HYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAI 197
Y FVG L+ D L F+ Y D++++ D++TGRSRGFGFV+F+ ++ + AI
Sbjct: 7 EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAI 66
Query: 198 NDLTGKWLGSRQIRCNWA 215
+ G+ L R I N A
Sbjct: 67 EGMNGQDLDGRSITVNEA 84
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%)
Query: 138 HYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAI 197
Y FVG L+ D L F+ Y D++++ D++TGRSRGFGFV+F+ ++ + AI
Sbjct: 7 EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAI 66
Query: 198 NDLTGKWLGSRQIRCNWA 215
+ G+ L R I N A
Sbjct: 67 EGMNGQDLDGRSITVNEA 84
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 19/185 (10%)
Query: 139 YNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAIN 198
Y +FVG ++ E ++ L FS Y + +A V ++ TG+ RGFGFV F + D A+
Sbjct: 6 YKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALR 65
Query: 199 D---LTGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDG-KEISNSDAPE 254
D + GK + R K +E Q + +E G +E+S++
Sbjct: 66 DTHFILGKPVDVR--------KAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTS 117
Query: 255 NNPQYTTVYVGNLGSEATQLDLHRHFHALG----AGVIEEVRVQRDKGFGFVRYSTHAEA 310
+ ++VG L S T+ + +F G V+ + R +GFGFV Y +
Sbjct: 118 RTKK---IFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSV 174
Query: 311 ALAIQ 315
+ +Q
Sbjct: 175 EVVMQ 179
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 27/205 (13%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAI--- 197
+F+G +S E ++ L F + +A +M D+ TGR+RGFGFV F A+ +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 198 NDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISN-------- 249
+ + GK L I N + + VVE D + N
Sbjct: 68 HIIDGKIL-VDSIVYNQLCR------SDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQG 120
Query: 250 SDAPENNPQYTTVYVGNLGSEATQLDLHRHFHALG----AGVIEEVRVQRDKGFGFVRYS 305
S P N+ + ++VG L S T+ + ++F G V+ + R QR +GFGF+ Y
Sbjct: 121 SPGPSNSKK---IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYD 177
Query: 306 THAEAALAIQMGNTQSILCGKQIKC 330
+ E A+ + T L GK ++
Sbjct: 178 S--EEAVDKVLQKTFHELNGKMVEV 200
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 25/194 (12%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+F+G +S + + L FS + +A ++ D+ TGR+RGFGFV F A+ I +
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 201 TGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYT 260
+ R + A D +++V +N SS G +P +
Sbjct: 68 --HNIDGRLVEAKKAVP----------RDDQNMVNRSNSSSIQG-------SPGGPGRTR 108
Query: 261 TVYVGNLGSEATQLDLHRHFHALGAG----VIEEVRVQRDKGFGFVRYSTHAEAALAIQM 316
++VG L S T+ D +F G V+ + QR +GFGF+ Y + E A+ +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDS--EEAVEKVL 166
Query: 317 GNTQSILCGKQIKC 330
T L GK ++
Sbjct: 167 LKTFHELNGKMVEV 180
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 21/171 (12%)
Query: 56 VYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAIL-- 109
+++G I E L+E F+ G V + + + +GF+ + D A + I
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 110 -TLNGRHLFGQPI-------KVNWAYASGQREDTSG---HYNIFVGDLSPEVTDATLFAC 158
++GR + + VN + +S + G IFVG L VT++
Sbjct: 68 HNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTY 127
Query: 159 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAI----NDLTGKWL 205
F + + +D VM+D T R RGFGF+++ S++ + + ++L GK +
Sbjct: 128 FEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMV 178
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 16/190 (8%)
Query: 46 PGFDPS-TCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFD 100
P DP R+V+ + + TE + E F+ G V +L S G+I ++D
Sbjct: 159 PEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD 218
Query: 101 RRSAALAILTLNGRHLFGQPIKVNWAYAS---GQREDTS------GHYNIFVGDLSPEVT 151
S +AI L+G+ GQP+ V + A Q T+ ++VG+L ++
Sbjct: 219 VMSVPMAI-ALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMS 277
Query: 152 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKW-LGSRQI 210
+ L F + ++ D +TG+ +GFGF+ F + +++A L GK + R I
Sbjct: 278 ELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTI 337
Query: 211 RCNWATKGAG 220
+ + + G
Sbjct: 338 KVSSVSDHIG 347
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 25/194 (12%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+F+G +S + + L FS + +A ++ D+ TGR+RGFGFV F A+ I +
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 201 TGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYT 260
+ R + A D +++V +N SS G +P +
Sbjct: 68 --HNIDGRLVEAKKAVP----------RDDQNMVNRSNSSSIQG-------SPGGPGRTR 108
Query: 261 TVYVGNLGSEATQLDLHRHFHALGAG----VIEEVRVQRDKGFGFVRYSTHAEAALAIQM 316
++VG L S T+ D +F G V+ + QR +GFGF+ Y + E A+ +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDS--EEAVEKVL 166
Query: 317 GNTQSILCGKQIKC 330
T L GK ++
Sbjct: 167 LKTFHELNGKMVEV 180
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 21/171 (12%)
Query: 56 VYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAIL-- 109
+++G I E L+E F+ G V + + + +GF+ + D A + I
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 110 -TLNGRHLFGQPI-------KVNWAYASGQREDTSG---HYNIFVGDLSPEVTDATLFAC 158
++GR + + VN + +S + G IFVG L VT++
Sbjct: 68 HNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTY 127
Query: 159 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAI----NDLTGKWL 205
F + + +D VM+D T R RGFGF+++ S++ + + ++L GK +
Sbjct: 128 FEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMV 178
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 37/183 (20%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
IF+G L + T+ F Y +D+ +M D+ TG+ RGFGF++F I D
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 201 TGKWLGSRQIRCNWAT-KGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQY 259
+ +Q+ KGAGGN+ K D K+
Sbjct: 81 --HVINGKQVEIKRTIPKGAGGNQSK---DIKT--------------------------- 108
Query: 260 TTVYVGNLGSEATQLDLHRHFHALGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAIQ 315
++VG + S T+ +L F G VI + R +GFGFV + + +
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 316 MGN 318
GN
Sbjct: 169 KGN 171
