Miyakogusa Predicted Gene
- Lj3g3v2531180.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2531180.1 Non Chatacterized Hit- tr|I3T043|I3T043_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.63,0,seg,NULL;
Chlorophyll a-b binding protein,Chlorophyll a/b binding protein
domain; no description,Chl,CUFF.44171.1
(269 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G61470.1 | Symbols: LHCA2 | photosystem I light harvesting co... 419 e-117
AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | photosystem I light harv... 301 4e-82
AT3G47470.1 | Symbols: LHCA4, CAB4 | light-harvesting chlorophyl... 228 3e-60
AT5G28450.1 | Symbols: | Chlorophyll A-B binding family protein... 204 4e-53
AT1G45474.2 | Symbols: LHCA5 | photosystem I light harvesting co... 199 2e-51
AT1G45474.1 | Symbols: LHCA5 | photosystem I light harvesting co... 199 2e-51
AT1G61520.3 | Symbols: LHCA3 | photosystem I light harvesting co... 174 7e-44
AT1G61520.1 | Symbols: LHCA3 | photosystem I light harvesting co... 174 7e-44
AT1G61520.2 | Symbols: LHCA3 | photosystem I light harvesting co... 149 2e-36
AT3G54890.1 | Symbols: LHCA1 | photosystem I light harvesting co... 143 1e-34
AT1G15820.1 | Symbols: LHCB6, CP24 | light harvesting complex ph... 135 4e-32
AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting chloro... 132 2e-31
AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light har... 132 2e-31
AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | photosystem II light har... 132 2e-31
AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyl... 131 4e-31
AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-bi... 131 5e-31
AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B bi... 131 5e-31
AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II ... 130 7e-31
AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light ha... 130 8e-31
AT5G01530.1 | Symbols: LHCB4.1 | light harvesting complex photos... 123 1e-28
AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | light-harvesting chlorop... 122 2e-28
AT3G08940.2 | Symbols: LHCB4.2 | light harvesting complex photos... 120 7e-28
AT1G76570.1 | Symbols: | Chlorophyll A-B binding family protein... 120 8e-28
AT4G10340.1 | Symbols: LHCB5 | light harvesting complex of photo... 116 2e-26
AT3G54890.4 | Symbols: LHCA1 | photosystem I light harvesting co... 110 1e-24
AT3G54890.2 | Symbols: LHCA1 | photosystem I light harvesting co... 108 3e-24
AT2G40100.1 | Symbols: LHCB4.3 | light harvesting complex photos... 102 3e-22
AT3G54890.3 | Symbols: LHCA1 | photosystem I light harvesting co... 78 5e-15
AT2G40100.2 | Symbols: LHCB4.3 | light harvesting complex photos... 62 4e-10
AT3G08940.1 | Symbols: LHCB4.2 | light harvesting complex photos... 62 6e-10
>AT3G61470.1 | Symbols: LHCA2 | photosystem I light harvesting
complex gene 2 | chr3:22745736-22747032 FORWARD
LENGTH=257
Length = 257
Score = 419 bits (1077), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/226 (89%), Positives = 214/226 (94%), Gaps = 1/226 (0%)
Query: 45 TAPVGARSTTTVCA-AAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNV 103
T P +R +V A AA+PDRP+WFPGSTPP WLDGSLPGDFGFDPLGLSSDP+SL+WNV
Sbjct: 32 TVPAVSRPDASVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNV 91
Query: 104 QAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELIFIGWA 163
QAE+VHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTD TTLF+VELI IGWA
Sbjct: 92 QAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWA 151
Query: 164 EGRRWADILKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIK 223
EGRRWADI+KPGSVNTDP+FPNNKLTGTDVGYPGGLWFDPLGWGSGSP KLKELRTKEIK
Sbjct: 152 EGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIK 211
Query: 224 NGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 269
NGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT+FAAFTPK
