Miyakogusa Predicted Gene

Lj3g3v2542370.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2542370.1 Non Chatacterized Hit- tr|D8S4A7|D8S4A7_SELML
Putative uncharacterized protein OS=Selaginella
moelle,30.49,7e-18,coiled-coil,NULL; seg,NULL,CUFF.44157.1
         (328 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G53800.2 | Symbols:  | unknown protein; BEST Arabidopsis thal...   160   1e-39
AT1G53800.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   160   1e-39

>AT1G53800.2 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G53250.1); Has 35333 Blast hits to 34131
           proteins in 2444 species: Archae - 798; Bacteria -
           22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
           - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
           chr1:20081888-20084320 FORWARD LENGTH=572
          Length = 572

 Score =  160 bits (405), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 165/316 (52%), Gaps = 19/316 (6%)

Query: 1   MKLVNPRNAHSAERKQKIAAGVKMRWQRRREKMAVQETCCLEWQNLIAQASREGYVDQKE 60
           MKL N  +A + E + KI  GV+MRW RR+E+  VQETC  EWQNL+A+A+++GY D++E
Sbjct: 155 MKLANLGHAQNKETRMKIGEGVRMRWARRKERRKVQETCHFEWQNLLAEAAKQGYTDEEE 214

Query: 61  LQWNXXXXXXXXXXXXXXXXXXQRKQMPRAPGSKTTPWTSGQRRKVAEAIS---VDLEYR 117
           LQW+                  QRK +  A  ++  P +  QRR++AEAI+    D  YR
Sbjct: 215 LQWDSYNILDQQNQLEWLESVEQRKAIKGAKSNRRAPKSPEQRRRIAEAIAAKWADPSYR 274

Query: 118 RKGYTTKAKYHDIE-GAEMKPRRRPSDDGQSTRSNTVMEKDPANDISVESRTRILNLISS 176
            +  +  AKYH I  G E + RR  SD     ++ T   K    D   E ++++  ++  
Sbjct: 275 ERVCSGLAKYHGIPVGVERRRRRPRSDAEPRKKTPT---KKSTRDSEFERQSQV-QVVKV 330

Query: 177 GNAEFPAFKDHLESPKLDMMKSVKAQRGVAETKLNKXXXXXXXXXXXXXXXXXXXXXTEM 236
              + PA+KD L S KL+M+KS++A+R   E+K                          +
Sbjct: 331 RKRKTPAYKDPLASSKLEMIKSIRAKRVAEESKKMDAVERARLLISEAEKAAKVLEIAAL 390

Query: 237 KSPFAQASLMESRKLIAEAIQSLQSIDTKGITASNVPSVALAMANEENDTEFEV------ 290
           KSP AQASL+ES+KLIAEA Q ++S++ + I +    +    ++ + ND+E E       
Sbjct: 391 KSPVAQASLLESKKLIAEATQLIKSLEMRQIASDEDGTYPFLLSPQPNDSESETKDTNDQ 450

Query: 291 -----LSQSHMLPING 301
                ++ +H L ING
Sbjct: 451 ERPGEINGTHTLQING 466


>AT1G53800.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G53250.1); Has 1136 Blast hits to 882 proteins
           in 242 species: Archae - 2; Bacteria - 216; Metazoa -
           257; Fungi - 77; Plants - 87; Viruses - 4; Other
           Eukaryotes - 493 (source: NCBI BLink). |
           chr1:20081888-20084320 FORWARD LENGTH=568
          Length = 568

 Score =  160 bits (405), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 165/316 (52%), Gaps = 19/316 (6%)

Query: 1   MKLVNPRNAHSAERKQKIAAGVKMRWQRRREKMAVQETCCLEWQNLIAQASREGYVDQKE 60
           MKL N  +A + E + KI  GV+MRW RR+E+  VQETC  EWQNL+A+A+++GY D++E
Sbjct: 151 MKLANLGHAQNKETRMKIGEGVRMRWARRKERRKVQETCHFEWQNLLAEAAKQGYTDEEE 210

Query: 61  LQWNXXXXXXXXXXXXXXXXXXQRKQMPRAPGSKTTPWTSGQRRKVAEAIS---VDLEYR 117
           LQW+                  QRK +  A  ++  P +  QRR++AEAI+    D  YR
Sbjct: 211 LQWDSYNILDQQNQLEWLESVEQRKAIKGAKSNRRAPKSPEQRRRIAEAIAAKWADPSYR 270

Query: 118 RKGYTTKAKYHDIE-GAEMKPRRRPSDDGQSTRSNTVMEKDPANDISVESRTRILNLISS 176
            +  +  AKYH I  G E + RR  SD     ++ T   K    D   E ++++  ++  
Sbjct: 271 ERVCSGLAKYHGIPVGVERRRRRPRSDAEPRKKTPT---KKSTRDSEFERQSQV-QVVKV 326

Query: 177 GNAEFPAFKDHLESPKLDMMKSVKAQRGVAETKLNKXXXXXXXXXXXXXXXXXXXXXTEM 236
              + PA+KD L S KL+M+KS++A+R   E+K                          +
Sbjct: 327 RKRKTPAYKDPLASSKLEMIKSIRAKRVAEESKKMDAVERARLLISEAEKAAKVLEIAAL 386

Query: 237 KSPFAQASLMESRKLIAEAIQSLQSIDTKGITASNVPSVALAMANEENDTEFEV------ 290
           KSP AQASL+ES+KLIAEA Q ++S++ + I +    +    ++ + ND+E E       
Sbjct: 387 KSPVAQASLLESKKLIAEATQLIKSLEMRQIASDEDGTYPFLLSPQPNDSESETKDTNDQ 446

Query: 291 -----LSQSHMLPING 301
                ++ +H L ING
Sbjct: 447 ERPGEINGTHTLQING 462