Miyakogusa Predicted Gene

Lj3g3v2576290.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2576290.2 tr|G7L8A3|G7L8A3_MEDTR Protein FAM48A OS=Medicago
truncatula GN=MTR_8g021980 PE=4 SV=1,73.18,0,Spt20,Spt20 family;
seg,NULL,CUFF.44237.2
         (953 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G72390.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Spt20 fami...   716   0.0  

>AT1G72390.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Spt20 family
           (InterPro:IPR021950); Has 8778 Blast hits to 7244
           proteins in 477 species: Archae - 6; Bacteria - 326;
           Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses -
           22; Other Eukaryotes - 1797 (source: NCBI BLink). |
           chr1:27245455-27251218 FORWARD LENGTH=1325
          Length = 1325

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/941 (46%), Positives = 573/941 (60%), Gaps = 70/941 (7%)

Query: 1   MGLSFKLSKSGTRYRPKPLPIPPEASHDGVSENSKSQSHLVEAGENTARMLNSSVSSETR 60
           MG+SFK+SK G ++RPK        S +  + +S     L    + T       VS  ++
Sbjct: 1   MGVSFKISKVGRKFRPK-------ISTELATPDSPKAIVLSGKPKATDDSNIGDVSGFSK 53

Query: 61  PLA-----EMEASFTLNLFPDGYSIGKPFENDTASHSRYQDLPKLLHPYDRSSESLFLAI 115
           P       + E SF L+L+P+GYSIGK  E        ++D+PK+LHPYDR++E L  AI
Sbjct: 54  PSLPDISPDHEVSFILSLYPNGYSIGKTSE--AMQQISFRDVPKVLHPYDRAAEGLLSAI 111

Query: 116 ESGHLPGDILDDIPAKYVDGALICEVRDYRKCSFEKGAGIVSPESSPLVNKVCLKMSLEN 175
           E+G LPGDIL+DIP K+VDG +ICEV DYRK +        S + SP++NK+ LKMSLEN
Sbjct: 112 EAGRLPGDILEDIPCKFVDGVVICEVHDYRKHT--------SSQVSPVINKLRLKMSLEN 163

Query: 176 IVKDIPSITDKSWTYGDLMEVESKILKALKPDLHLDPAPKLERLCESSXXXX-----XXX 230
           +VKDIPS++D SWTYGDLMEVES+ILKAL+P+L LDP P+L+RL ++             
Sbjct: 164 VVKDIPSMSDNSWTYGDLMEVESRILKALQPELCLDPLPRLDRLSKNPLTAKLDLSLSTL 223

Query: 231 XXXXXXXMPEFAVTSSNRIYGKKVCIDRVQENSNNRLVDSGITASNAIVQQSLENPAMQN 290
                  M E  V S N+I GKKVCIDR+ E+S     + G    + I+QQ+  N A+QN
Sbjct: 224 RRKRLRQMAEVTVMSQNKIQGKKVCIDRLPESS-----ERGNLPGHLIMQQTNNNQAIQN 278

Query: 291 HSPNIAMALRSKNLM--PDSSIPGFSMPPQQSRYAMAVGNPRSLQEHGSVSAINSSGASP 348
              N+   LRS+ L   P+SS+    +PPQQ RY M +G+ R+ Q+ GS ++++ SGASP
Sbjct: 279 LGTNMLAGLRSQPLQDAPNSSL--ALVPPQQQRY-MGIGSTRNTQDQGS-NSVSVSGASP 334

Query: 349 AAQDVMISY-TDDANPSASLHSKRENQDGQASPLSNVAKRMRPASTGVDAMQQQQIGSHV 407
              D M+ Y +D  NP  S H KRE+Q+GQ S +  + KR R +  G D + QQQ+G  +
Sbjct: 335 GGLDAMLPYGSDSMNPGTSFHRKRESQEGQMSSMPGLNKRTRVSHMGPDGVPQQQLGQRM 394