Sbjct: 212 NGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 257
>AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | photosystem I light
harvesting complex gene 6 | chr1:6612806-6613799 FORWARD
LENGTH=270
Length = 270
Score = 301 bits (770), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 138/233 (59%), Positives = 170/233 (72%)
Query: 35 SGRKLKVNTFTAPVGARSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSS 94
+G +L + ++VC PDRPLWFPGS+PP WLDGSLPGDFGFDPLGL S
Sbjct: 36 TGGRLMRERLVVVRAGKEVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGS 95
Query: 95 DPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFI 154
DP++L+W QAEL+H RWAML GI IPE L ++G + SWY AG +EYF D+TTLF+
Sbjct: 96 DPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFV 155
Query: 155 VELIFIGWAEGRRWADILKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKL 214
+++ +GWAEGRRWAD++KPGSV+ +P +P+ DVGYPGGLWFD + WG GSP+ +
Sbjct: 156 AQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPV 215
Query: 215 KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFT 267
LRTKEIKNGRLAMLA +G FQ YT PI+NL AHLADPGH VF+AFT
Sbjct: 216 MVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFT 268
>AT3G47470.1 | Symbols: LHCA4, CAB4 | light-harvesting
chlorophyll-protein complex I subunit A4 |
chr3:17493622-17494773 REVERSE LENGTH=251
Length = 251
Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 119/245 (48%), Positives = 155/245 (63%), Gaps = 11/245 (4%)
Query: 26 PLGTTKAFLSGRKLKVN---TFTAPVGARSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLP 82
P + FL+G ++N +FT+ +G+ S T E + W PG P +L GSL
Sbjct: 15 PCTSKPRFLTGSSGRLNRDLSFTS-IGS-SAKTSSFKVEAKKGEWLPGLASPDYLTGSLA 72
Query: 83 GDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGE 142
GD GFDPLGL+ DPE+L+W VQAELV+ RWAMLG AG+ +PE TKIGI+N P WY AG+
Sbjct: 73 GDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGK 132
Query: 143 QEYFTDTTTLFIVELIFIGWAEGRRWADILKPGSVNTDPIFPNNKLTGTDVGYPGGLWFD 202
++YF ++TLF++E I + E RRW DI PGSVN DPIF L +VGYPGG+ F+
Sbjct: 133 EQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FN 191
Query: 203 PLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATV 262
PL + +E + KE+ NGRLAMLA +G QH TG GP +NL HL+DP H T+
Sbjct: 192 PLNFAP-----TQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTI 246
Query: 263 FAAFT 267
F
Sbjct: 247 VQTFN 251
>AT5G28450.1 | Symbols: | Chlorophyll A-B binding family protein |
chr5:10372978-10374190 REVERSE LENGTH=173
Length = 173
Score = 204 bits (519), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 95/103 (92%), Positives = 100/103 (97%)
Query: 167 RWADILKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGR 226
R DI+KPGSVNTDP+FPNNKLTGTD+GYPGGLWFDPLGWGSGSP K+KELRTKEIKNGR
Sbjct: 71 RAPDIIKPGSVNTDPVFPNNKLTGTDIGYPGGLWFDPLGWGSGSPTKIKELRTKEIKNGR 130
Query: 227 LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 269
LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT+FAAFTPK
Sbjct: 131 LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 173
>AT1G45474.2 | Symbols: LHCA5 | photosystem I light harvesting
complex gene 5 | chr1:17179353-17180439 FORWARD
LENGTH=256
Length = 256
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/247 (44%), Positives = 144/247 (58%), Gaps = 17/247 (6%)
Query: 28 GTTKAFLSGRKLKVNTFTAPVGARSTTTVCAA-------AEPDRPLWFPGSTPPPWLDGS 80
G T FL R+ + T R ++V AA +R W PG PPP+LDG+
Sbjct: 8 GITGGFLHHRRDASSVIT-----RRISSVKAAGGGINPTVAVERATWLPGLNPPPYLDGN 62
Query: 81 LPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTA 140
L GD+GFDPLGL DPESL+W VQAELVH R+AMLG AGI + L GI N P WY A
Sbjct: 63 LAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEA 122
Query: 141 GEQEY-FTDTTTLFIVELIFIGWAEGRRWADILKPGSVNTDPIF---PNNKLTGTDVGYP 196
G ++ F T TL +V+ + +G+AE +R+ D + PGS + F L G + GYP
Sbjct: 123 GAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYP 182