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 17/164 (10%)
Query: 49 DPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSA 104
D ++ +++G +H T + + F G + + R + +GFI + D
Sbjct: 14 DGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVV 73
Query: 105 ALAIL---TLNGRHLFGQPIKVNWAYASG--QREDTSGHYNIFVGDLSPEVTDATLFACF 159
I +NG+ + IK +G Q +D IFVG + VT+ L F
Sbjct: 74 DKVIEDTHVINGKQV---EIKRTIPKGAGGNQSKDIKTK-KIFVGGIPSTVTEDELKDFF 129
Query: 160 SVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGK 203
+ Y + + +V+ D +T RSRGFGFV F D++ +++L K
Sbjct: 130 AKYGNVVEHQVIRDHETNRSRGFGFVIF----DSEEVVDELLSK 169
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 74/198 (37%), Gaps = 37/198 (18%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
IF+G L + T+ F Y +D+ +M D+ TG+ RGFGF++F I D
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 201 TGKWLGSRQIRCNWAT-KGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQY 259
+ +Q+ KGAGGN+ K K
Sbjct: 81 --HVINGKQVEIKRTIPKGAGGNQSKDIKTKK---------------------------- 110
Query: 260 TTVYVGNLGSEATQLDLHRHFHALGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAIQ 315
++VG + S T+ +L F G VI + R +GFGFV + + +
Sbjct: 111 --IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 316 MGNTQSILCGKQIKCSWG 333
GN + + WG
Sbjct: 169 KGNMIDMADTQVSLYKWG 186
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 17/164 (10%)
Query: 49 DPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSA 104
D ++ +++G +H T + + F G + + R + +GFI + D
Sbjct: 14 DGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVV 73
Query: 105 ALAIL---TLNGRHLFGQPIKVNWAYASG--QREDTSGHYNIFVGDLSPEVTDATLFACF 159
I +NG+ + IK +G Q +D IFVG + VT+ L F
Sbjct: 74 DKVIEDTHVINGKQV---EIKRTIPKGAGGNQSKDIKTK-KIFVGGIPSTVTEDELKDFF 129
Query: 160 SVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGK 203
+ Y + + +V+ D +T RSRGFGFV F D++ +++L K
Sbjct: 130 AKYGNVVEHQVIRDHETNRSRGFGFVIF----DSEEVVDELLSK 169
>AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 33/191 (17%)
Query: 53 CRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLN 112
C+S++VG I V++ L+E F+ G +E + R+ K++ FI Y++ AL ++N
Sbjct: 94 CKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTA--FIDYYEMDD-ALQAKSMN 150
Query: 113 GRHLFGQ-----------PIKVNWAYASGQREDTSGH-------YNIFVGDLSPEVTDAT 154
G+ + G P K WA + R H Y F GD+ P
Sbjct: 151 GKPMGGSFLRVDFLRSQAPKKEQWAGSYDNRNGNMNHKPQYPHSYEDFKGDVQPSKVLWI 210
Query: 155 LFACFSVYPSCSDARVMWDQ----------KTGRSRGFGFVSFRSQQDAQSAINDLTGKW 204
F + C+D +++ + K+ SR F V FRS ++A+ L G+
Sbjct: 211 GFPPTAT--QCNDEQILHNAMILFGEIERVKSYPSRNFALVEFRSAEEARQCKEGLQGRL 268
Query: 205 LGSRQIRCNWA 215
+ +I+ ++
Sbjct: 269 FNNPRIKIMYS 279
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 109/259 (42%), Gaps = 23/259 (8%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGR 114
+++VG++ + TE L E+F G ++ ++ + FI+Y A A L G
Sbjct: 19 NLWVGSLTPETTESDLTELFGRYGDIDRITVYSSR--GFAFIYYRHVEEAVAAKEALQGA 76
Query: 115 HLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQ 174
+L G IK+ +A + + +++VG + P V+ L FS + D R + ++
Sbjct: 77 NLNGSQIKIEYARPAKPCK------SLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRER 130
Query: 175 KTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVV 234
KT F+ + DA A + GK +G +R ++ A E+ S
Sbjct: 131 KT------AFIDYYEMDDALQA-KSMNGKPMGGSFLRVDFLRSQAPKKEQWAGS-----Y 178
Query: 235 ELTNGSSEDGKEISNS-DAPENNPQYTTVYVGNLGSEATQLDLHRHFH--ALGAGVIEEV 291
+ NG+ + +S + + + Q + V ATQ + + H + G IE V
Sbjct: 179 DNRNGNMNHKPQYPHSYEDFKGDVQPSKVLWIGFPPTATQCNDEQILHNAMILFGEIERV 238
Query: 292 RVQRDKGFGFVRYSTHAEA 310
+ + F V + + EA
Sbjct: 239 KSYPSRNFALVEFRSAEEA 257
>AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 33/191 (17%)
Query: 53 CRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLN 112
C+S++VG I V++ L+E F+ G +E + R+ K++ FI Y++ AL ++N
Sbjct: 94 CKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTA--FIDYYEMDD-ALQAKSMN 150
Query: 113 GRHLFGQ-----------PIKVNWAYASGQREDTSGH-------YNIFVGDLSPEVTDAT 154
G+ + G P K WA + R H Y F GD+ P
Sbjct: 151 GKPMGGSFLRVDFLRSQAPKKEQWAGSYDNRNGNMNHKPQYPHSYEDFKGDVQPSKVLWI 210
Query: 155 LFACFSVYPSCSDARVMWDQ----------KTGRSRGFGFVSFRSQQDAQSAINDLTGKW 204
F + C+D +++ + K+ SR F V FRS ++A+ L G+
Sbjct: 211 GFPPTAT--QCNDEQILHNAMILFGEIERVKSYPSRNFALVEFRSAEEARQCKEGLQGRL 268
Query: 205 LGSRQIRCNWA 215
+ +I+ ++
Sbjct: 269 FNNPRIKIMYS 279
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 109/259 (42%), Gaps = 23/259 (8%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGR 114
+++VG++ + TE L E+F G ++ ++ + FI+Y A A L G
Sbjct: 19 NLWVGSLTPETTESDLTELFGRYGDIDRITVYSSR--GFAFIYYRHVEEAVAAKEALQGA 76
Query: 115 HLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQ 174
+L G IK+ +A + + +++VG + P V+ L FS + D R + ++
Sbjct: 77 NLNGSQIKIEYARPAKPCK------SLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRER 130
Query: 175 KTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVV 234
KT F+ + DA A + GK +G +R ++ A E+ S
Sbjct: 131 KT------AFIDYYEMDDALQA-KSMNGKPMGGSFLRVDFLRSQAPKKEQWAGS-----Y 178
Query: 235 ELTNGSSEDGKEISNS-DAPENNPQYTTVYVGNLGSEATQLDLHRHFH--ALGAGVIEEV 291
+ NG+ + +S + + + Q + V ATQ + + H + G IE V
Sbjct: 179 DNRNGNMNHKPQYPHSYEDFKGDVQPSKVLWIGFPPTATQCNDEQILHNAMILFGEIERV 238
Query: 292 RVQRDKGFGFVRYSTHAEA 310
+ + F V + + EA
Sbjct: 239 KSYPSRNFALVEFRSAEEA 257
>AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 33/191 (17%)
Query: 53 CRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLN 112
C+S++VG I V++ L+E F+ G +E + R+ K++ FI Y++ AL ++N
Sbjct: 94 CKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTA--FIDYYEMDD-ALQAKSMN 150
Query: 113 GRHLFGQ-----------PIKVNWAYASGQREDTSGH-------YNIFVGDLSPEVTDAT 154
G+ + G P K WA + R H Y F GD+ P
Sbjct: 151 GKPMGGSFLRVDFLRSQAPKKEQWAGSYDNRNGNMNHKPQYPHSYEDFKGDVQPSKVLWI 210
Query: 155 LFACFSVYPSCSDARVMWDQ----------KTGRSRGFGFVSFRSQQDAQSAINDLTGKW 204
F + C+D +++ + K+ SR F V FRS ++A+ L G+
Sbjct: 211 GFPPTAT--QCNDEQILHNAMILFGEIERVKSYPSRNFALVEFRSAEEARQCKEGLQGRL 268
