Miyakogusa Predicted Gene

Lj3g3v2575910.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2575910.2 Non Chatacterized Hit- tr|D8R5Y8|D8R5Y8_SELML
Putative uncharacterized protein OS=Selaginella
moelle,43.82,0.000000000000007,39S RIBOSOMAL PROTEIN L43,NULL;
L51_S25_CI-B8,Ribosomal protein/NADH dehydrogenase domain;
Thioredox,CUFF.44201.2
         (90 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59650.1 | Symbols:  | mitochondrial ribosomal protein L51/S2...   160   2e-40
AT3G59650.2 | Symbols:  | mitochondrial ribosomal protein L51/S2...   147   2e-36

>AT3G59650.1 | Symbols:  | mitochondrial ribosomal protein
           L51/S25/CI-B8 family protein | chr3:22033216-22033928
           FORWARD LENGTH=119
          Length = 119

 Score =  160 bits (405), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 72/90 (80%), Positives = 83/90 (92%)

Query: 1   MESHLPEFKEKNPQLEVVTEMIRGQHPHLKGFYENKNQRVVCVKNLDPEDILLQATRLRN 60
           MES LP  KEKNPQLEV+TE+ RGQHP+LKG Y N+N+RVVCVKN+DPE++LL ATRLRN
Sbjct: 30  MESELPALKEKNPQLEVITELSRGQHPYLKGIYRNRNERVVCVKNMDPEEVLLNATRLRN 89

Query: 61  ALGRKVIKLRTRHVTKHPSVQGTWTTAVKY 90
           +LGRKV+KLRTRHVTKHPSVQGTWTTAVK+
Sbjct: 90  SLGRKVVKLRTRHVTKHPSVQGTWTTAVKF 119


>AT3G59650.2 | Symbols:  | mitochondrial ribosomal protein
           L51/S25/CI-B8 family protein | chr3:22033216-22033928
           FORWARD LENGTH=146
          Length = 146

 Score =  147 bits (370), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/117 (61%), Positives = 83/117 (70%), Gaps = 27/117 (23%)

Query: 1   MESHLPEFKEKNPQLEVVTEMIRGQHPHLKGFYE-------------------------- 34
           MES LP  KEKNPQLEV+TE+ RGQHP+LKG Y                           
Sbjct: 30  MESELPALKEKNPQLEVITELSRGQHPYLKGIYSMYISPLLNTILIQRLLILAISLAQFI 89

Query: 35  -NKNQRVVCVKNLDPEDILLQATRLRNALGRKVIKLRTRHVTKHPSVQGTWTTAVKY 90
            N+N+RVVCVKN+DPE++LL ATRLRN+LGRKV+KLRTRHVTKHPSVQGTWTTAVK+
Sbjct: 90  GNRNERVVCVKNMDPEEVLLNATRLRNSLGRKVVKLRTRHVTKHPSVQGTWTTAVKF 146