Query: 197 GGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLAD 256
GG +PLG Q + + KEIKNGRLAM+A++G + Q T TGPIDNL HL++
Sbjct: 183 GGPLLNPLGLAK-DVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSN 241
Query: 257 PGHATVF 263
P H T+
Sbjct: 242 PWHKTII 248
>AT1G45474.1 | Symbols: LHCA5 | photosystem I light harvesting
complex gene 5 | chr1:17179353-17180439 FORWARD
LENGTH=256
Length = 256
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/247 (44%), Positives = 144/247 (58%), Gaps = 17/247 (6%)
Query: 28 GTTKAFLSGRKLKVNTFTAPVGARSTTTVCAA-------AEPDRPLWFPGSTPPPWLDGS 80
G T FL R+ + T R ++V AA +R W PG PPP+LDG+
Sbjct: 8 GITGGFLHHRRDASSVIT-----RRISSVKAAGGGINPTVAVERATWLPGLNPPPYLDGN 62
Query: 81 LPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTA 140
L GD+GFDPLGL DPESL+W VQAELVH R+AMLG AGI + L GI N P WY A
Sbjct: 63 LAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEA 122
Query: 141 GEQEY-FTDTTTLFIVELIFIGWAEGRRWADILKPGSVNTDPIF---PNNKLTGTDVGYP 196
G ++ F T TL +V+ + +G+AE +R+ D + PGS + F L G + GYP
Sbjct: 123 GAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYP 182
Query: 197 GGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLAD 256
GG +PLG Q + + KEIKNGRLAM+A++G + Q T TGPIDNL HL++
Sbjct: 183 GGPLLNPLGLAK-DVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSN 241
Query: 257 PGHATVF 263
P H T+
Sbjct: 242 PWHKTII 248
>AT1G61520.3 | Symbols: LHCA3 | photosystem I light harvesting
complex gene 3 | chr1:22700152-22701149 FORWARD
LENGTH=273
Length = 273
Score = 174 bits (440), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 140/239 (58%), Gaps = 25/239 (10%)
Query: 51 RSTTTVCAAAEP------DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESL----- 99
+S+ V AAA P +RPLWF S +LDGSLPGD+GFDPLGLS DPE
Sbjct: 34 KSSFVVKAAATPPVKQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIE 92
Query: 100 -RWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPS---WYT------AGEQEYFTDT 149
RW E+++ R+AMLGAAG PE L K G++ + W+ AG Y+ D
Sbjct: 93 PRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADN 152
Query: 150 TTLFIVELIFIGWAEGRRWADILKPGSVNTDPIFPNNK-LTGT-DVGYPGGLWFDPLGWG 207
TLF++E+ +G+AE RR D PGS+ K L G+ + YPGG +F+PLG+G
Sbjct: 153 YTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFG 212
Query: 208 SGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAF 266
+ LKEL+ KE+KNGRLAMLA++G + Q + TG GP NL HLADP + V +
Sbjct: 213 K-DEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>AT1G61520.1 | Symbols: LHCA3 | photosystem I light harvesting
complex gene 3 | chr1:22700152-22701149 FORWARD
LENGTH=273
Length = 273
Score = 174 bits (440), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 140/239 (58%), Gaps = 25/239 (10%)
Query: 51 RSTTTVCAAAEP------DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESL----- 99
+S+ V AAA P +RPLWF S +LDGSLPGD+GFDPLGLS DPE
Sbjct: 34 KSSFVVKAAATPPVKQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIE 92
Query: 100 -RWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPS---WYT------AGEQEYFTDT 149
RW E+++ R+AMLGAAG PE L K G++ + W+ AG Y+ D
Sbjct: 93 PRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADN 152
Query: 150 TTLFIVELIFIGWAEGRRWADILKPGSVNTDPIFPNNK-LTGT-DVGYPGGLWFDPLGWG 207
TLF++E+ +G+AE RR D PGS+ K L G+ + YPGG +F+PLG+G
Sbjct: 153 YTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFG 212
Query: 208 SGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAF 266
+ LKEL+ KE+KNGRLAMLA++G + Q + TG GP NL HLADP + V +
Sbjct: 213 K-DEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>AT1G61520.2 | Symbols: LHCA3 | photosystem I light harvesting
complex gene 3 | chr1:22700493-22701149 FORWARD
LENGTH=218
Length = 218
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 121/204 (59%), Gaps = 19/204 (9%)