Query: 205 LGSRQIRCNWA 215
+ +I+ ++
Sbjct: 269 FNNPRIKIMYS 279
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 109/259 (42%), Gaps = 23/259 (8%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGR 114
+++VG++ + TE L E+F G ++ ++ + FI+Y A A L G
Sbjct: 19 NLWVGSLTPETTESDLTELFGRYGDIDRITVYSSR--GFAFIYYRHVEEAVAAKEALQGA 76
Query: 115 HLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQ 174
+L G IK+ +A + + +++VG + P V+ L FS + D R + ++
Sbjct: 77 NLNGSQIKIEYARPAKPCK------SLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRER 130
Query: 175 KTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVV 234
KT F+ + DA A + GK +G +R ++ A E+ S
Sbjct: 131 KT------AFIDYYEMDDALQA-KSMNGKPMGGSFLRVDFLRSQAPKKEQWAGS-----Y 178
Query: 235 ELTNGSSEDGKEISNS-DAPENNPQYTTVYVGNLGSEATQLDLHRHFH--ALGAGVIEEV 291
+ NG+ + +S + + + Q + V ATQ + + H + G IE V
Sbjct: 179 DNRNGNMNHKPQYPHSYEDFKGDVQPSKVLWIGFPPTATQCNDEQILHNAMILFGEIERV 238
Query: 292 RVQRDKGFGFVRYSTHAEA 310
+ + F V + + EA
Sbjct: 239 KSYPSRNFALVEFRSAEEA 257
>AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=858
Length = 858
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 33/191 (17%)
Query: 53 CRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLN 112
C+S++VG I V++ L+E F+ G +E + R+ K++ FI Y++ AL ++N
Sbjct: 94 CKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTA--FIDYYEMDD-ALQAKSMN 150
Query: 113 GRHLFGQ-----------PIKVNWAYASGQREDTSGH-------YNIFVGDLSPEVTDAT 154
G+ + G P K WA + R H Y F GD+ P
Sbjct: 151 GKPMGGSFLRVDFLRSQAPKKEQWAGSYDNRNGNMNHKPQYPHSYEDFKGDVQPSKVLWI 210
Query: 155 LFACFSVYPSCSDARVMWDQ----------KTGRSRGFGFVSFRSQQDAQSAINDLTGKW 204
F + C+D +++ + K+ SR F V FRS ++A+ L G+
Sbjct: 211 GFPPTAT--QCNDEQILHNAMILFGEIERVKSYPSRNFALVEFRSAEEARQCKEGLQGRL 268
Query: 205 LGSRQIRCNWA 215
+ +I+ ++
Sbjct: 269 FNNPRIKIMYS 279
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 109/259 (42%), Gaps = 23/259 (8%)
Query: 55 SVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGR 114
+++VG++ + TE L E+F G ++ ++ + FI+Y A A L G
Sbjct: 19 NLWVGSLTPETTESDLTELFGRYGDIDRITVYSSR--GFAFIYYRHVEEAVAAKEALQGA 76
Query: 115 HLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQ 174
+L G IK+ +A + + +++VG + P V+ L FS + D R + ++
Sbjct: 77 NLNGSQIKIEYARPAKPCK------SLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRER 130
Query: 175 KTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVV 234
KT F+ + DA A + GK +G +R ++ A E+ S
Sbjct: 131 KT------AFIDYYEMDDALQA-KSMNGKPMGGSFLRVDFLRSQAPKKEQWAGS-----Y 178
Query: 235 ELTNGSSEDGKEISNS-DAPENNPQYTTVYVGNLGSEATQLDLHRHFH--ALGAGVIEEV 291
+ NG+ + +S + + + Q + V ATQ + + H + G IE V
Sbjct: 179 DNRNGNMNHKPQYPHSYEDFKGDVQPSKVLWIGFPPTATQCNDEQILHNAMILFGEIERV 238
Query: 292 RVQRDKGFGFVRYSTHAEA 310
+ + F V + + EA
Sbjct: 239 KSYPSRNFALVEFRSAEEA 257
>AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9392397-9393545 REVERSE LENGTH=382
Length = 382
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 123 VNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGF 182
++ + S R+ S NIFV L + T L A F VY ++ V+ D+ TGR++GF
Sbjct: 149 ISAVFESADRD--SSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGF 206
Query: 183 GFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSV 233
GFV F++++ A++A+ + K + +R + C A G +Q +SV
Sbjct: 207 GFVLFKTRKGARAALKN-PEKRMYNRTVSCLPARPFNSGKPREQQQPVESV 256
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
IFVG L P + + L F VY + ++M+D TGRSRGFGFV+F+++ +D
Sbjct: 159 IFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDG 218
Query: 201 TGKWLGSRQIRCNWA 215
LG +Q+ A
Sbjct: 219 KVHELGDKQVEIKRA 233
>AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translation
initiation factor 3G2 | chr5:1808169-1809742 FORWARD
LENGTH=308
Length = 308
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAIND 199
++ V +LS + L F + + + V DQKT SRGFGFVSF S++DAQ AIN
Sbjct: 207 SVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINK 266
Query: 200 LTGKWLGSRQIRCNWAT 216
L G + +R W+T
Sbjct: 267 LNGYGYDNLILRVEWST 283
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 28/186 (15%)
Query: 138 HYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAI 197
H IFV L + TL F Y D + ++D+ +G+S+G+GF+ ++S+ A++A+
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 198 NDLTGKWLGSRQIRCNWATKGA--GGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPEN 255
K +GSR C A+KG GG + + + SNS+ +
Sbjct: 199 KQPQ-KKIGSRMTACQLASKGPVFGGAPIAAAAVSAPA------------QHSNSEHTQK 245
Query: 256 NPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRV------QRDKGFGFVRYSTHAE 309
+YV N+G+E L F G IEE + R KGF Y +
Sbjct: 246 K-----IYVSNVGAELDPQKLLMFFSKFGE--IEEGPLGLDKYTGRPKGFCLFVYKSSES 298
Query: 310 AALAIQ 315
A A++
Sbjct: 299 AKRALE 304
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 28/186 (15%)
Query: 138 HYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAI 197
H IFV L + TL F Y D + ++D+ +G+S+G+GF+ ++S+ A++A+
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 198 NDLTGKWLGSRQIRCNWATKGA--GGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPEN 255
K +GSR C A+KG GG + + + SNS+ +
Sbjct: 199 KQPQ-KKIGSRMTACQLASKGPVFGGAPIAAAAVSAPA------------QHSNSEHTQK 245
Query: 256 NPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRV------QRDKGFGFVRYSTHAE 309
+YV N+G+E L F G IEE + R KGF Y +
Sbjct: 246 K-----IYVSNVGAELDPQKLLMFFSKFGE--IEEGPLGLDKYTGRPKGFCLFVYKSSES 298
Query: 310 AALAIQ 315
A A++
Sbjct: 299 AKRALE 304
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 28/186 (15%)
Query: 138 HYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAI 197
H IFV L + TL F Y D + ++D+ +G+S+G+GF+ ++S+ A++A+
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 198 NDLTGKWLGSRQIRCNWATKGA--GGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPEN 255
K +GSR C A+KG GG + + + SNS+ +
Sbjct: 199 KQPQ-KKIGSRMTACQLASKGPVFGGAPIAAAAVSAPA------------QHSNSEHTQK 245
Query: 256 NPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRV------QRDKGFGFVRYSTHAE 309
+YV N+G+E L F G IEE + R KGF Y +