Query: 408 EGLQGSEINWQNTLLQQQAM-ARGIQYASGGIQKFPQQVFEGGLNQETGAIQFASSQQG- 465
           +GL GS+ NW+NTLLQ Q M  R IQY +  IQ+F     EG +NQE G +QF +SQQG 
Sbjct: 395 DGLHGSDTNWKNTLLQHQDMLGRSIQYPNTSIQRFSPHQMEGVMNQEGGPMQFPASQQGG 454

Query: 466 MRLVAKEEQFEMEKLDGAEINRNKSEMGIDTVNLDXXXXXXXXXXXXNAFMKPNFSQTTW 525
           M+  +KEE FE  K+DG   N N   +G D  +LD            NAF++ NF QT+W
Sbjct: 455 MKYTSKEEPFETGKIDGGTRN-NIPGVGSDANDLDPRIQSRMPH---NAFIRSNFPQTSW 510

Query: 526 NNLAQQHMEKEAKKEDQFQKRKSVQSPRLSTGALPHSPLSSKSGEFSNGSVGPSFGGPSQ 585
           N    Q +EKE KKE+QF +R S QSPRLS G  P SPLSSKSGEFS GS+G  +G  + 
Sbjct: 511 NVNPGQQIEKEPKKEEQFSRRISAQSPRLSAGGPPQSPLSSKSGEFSGGSMGTHYGAVAA 570

Query: 586 ------LASVPAVG-TPSISNDSTXXXXX----XXXXXXXXSNSLPKTPAMNGVGSPASV 634
                 + S+PA+G T S+ + +                  +NSLPKT  ++ VGSP SV
Sbjct: 571 AQKDKAVTSIPAIGATQSVGSSANEAMQQRQHQAQMAAKRRTNSLPKTQVISTVGSPVSV 630

Query: 635 TT-GVPMNVNSPSLGTSSLVDQGVQIQNMVERFSKIEMVTMRHQLNFKK-KVDDYPIKKQ 692
            T  VP+N  SPS+G  +L D  +     ++RFSKIE V  R+QLN KK KVD+Y  ++ 
Sbjct: 631 NTISVPVNARSPSVGPQTLGDHAI-----LDRFSKIERVAARYQLNCKKHKVDEYS-RRP 684

Query: 693 NTYSTQPLASHLGNAINNEGLTDEPSSLSKSLIGGSMNVCKMRVLNFCLPERVLQGNVYS 752
             Y+ QPL   L N  N E   DE  +LSKS+ GGSMN  K RV++F   ERV+QG+V S
Sbjct: 685 RVYAKQPLTVCLSNLSNEEVFKDEDEALSKSIFGGSMNTYKTRVIHFGQMERVMQGSVPS 744

Query: 753 LVPKLRTKMIMSEKPSDGTVSMHYGDIDEGDFVAAEDHLPTLPNTHFADLLAEQFCSQMA 812
            +P+ RT+++MSEK  DGTV+ + GD+DEGD   AED L  LPNTH ADLLA QF S MA
Sbjct: 745 FIPRNRTRLVMSEKAVDGTVAWYQGDVDEGDVFQAEDFLLALPNTHIADLLATQFKSLMA 804

Query: 813 REGYVREDDRVQVKPNRVNF-PLGSQ----SSVPPNSSVGDMQQYGEQMPGQSPNEGPKP 867
           REGY+ E + +  KPNR +  P+ S        P   S  DMQQYG+ + GQ+  E  K 
Sbjct: 805 REGYMIE-EHIMAKPNRGDTGPISSHPNSAGGYPRGYSANDMQQYGDAVAGQASGEASKH 863

Query: 868 AGGSNASFNLPQNLVVNSRMLPPGNTQALQMSQGLLSGVSV 908
               N   N  QN++ N+RM+PP N+QALQMSQGLLSGVS+
Sbjct: 864 GNTGNTPNNSTQNILANARMVPPTNSQALQMSQGLLSGVSM 904