Query: 80 SLPGDFGFDPLGLSSDPESL------RWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILN 133
SLPGD+GFDPLGLS DPE RW E+++ R+AMLGAAG PE L K G++
Sbjct: 14 SLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIP 72
Query: 134 TPS---WYT------AGEQEYFTDTTTLFIVELIFIGWAEGRRWADILKPGSVNTDPIFP 184
+ W+ AG Y+ D TLF++E+ +G+AE RR D PGS+
Sbjct: 73 AETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLG 132
Query: 185 NNK-LTGT-DVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYT 242
K L G+ + YPGG +F+PLG+G + LKEL+ KE+KNGRLAMLA++G + Q + T
Sbjct: 133 LEKGLAGSGNPAYPGGPFFNPLGFGK-DEKSLKELKLKEVKNGRLAMLAILGYFIQGLVT 191
Query: 243 GTGPIDNLFAHLADPGHATVFAAF 266
G GP NL HLADP + V +
Sbjct: 192 GVGPYQNLLDHLADPVNNNVLTSL 215
>AT3G54890.1 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339706-20340922 REVERSE
LENGTH=241
Length = 241
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 111/205 (54%), Gaps = 28/205 (13%)
Query: 67 WFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFL 126
W PG P +LDGS PGDFGFDPLGL P +L ++EL+HCRWAML GI +PE L
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
Query: 127 TKIGILNTPSWYT--AGEQEYFTDTT------TLFIVELIFIGWAEGRRWADILKPGSVN 178
+ W G+ Y + T+ +E + I + E +R S+
Sbjct: 108 GYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR--------SME 159
Query: 179 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQ 238
DP YPGG FDPLG+ S P+KL+EL+ KEIKNGRLA+LA +G Q
Sbjct: 160 KDP---------EKKKYPGGA-FDPLGY-SKDPKKLEELKVKEIKNGRLALLAFVGFCVQ 208
Query: 239 H-IYTGTGPIDNLFAHLADPGHATV 262
Y GTGP++NL HLADP H +
Sbjct: 209 QSAYPGTGPLENLATHLADPWHNNI 233
>AT1G15820.1 | Symbols: LHCB6, CP24 | light harvesting complex
photosystem II subunit 6 | chr1:5446685-5447676 REVERSE
LENGTH=258
Length = 258
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 119/240 (49%), Gaps = 35/240 (14%)
Query: 28 GTTKAFLSGRKLKVNTFTAPVG------ARSTTTVCAAAEPDRPLWFPGST------PPP 75
G +FL+G K + VG R T V AAA + W P P
Sbjct: 12 GLGSSFLTGGKRGATALASGVGTGAQRVGRKTLIVAAAAAQPKKSWIPAVKGGGNFLDPE 71
Query: 76 WLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTP 135
WLDGSLPGDFGFDPLGL DP L+W +AEL+H RWAM GIF+ + + +
Sbjct: 72 WLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGV------ 125
Query: 136 SWYTAGEQEYFT---DTTTLFIVELIFIGWAEGRRWADILKPGSVNTDPIFPNNKLTGT- 191
+W+ AG Q +L +L+ +GW E +RW D P S + + P +K
Sbjct: 126 AWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENF 185
Query: 192 -----DVGYPGGLWFDPLGWGSGSP--------QKLKELRTKEIKNGRLAMLAVMGAWFQ 238
D GYPGG +FDPLG + +KL+ L+ EIK+ RLAM+A++ +F+
Sbjct: 186 ANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAMLIFYFE 245
>AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting
chlorophyll-protein complex II subunit B1 |
chr2:14524818-14525618 FORWARD LENGTH=266
Length = 266
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 128/254 (50%), Gaps = 28/254 (11%)
Query: 25 SPLGTTKAFLSGRKLKVNTFTAPVGARSTTTVCAAAEPDRPLWFP-------------GS 71
S + + L+G+ +K++ + V T+ A++P P P
Sbjct: 4 STMALSSPALTGKAVKLSPAASEVFGTGRITMRKASKPTGPSGSPWYGSDRVKYLGPFSG 63
Query: 72 TPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI 131
PP +L G PGD+G+D GLS+DPE+ N + E++H RWAMLGA G PE L + G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 132 -LNTPSWYTAGEQEY------FTDTTTLFIVELIFIGWAEGRRWADILKPGSVNTDPIFP 184
W+ AG Q + + +L + I WA ++ G+V +
Sbjct: 124 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAG 178
Query: 185 NNKL-TGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTG 243
+ L D+ YPGG FDPLG + P+ EL+ KE+KNGRLAM ++ G + Q I TG
Sbjct: 179 DGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 236
Query: 244 TGPIDNLFAHLADP 257
GP++NL HLADP
Sbjct: 237 KGPLENLADHLADP 250
>AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light
harvesting complex gene 2.1 | chr2:1823449-1824331
REVERSE LENGTH=265
Length = 265
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 112/214 (52%), Gaps = 34/214 (15%)