Sbjct: 246 K-----IYVSNVGAELDPQKLLMFFSKFGE--IEEGPLGLDKYTGRPKGFCLFVYKSSES 298
Query: 310 AALAIQ 315
A A++
Sbjct: 299 AKRALE 304
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 28/186 (15%)
Query: 138 HYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAI 197
H IFV L + TL F Y D + ++D+ +G+S+G+GF+ ++S+ A++A+
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 198 NDLTGKWLGSRQIRCNWATKGA--GGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPEN 255
K +GSR C A+KG GG + + + SNS+ +
Sbjct: 199 KQPQ-KKIGSRMTACQLASKGPVFGGAPIAAAAVSAPA------------QHSNSEHTQK 245
Query: 256 NPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRV------QRDKGFGFVRYSTHAE 309
+YV N+G+E L F G IEE + R KGF Y +
Sbjct: 246 K-----IYVSNVGAELDPQKLLMFFSKFGE--IEEGPLGLDKYTGRPKGFCLFVYKSSES 298
Query: 310 AALAIQ 315
A A++
Sbjct: 299 AKRALE 304
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 28/186 (15%)
Query: 138 HYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAI 197
H IFV L + TL F Y D + ++D+ +G+S+G+GF+ ++S+ A++A+
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 198 NDLTGKWLGSRQIRCNWATKGA--GGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPEN 255
K +GSR C A+KG GG + + + SNS+ +
Sbjct: 199 KQPQ-KKIGSRMTACQLASKGPVFGGAPIAAAAVSAPA------------QHSNSEHTQK 245
Query: 256 NPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRV------QRDKGFGFVRYSTHAE 309
+YV N+G+E L F G IEE + R KGF Y +
Sbjct: 246 K-----IYVSNVGAELDPQKLLMFFSKFGE--IEEGPLGLDKYTGRPKGFCLFVYKSSES 298
Query: 310 AALAIQ 315
A A++
Sbjct: 299 AKRALE 304
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 99/218 (45%), Gaps = 22/218 (10%)
Query: 54 RSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS---YGFIHYFDRRSAALAILT 110
R ++V N+ ++ + E+F G V ++ R++ + F+ A AI
Sbjct: 95 RKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDK 154
Query: 111 LNGRHLFGQPIKVNWAYASGQREDTSGH-----------YNIFVGDLSPEVTDATLFACF 159
+ + G+ I V++A + S + + ++V +L+ + L F
Sbjct: 155 FDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELF 214
Query: 160 SVYP-SCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKG 218
+ + ARV++ GRS G+GFVSF ++++A++AI L GK + R I ++ +
Sbjct: 215 TAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLRS 274
Query: 219 AGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENN 256
A +E+ + + N +SEDG + + + E N
Sbjct: 275 ASESEDGDSVE-------ANNASEDGDTVEDKNTSEEN 305
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+FV LS TD +L FS + +AR++ D +T R +GFGF++F S+ DA+ A+ L
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 201 TGKWLGSRQI 210
GK + R I
Sbjct: 69 DGKIVDGRLI 78
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 7/162 (4%)
Query: 49 DPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSSYG----FIHYFDRRSA 104
D S+ ++VG++ TE ++ F G V L + +++ F+ Y + A
Sbjct: 40 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 99
Query: 105 ALAILTL-NGRHLFGQPIKVNWAYASGQREDT-SGHYNIFVGDLSPEVTDATLFACFSVY 162
AI L N L G V YA G+RE + + +FVG L+ + T+ + F +
Sbjct: 100 DRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQF 159
Query: 163 PSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKW 204
D +M D+ +SRG GFV + S++ A +AI+ L G +
Sbjct: 160 GHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGTY 200
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 7/162 (4%)
Query: 49 DPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSSYG----FIHYFDRRSA 104
D S+ ++VG++ TE ++ F G V L + +++ F+ Y + A
Sbjct: 115 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 174
Query: 105 ALAILTL-NGRHLFGQPIKVNWAYASGQREDT-SGHYNIFVGDLSPEVTDATLFACFSVY 162
AI L N L G V YA G+RE + + +FVG L+ + T+ + F +
Sbjct: 175 DRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQF 234
Query: 163 PSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKW 204
D +M D+ +SRG GFV + S++ A +AI+ L G +
Sbjct: 235 GHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGTY 275
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAIND 199
N+F+ ++ E D L A F + A+V D+ TG S+ FGFVS+ SQ AQ+AI+
Sbjct: 350 NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDM 409
Query: 200 LTGKWLGSRQIRC 212
+ G+ LG ++++
Sbjct: 410 MNGRHLGGKKLKV 422
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 7/162 (4%)
Query: 49 DPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSSYG----FIHYFDRRSA 104
D S+ ++VG++ TE ++ F G V L + +++ F+ Y + A
Sbjct: 115 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 174
Query: 105 ALAILTL-NGRHLFGQPIKVNWAYASGQREDT-SGHYNIFVGDLSPEVTDATLFACFSVY 162
AI L N L G V YA G+RE + + +FVG L+ + T+ + F +
Sbjct: 175 DRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQF 234
Query: 163 PSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKW 204
D +M D+ +SRG GFV + S++ A +AI+ L G +
Sbjct: 235 GHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGTY 275
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 88/208 (42%), Gaps = 44/208 (21%)
Query: 129 SGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 188
SG D++G IFVG L+ E T A F Y +D+ +M D+KTG+ RGFGFV++
Sbjct: 34 SGGGVDSAG--KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTY- 90
Query: 189 SQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEIS 248
A S++ D + I+ N G KQ VE+ + I
Sbjct: 91 ----ADSSVVD--------KVIQDNHIIIG------KQ-------VEIK-------RTIP 118
Query: 249 NSDAPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRD------KGFGFV 302
N+ + ++VG + S + F G ++E ++ RD +GFGFV
Sbjct: 119 RGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGE--LKEHQIMRDHSTGRSRGFGFV 176
Query: 303 RYSTHAEAALAIQMGNTQSILCGKQIKC 330
Y + + GN L G Q++
Sbjct: 177 TYESEDMVDHLLAKGNRIE-LSGTQVEI 203
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 16/168 (9%)
Query: 37 EPIPSGNLPPGFDPSTCRS---------VYVGNIHTQVTELLLQEVFAGTGPVEGCKLFR 87
+P PS ++ D S S ++VG + + T + F G + + +
Sbjct: 16 DPKPSEDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMK 75
Query: 88 KEKSS----YGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTS-GHYNIF 142
K+ +GF+ Y D S+ + + + + G+ +++ G IF