Query: 62 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAG 119
PDRP + P +L G PGD+G+D GLS+DPE+ N + E++H RWAMLGA G
Sbjct: 52 PDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
Query: 120 IFIPEFLTKIGI-LNTPSWYTAGEQ-------EYFTD--------TTTLFIVELIFIGWA 163
PE L+K G+ W+ AG Q +Y + ++ V+++ +G+
Sbjct: 112 CTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFI 171
Query: 164 EGRRWADILKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIK 223
EG R P DP+ YPGG FDPL P+ EL+ KE+K
Sbjct: 172 EGYRIGG--GPLGEGLDPL------------YPGGA-FDPLNLAE-DPEAFSELKVKELK 215
Query: 224 NGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
NGRLAM ++ G + Q I TG GPI+NLF HLADP
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 249
>AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | photosystem II light
harvesting complex gene 2.2 | chr2:1799436-1800329
REVERSE LENGTH=265
Length = 265
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 112/214 (52%), Gaps = 34/214 (15%)
Query: 62 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAG 119
PDRP + P +L G PGD+G+D GLS+DPE+ N + E++H RWAMLGA G
Sbjct: 52 PDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
Query: 120 IFIPEFLTKIGI-LNTPSWYTAGEQ-------EYFTD--------TTTLFIVELIFIGWA 163
PE L+K G+ W+ AG Q +Y + ++ V+++ +G+
Sbjct: 112 CTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFI 171
Query: 164 EGRRWADILKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIK 223
EG R P DP+ YPGG FDPL P+ EL+ KE+K
Sbjct: 172 EGYRIGG--GPLGEGLDPL------------YPGGA-FDPLNLAE-DPEAFSELKVKELK 215
Query: 224 NGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
NGRLAM ++ G + Q I TG GPI+NLF HLADP
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 249
>AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll
A/B binding protein 1 | chr1:10478071-10478874 FORWARD
LENGTH=267
Length = 267
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 106/192 (55%), Gaps = 15/192 (7%)
Query: 74 PPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI-L 132
P +L G PGD+G+D GLS+DPE+ N + E++H RWAMLGA G PE L + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 133 NTPSWYTAGEQEY------FTDTTTLFIVELIFIGWAEGRRWADILKPGSVNTDPIFPNN 186
W+ AG Q + + +L + I WA ++ G+V + N
Sbjct: 127 GEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAGNG 181
Query: 187 KL-TGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 245
L D+ YPGG FDPLG + P+ EL+ KE+KNGRLAM ++ G + Q I TG G
Sbjct: 182 PLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 246 PIDNLFAHLADP 257
PI+NL HLADP
Sbjct: 240 PIENLADHLADP 251
>AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll
A/B-binding protein 2 | chr1:10475089-10475892 REVERSE
LENGTH=267
Length = 267
Score = 131 bits (329), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 106/192 (55%), Gaps = 15/192 (7%)
Query: 74 PPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI-L 132
P +L G PGD+G+D GLS+DPE+ N + E++H RWAMLGA G PE L + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 133 NTPSWYTAGEQEY------FTDTTTLFIVELIFIGWAEGRRWADILKPGSVNTDPIFPNN 186
W+ AG Q + + +L + I WA ++ G+V + N
Sbjct: 127 GEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAGNG 181
Query: 187 KL-TGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 245
L D+ YPGG FDPLG + P+ EL+ KE+KNGRLAM ++ G + Q I TG G
Sbjct: 182 PLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 246 PIDNLFAHLADP 257
PI+NL HLADP
Sbjct: 240 PIENLADHLADP 251
>AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B
binding protein 3 | chr1:10472443-10473246 REVERSE
LENGTH=267
Length = 267
Score = 131 bits (329), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 106/192 (55%), Gaps = 15/192 (7%)
Query: 74 PPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI-L 132