Sbjct: 76 DRKTGQPRGFGFVTYAD--SSVVDKVIQDNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIF 133
Query: 143 VGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQ 190
VG + V D F + + ++M D TGRSRGFGFV++ S+
Sbjct: 134 VGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESE 181
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 37/206 (17%)
Query: 43 NLPPGFDPS-TCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLF--------------- 86
+ P DP R+V+ I + TE + E F+ G V C
Sbjct: 199 KVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKV--CPFLCRFHVRDVRIIMDRI 256
Query: 87 RKEKSSYGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTS---------- 136
+ G++ ++D S +AI L+G+ L GQP+ V + A ++
Sbjct: 257 SRRSRGIGYVEFYDTMSVPMAI-ALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGML 315
Query: 137 -----GHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQ 191
G ++VG+L +++ L F + S +V D+ TG +GFGFV F +
Sbjct: 316 GPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLE 374
Query: 192 DAQSAINDLTGKW-LGSRQIRCNWAT 216
DA++A+N L G+ + R I+ + T
Sbjct: 375 DARNALN-LNGQLEIAGRAIKVSAVT 399
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 26/170 (15%)
Query: 167 DARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQ 226
D R++ D+ + RSRG G+V F AI L+G+ L + + K
Sbjct: 248 DVRIIMDRISRRSRGIGYVEFYDTMSVPMAIA-LSGQPLLGQPVMV------------KP 294
Query: 227 NSDTKSVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAG 286
+ K++V+ T ++ G + +YVGNL ++ DL + F + G+
Sbjct: 295 SEAEKNLVQSTTAAAGAGGMLGPYSGGARR-----LYVGNLHINMSEDDLRKVFESFGS- 348
Query: 287 VIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTQSILCGKQIKCS 331
+E V+V RD KGFGFV+++ +A A+ + N Q + G+ IK S
Sbjct: 349 -VELVQVPRDETGLCKGFGFVQFARLEDARNALNL-NGQLEIAGRAIKVS 396
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+FVG L+ E TL F Y +A V+ D+ TGRS+G+GFV+FR + A+ A D
Sbjct: 26 VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADP 85
Query: 201 TGKWLGSRQIRCNWATKG 218
T + R+ CN A+ G
Sbjct: 86 T-PIIDGRRANCNLASLG 102
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 30/178 (16%)
Query: 52 TCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALA 107
+C+ +++G I + +E L++ F G V + + + +GF+ + D A
Sbjct: 5 SCK-LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 108 ILTLNGRHLFGQPIKVNWAYASGQRED----------------TSGHYNIFVGDLSPEVT 151
+L +H+ K+ A + R+D S IFVG L+ VT
Sbjct: 64 VLL---KHIIDG--KIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVT 118
Query: 152 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDA----QSAINDLTGKWL 205
+A F+ + +D VM+D +T R RGFGF+S+ S++ Q ++L GK +
Sbjct: 119 EAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMV 176
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 30/178 (16%)
Query: 52 TCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALA 107
+C+ +++G I + +E L++ F G V + + + +GF+ + D A
Sbjct: 5 SCK-LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 108 ILTLNGRHLFGQPIKVNWAYASGQRED----------------TSGHYNIFVGDLSPEVT 151
+L +H+ K+ A + R+D S IFVG L+ VT
Sbjct: 64 VLL---KHIIDG--KIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVT 118
Query: 152 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDA----QSAINDLTGKWL 205
+A F+ + +D VM+D +T R RGFGF+S+ S++ Q ++L GK +
Sbjct: 119 EAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMV 176
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 20/194 (10%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+F+G +S + + L F Y +A +M D+ TGR+RGFGF+ F A+ I D
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 76
Query: 201 TGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYT 260
+ R + A K+++ ++ ++G + G
Sbjct: 77 --HIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGART------------K 122
Query: 261 TVYVGNLGSEATQLDLHRHFHALG----AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQM 316
++VG L S T+ + +F G V+ + QR +GFGF+ + + E ++ + +
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS--EESVDMVL 180
Query: 317 GNTQSILCGKQIKC 330
T L GK ++
Sbjct: 181 HKTFHELNGKMVEV 194
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 32/184 (17%)
Query: 51 STCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAAL 106
S +++G I E LQE F G + + R + +GFI + D A
Sbjct: 12 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 71
Query: 107 AILTLNGRHLF-GQPIKVNWAYASGQREDTSGHYN--------------------IFVGD 145
I+ +H+ G+ ++ A ++ H + IFVG
Sbjct: 72 VIMD---KHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGG 128
Query: 146 LSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAI----NDLT 201
L +T+A F + + +D VM+D T R RGFGF++F S++ + ++L
Sbjct: 129 LPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELN 188
Query: 202 GKWL 205
GK +
Sbjct: 189 GKMV 192
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 128 ASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 187
+S Q E +G N+F+ ++ E D L A F + A+V D+ TG S+ FGF+S+
Sbjct: 320 SSLQTEGPAGA-NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISY 378
Query: 188 RSQQDAQSAINDLTGKWLGSRQIRC 212
SQ AQ+AIN + G L ++++
Sbjct: 379 DSQAAAQNAINTMNGCQLSGKKLKV 403
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 20/194 (10%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+F+G +S + + L F Y +A +M D+ TGR+RGFGF+ F A+ I D
Sbjct: 14 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 73
Query: 201 TGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYT 260
+ R + A K+++ ++ ++G + G
Sbjct: 74 --HIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGART------------K 119
Query: 261 TVYVGNLGSEATQLDLHRHFHALG----AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQM 316
++VG L S T+ + +F G V+ + QR +GFGF+ + + E ++ + +
Sbjct: 120 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS--EESVDMVL 177
Query: 317 GNTQSILCGKQIKC 330
T L GK ++
Sbjct: 178 HKTFHELNGKMVEV 191
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 32/184 (17%)
Query: 51 STCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAAL 106
S +++G I E LQE F G + + R + +GFI + D A
Sbjct: 9 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 68
Query: 107 AILTLNGRHLF-GQPIKVNWAYASGQREDTSGHYN--------------------IFVGD 145
I+ +H+ G+ ++ A ++ H + IFVG
Sbjct: 69 VIMD---KHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGG 125
Query: 146 LSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAI----NDLT 201
L +T+A F + + +D VM+D T R RGFGF++F S++ + ++L
Sbjct: 126 LPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELN 185
Query: 202 GKWL 205
GK +
Sbjct: 186 GKMV 189
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 128 ASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 187
+S Q E +G N+F+ ++ E D L A F + A+V D+ TG S+ FGF+S+
Sbjct: 329 SSLQTEGPAGA-NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISY 387
Query: 188 RSQQDAQSAINDLTGKWLGSRQIR 211
SQ AQ+AIN + G L ++++
Sbjct: 388 DSQAAAQNAINTMNGCQLSGKKLK 411
>AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179
FORWARD LENGTH=177
Length = 177
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
++VG L+ EV ++ L A F + D + DQ + R FGFV+F ++DA +A++++
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 201 TGKWLGSRQIRCNWA 215
G L R + N+A
Sbjct: 75 DGAELYGRVLTVNYA 89
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAIND 199
+FVG L+ E TL F Y +A V+ D+ TGRS+G+GFV+FR + A+ A D
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 200 LTGKWLGSRQIRCNWATKG 218
T + R+ CN A+ G
Sbjct: 85 PT-PIIDGRRANCNLASLG 102
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAIND 199
+FVG L+ E TL F Y +A V+ D+ TGRS+G+GFV+FR + A+ A D
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 200 LTGKWLGSRQIRCNWATKG 218
T + R+ CN A+ G
Sbjct: 85 PT-PIIDGRRANCNLASLG 102
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 26/196 (13%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+F ++ T+ ++ FS D R++ D+ + RSRG G+V F AI L
Sbjct: 233 VFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIA-L 291
Query: 201 TGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYT 260
+G+ L + + K + K++V+ T ++ G +
Sbjct: 292 SGQPLLGQPVMV------------KPSEAEKNLVQSTTAAAGAGGMLGPYSGGARR---- 335
Query: 261 TVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQ 315
+YVGNL ++ DL + F + G+ +E V+V RD KGFGFV+++ +A A+
Sbjct: 336 -LYVGNLHINMSEDDLRKVFESFGS--VELVQVPRDETGLCKGFGFVQFARLEDARNALN 392
Query: 316 MGNTQSILCGKQIKCS 331
+ N Q + G+ IK S
Sbjct: 393 L-NGQLEIAGRAIKVS 407
>AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6744029-6746133 FORWARD LENGTH=337
Length = 337
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
++VG L ++T+ + FS+Y S +++ D+ R + +GFV+F +++ A AI D+
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSADDAIEDM 67
Query: 201 TGKWLGSRQIRCNWATKGAG 220
GK +G R +R N T G
Sbjct: 68 DGKSIGGRAVRVNDVTTRGG 87
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 26/196 (13%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+F ++ T+ ++ FS D R++ D+ + RSRG G+V F AI L
Sbjct: 184 VFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIA-L 242
Query: 201 TGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYT 260
+G+ L + + K + K++V+ T ++ G +
Sbjct: 243 SGQPLLGQPVMV------------KPSEAEKNLVQSTTAAAGAGGMLGPYSGGARR---- 286
Query: 261 TVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQ 315
+YVGNL ++ DL + F + G+ +E V+V RD KGFGFV+++ +A A+
Sbjct: 287 -LYVGNLHINMSEDDLRKVFESFGS--VELVQVPRDETGLCKGFGFVQFARLEDARNALN 343
Query: 316 MGNTQSILCGKQIKCS 331
+ N Q + G+ IK S
Sbjct: 344 L-NGQLEIAGRAIKVS 358
>AT5G25060.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:8634219-8639984 REVERSE LENGTH=946
Length = 946
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMW---DQKTGRSRGFGFVSFRSQQDAQSA 196
N++VG+LSP+V + L F + + ++MW D++ R R GFVSF ++ D Q+A
Sbjct: 180 NLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQAA 239
Query: 197 INDLTGKWLGSRQIRCNW 214
+++ G + +++ W
Sbjct: 240 KDEMQGIIVYEYELKIGW 257
>AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9388571-9390450 REVERSE LENGTH=343
Length = 343
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 10/152 (6%)
Query: 138 HYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAI 197
H IFV L E T TL F Y + V+ D+ TG+++GFGFV F++++ A+ A+
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
Query: 198 NDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNP 257
+ + L +R C A+ G + + D V+++ GS ++N P+
Sbjct: 163 KEPKKRIL-NRTATCQLASMGPAAS--GKGHDQPGPVKISMGS------MANHGQPQQQQ 213
Query: 258 QYTTVYVGNLGSEATQLDLHRHFHAL-GAGVI 288
G A+ L +H L GAG++
Sbjct: 214 VQGQHVFNGGGMAASPFMLGNQYHPLYGAGML 245
>AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9389407-9390450 REVERSE LENGTH=347
Length = 347
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 10/152 (6%)
Query: 138 HYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAI 197
H IFV L E T TL F Y + V+ D+ TG+++GFGFV F++++ A+ A+
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
Query: 198 NDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNP 257
+ + L +R C A+ G + + D V+++ GS ++N P+
Sbjct: 163 KEPKKRIL-NRTATCQLASMGPAAS--GKGHDQPGPVKISMGS------MANHGQPQQQQ 213
Query: 258 QYTTVYVGNLGSEATQLDLHRHFHAL-GAGVI 288
G A+ L +H L GAG++
Sbjct: 214 VQGQHVFNGGGMAASPFMLGNQYHPLYGAGML 245
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%)
Query: 115 HLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQ 174
++F QP + + A Q + IFVG LSP L F + DA V+ D+
Sbjct: 12 NIFRQPRALQASNAMLQGNLSLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDR 71
Query: 175 KTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQI 210
++G SRGFGFV++ S + A +A+ + K L R I
Sbjct: 72 ESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRII 107
>AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107659 FORWARD LENGTH=249
Length = 249
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+FVG L+ E T+ F + +A V+ D+ +GRS+G+GFV+FR + A+SA D
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 201 TGKWLGSRQIRCNWATKG 218
T + R+ CN A+ G
Sbjct: 75 T-PVIDGRRANCNLASLG 91
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 107 AILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCS 166
A+ + GRHL + +N + + + +F+G LS T+ L FS
Sbjct: 3 ALARIGGRHLKSVCL-INSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVV 61
Query: 167 DARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWA 215
+A+++ D+ + RS+GFGFV+F S +AQ A+ + G+ L R I ++A
Sbjct: 62 EAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYA 110
>AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107618 FORWARD LENGTH=242
Length = 242
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+FVG L+ E T+ F + +A V+ D+ +GRS+G+GFV+FR + A+SA D
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 201 TGKWLGSRQIRCNWATKG 218
T + R+ CN A+ G
Sbjct: 75 T-PVIDGRRANCNLASLG 91
>AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 134 DTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDA 193
D S Y++ V +++ T L+ F+ Y D + D++TG SRGF FV ++ + +A
Sbjct: 11 DISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEA 70
Query: 194 QSAINDLTGKWLGSRQIRCNWATKGAGGNEEK 225
A+ L G+ + R+I +A G N EK
Sbjct: 71 HKAVERLDGRVVDGREITVQFAK--YGPNAEK 100
>AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 134 DTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDA 193
D S Y++ V +++ T L+ F+ Y D + D++TG SRGF FV ++ + +A
Sbjct: 11 DISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEA 70
Query: 194 QSAINDLTGKWLGSRQIRCNWATKGAGGNEEK 225
A+ L G+ + R+I +A G N EK
Sbjct: 71 HKAVERLDGRVVDGREITVQFAK--YGPNAEK 100
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDA----QSA 196
IFVG L+ VT+A F+ + +D VM+D +T R RGFGF+S+ S++ Q
Sbjct: 48 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 107
Query: 197 INDLTGKWL 205
++L GK +
Sbjct: 108 FHELNGKMV 116
>AT5G59860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24113462-24114449 FORWARD LENGTH=157
Length = 157
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 146 LSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWL 205
LS TD +L F+ + AR++ DQ+T R +GFGF++F S+ DAQ A+ L GK +
Sbjct: 78 LSAYTTDQSLRQLFAPF-----ARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIV 132
Query: 206 GSRQI 210
R I
Sbjct: 133 NGRLI 137
>AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107949 FORWARD LENGTH=347
Length = 347
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+FVG L+ E T+ F + +A V+ D+ +GRS+G+GFV+FR + A+SA D
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 201 TGKWLGSRQIRCNWATKG 218
T + R+ CN A+ G
Sbjct: 75 T-PVIDGRRANCNLASLG 91
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 51.2 bits (121), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 139 YNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAIN 198
Y FVG L+ D L FS + D++++ D+++GRSRGFGFV+F+ ++ + AI
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 199 DL 200
++
Sbjct: 66 EM 67
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 74/187 (39%), Gaps = 27/187 (14%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
++V ++ A L F + + V + +TG SRG G+V+ S A+ AI L
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 201 TGKWLGSRQIRCNWATK---GAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNP 257
G +G R++R ++ G N E NS K ++ +
Sbjct: 170 DGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHK---------------- 213
Query: 258 QYTTVYVGNLGSEATQLDLHRHFHALG----AGVIEEVRVQRDKGFGFVRYSTHAEAALA 313
VYVGNL L HF G V+ + + R++ F F+ +++ E A
Sbjct: 214 ----VYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAA 269
Query: 314 IQMGNTQ 320
+ TQ
Sbjct: 270 LSFNGTQ 276
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 20/184 (10%)
Query: 46 PGFDPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRK----EKSSYGFIHYFDR 101
P P C +YV NI L ++F G V ++ R E G++
Sbjct: 101 PVKKPRPC-ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSI 159
Query: 102 RSAALAILTLNGRHLFGQPIKVNWA--YASGQREDTS-------------GHYNIFVGDL 146
SA +AI +L+G + G+ ++V ++ G R + + ++VG+L
Sbjct: 160 NSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNL 219
Query: 147 SPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLG 206
L FS + + RV+ D+KTGR+R F F+SF S ++ +A++ ++ G
Sbjct: 220 PWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEG 279
Query: 207 SRQI 210
R I
Sbjct: 280 RRII 283
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
IFVG L+ E T+ F + +A V+ D+ TGRS+G+GFV+F+ + A A ++
Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNM 83
Query: 201 TGKWLGSRQIRCNWATKGA 219
+ R+ CN A GA
Sbjct: 84 N-PVIDGRRANCNLACLGA 101
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAIND 199
N+FV LS T L F+ + +DA+V+ D+ +G S+GFGFV + + +D+ I
Sbjct: 57 NLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAG 116
Query: 200 LTGKWLGSRQIRCNWA 215
+ GK+L I +A
Sbjct: 117 MDGKFLDGWVIFAEYA 132
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+FV LS T+ L F+ + DARV+ D+ +GRS+GFGFV++ + +DA+ A ++
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 201 TGKWL 205
K+L
Sbjct: 96 NAKFL 100
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=613
Length = 613
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAIND 199
NIFV + T L F Y + V+ D+ TGR +G+GFV F++++ A+ A+
Sbjct: 409 NIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALK- 467
Query: 200 LTGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSE 242
K + +R + CN A++ G ++Q+ ++LT +++
Sbjct: 468 RPEKRMYNRIVVCNLASEKPGKAGKEQDMAEPVNIDLTKMANQ 510
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 141 IFVGDLSPEVTDATLFA-CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAIND 199
+FVG++ + T+ L C V P S R++ D++TG+ +G+GF ++ ++ A SA +
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVS-FRLVTDRETGKPKGYGFCEYKDEETALSARRN 69
Query: 200 LTGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEI 247
L + RQ+R ++A G ++ + S + T +E K+I
Sbjct: 70 LQSYEINGRQLRVDFAENDKGTDKTRDQSQGGPGLPSTTTVTESQKQI 117
>AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6357503-6359081 REVERSE LENGTH=172
Length = 172
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 142 FVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLT 201
FV S V++ L FS + ++ +++ +++T +S G+G+V F S++DAQSA+ +
Sbjct: 80 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139
Query: 202 GKWLGSRQIRCNWATKG 218
GK+ R I + G
Sbjct: 140 GKFFDGRFILVKFGQPG 156
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%)
Query: 139 YNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAIN 198
Y F+G L+ +D L F Y +A+V+ D+ +GRSRGFGF++F ++ AI
Sbjct: 7 YRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIA 66
Query: 199 DLTGKWLGSRQIRCNWATKGAGGNEEKQNSD 229
+ G L R I + A GG + D
Sbjct: 67 AMNGMDLDGRTITVDKAQPHQGGAGRDNDGD 97
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 23/194 (11%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+F+G +S + + L FS Y +A +M D+ TGR+RGFGF+ F ++ I D
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 201 TGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYT 260
+ R + A K+++ ++ +G K+I
Sbjct: 68 --HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKI------------- 112
Query: 261 TVYVGNLGSEATQLDLHRHFHALG----AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQM 316
+VG L S T+ + +F G V+ + QR +GFGF+ + + + A+ +
Sbjct: 113 --FVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS--DDAVDRVL 168
Query: 317 GNTQSILCGKQIKC 330
T L GK ++
Sbjct: 169 HKTFHELNGKLVEV 182
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 23/194 (11%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+F+G +S + + L FS Y +A +M D+ TGR+RGFGF+ F ++ I D
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 201 TGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYT 260
+ R + A K+++ ++ +G K+I
Sbjct: 68 --HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKI------------- 112
Query: 261 TVYVGNLGSEATQLDLHRHFHALG----AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQM 316
+VG L S T+ + +F G V+ + QR +GFGF+ + + + A+ +
Sbjct: 113 --FVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS--DDAVDRVL 168
Query: 317 GNTQSILCGKQIKC 330
T L GK ++
Sbjct: 169 HKTFHELNGKLVEV 182
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 23/194 (11%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+F+G +S + + L FS Y +A +M D+ TGR+RGFGF+ F ++ I D
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 201 TGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYT 260
+ R + A K+++ ++ +G K+I
Sbjct: 68 --HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKI------------- 112
Query: 261 TVYVGNLGSEATQLDLHRHFHALG----AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQM 316
+VG L S T+ + +F G V+ + QR +GFGF+ + + + A+ +
Sbjct: 113 --FVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS--DDAVDRVL 168
Query: 317 GNTQSILCGKQIKC 330
T L GK ++
Sbjct: 169 HKTFHELNGKLVEV 182
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 23/194 (11%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
+F+G +S + + L FS Y +A +M D+ TGR+RGFGF+ F ++ I D
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 201 TGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYT 260
+ R + A K+++ ++ +G K+I
Sbjct: 68 --HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKI------------- 112
Query: 261 TVYVGNLGSEATQLDLHRHFHALG----AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQM 316
+VG L S T+ + +F G V+ + QR +GFGF+ + + + A+ +
Sbjct: 113 --FVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS--DDAVDRVL 168
Query: 317 GNTQSILCGKQIKC 330
T L GK ++
Sbjct: 169 HKTFHELNGKLVEV 182
>AT1G07360.1 | Symbols: | CCCH-type zinc fingerfamily protein with
RNA-binding domain | chr1:2260562-2262795 REVERSE
LENGTH=481
Length = 481
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 246 EISNSDAPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYS 305
E+ ++P++ T+YVG L S + D+ F+A G IE +R+ DK FV Y+
Sbjct: 215 EMGTLESPDDE-SIKTLYVGGLNSRILEQDIRDQFYAHGE--IESIRILADKACAFVTYT 271
Query: 306 THAEAALAIQMGNTQSILCGKQIKCSWG 333
+ A A Q + + ++ G+++K +WG
Sbjct: 272 SREGAEKAAQELSNRLVINGQRLKLTWG 299
>AT2G29580.1 | Symbols: | CCCH-type zinc fingerfamily protein with
RNA-binding domain | chr2:12652011-12654158 FORWARD
LENGTH=483
Length = 483
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 246 EISNSDAPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYS 305
E+ ++PE+ T+YVG L S + D+ F+A G IE +R+ +K FV Y+
Sbjct: 215 EMGTLESPEDQ-SIRTLYVGGLNSRVLEQDIRDQFYAHGE--IESIRILAEKACAFVTYT 271
Query: 306 THAEAALAIQMGNTQSILCGKQIKCSWG 333
T A A + + + ++ G+++K +WG
Sbjct: 272 TREGAEKAAEELSNRLVVNGQRLKLTWG 299
>AT5G07290.1 | Symbols: AML4, ML4 | MEI2-like 4 |
chr5:2294248-2298491 FORWARD LENGTH=907
Length = 907
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 6/160 (3%)
Query: 53 CRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLN 112
R ++V N+ + + + L +F G V K + + + Y+D R+A A L+
Sbjct: 210 SRILFVRNVDSSIEDCELGVLFKQFGDVRALHTAGKNRG-FIMVSYYDIRAAQKAARALH 268
Query: 113 GRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMW 172
GR L G+ + + ++ ++ S ++V +L +++ L FS Y + R
Sbjct: 269 GRLLRGRKLDIRYSIPKENPKENSSEGALWVNNLDSSISNEELHGIFSSYGEIREVR--- 325
Query: 173 DQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRC 212
+T ++ F + A+ A+ L G + RQ++
Sbjct: 326 --RTMHENSQVYIEFFDVRKAKVALQGLNGLEVAGRQLKL 363
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 124 NWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFG 183
N +Y DT+ H +FVG L+ E + F + +A ++ D+ TG+S+G+G
Sbjct: 3 NTSYYRSPFGDTT-HTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYG 61
Query: 184 FVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKG 218
FV+FR A A+ D + R+ CN A+ G
Sbjct: 62 FVTFRDSDSATRAVAD-PNPVIDGRKANCNIASFG 95
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 11/112 (9%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 200
++VG + ++T+ L A FS Y D ++ D+ TG+S+GF F+++ Q+ A+++L
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 201 TGKWLGSRQIR---CNWATKGAGGNEE--KQNSDTKSVV------ELTNGSS 241
G + R I+ C K +EE +QN + + V E T G S
Sbjct: 98 NGALVLGRTIKVDHCGAYKKHEEEDEETRRQNREARGVCRAFQRGECTRGDS 149