P +L G PGD+G+D GLS+DPE+ N + E++H RWAMLGA G PE L + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 133 NTPSWYTAGEQEY------FTDTTTLFIVELIFIGWAEGRRWADILKPGSVNTDPIFPNN 186
W+ AG Q + + +L + I WA ++ G+V + N
Sbjct: 127 GEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAGNG 181
Query: 187 KL-TGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 245
L D+ YPGG FDPLG + P+ EL+ KE+KNGRLAM ++ G + Q I TG G
Sbjct: 182 PLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 246 PIDNLFAHLADP 257
PI+NL HLADP
Sbjct: 240 PIENLADHLADP 251
>AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II
light harvesting complex gene 2.3 |
chr3:10256002-10256921 FORWARD LENGTH=266
Length = 266
Score = 130 bits (328), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 107/205 (52%), Gaps = 16/205 (7%)
Query: 62 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAG 119
PDRP + P +L G PGD+G+D GLS+DPE+ N + E++H RWAMLGA G
Sbjct: 53 PDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 112
Query: 120 IFIPEFLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELIFIGWAEGRRWADIL 172
PE L+K G+ W+ AG Q + + L + I WA +
Sbjct: 113 CTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFI 172
Query: 173 KPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAV 232
+ + P+ G D YPGG FDPL P+ EL+ KE+KNGRLAM ++
Sbjct: 173 EGYRIGGGPLG-----EGLDPLYPGGA-FDPLNLAE-DPEAFSELKVKELKNGRLAMFSM 225
Query: 233 MGAWFQHIYTGTGPIDNLFAHLADP 257
G + Q I TG GPI+NLF H+ADP
Sbjct: 226 FGFFVQAIVTGKGPIENLFDHIADP 250
>AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light
harvesting complex gene B1B2 | chr2:14522716-14523513
REVERSE LENGTH=265
Length = 265
Score = 130 bits (328), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 107/193 (55%), Gaps = 15/193 (7%)
Query: 73 PPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI- 131
PP +L G PGD+G+D GLS+DPE+ N + E++H RWAMLGA G PE L + G+
Sbjct: 64 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 123
Query: 132 LNTPSWYTAGEQEY------FTDTTTLFIVELIFIGWAEGRRWADILKPGSVNTDPIFPN 185
W+ AG Q + + +L + I WA ++ G+V + +
Sbjct: 124 FGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAGD 178
Query: 186 NKL-TGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 244
L D+ YPGG FDPLG + P+ EL+ KE+KNGRLAM ++ G + Q I TG
Sbjct: 179 GPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 245 GPIDNLFAHLADP 257
GP++NL HLADP
Sbjct: 237 GPLENLADHLADP 249
>AT5G01530.1 | Symbols: LHCB4.1 | light harvesting complex
photosystem II | chr5:209084-210243 FORWARD LENGTH=290
Length = 290
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 117/259 (45%), Gaps = 78/259 (30%)
Query: 63 DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNV------------------- 103
DRPLW+PG+ P WLDGSL GD+GFDP GL E L++++
Sbjct: 54 DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTR 113
Query: 104 ------------------------QAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYT 139
+ EL+H RWAML G E+LT + +W
Sbjct: 114 TEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGV------TWQD 167
Query: 140 AGEQEYFTDTT-----------TLFIVELIFIGWAEGRRWADILKPGSVNTDPIFPNNKL 188
AG+ E ++ TL +E++ IG+ E +R N +L
Sbjct: 168 AGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-----------------NAEL 210
Query: 189 TGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 248
YPGG +FDPLG + P+K +L+ EIK+ RLAM+A +G Q TG GP++
Sbjct: 211 DSEKRLYPGGKFFDPLGLAA-DPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLN 269
Query: 249 NLFAHLADPGHATVFAAFT 267
N HL+DP H T+ F+
Sbjct: 270 NWATHLSDPLHTTIIDTFS 288
>AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | light-harvesting
chlorophyll B-binding protein 3 | chr5:22038424-22039383
FORWARD LENGTH=265
Length = 265
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 103/201 (51%), Gaps = 32/201 (15%)
Query: 74 PPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTK-IGI- 131
P +L G PGD+G+D GLS+DPE+ N E++H RWAMLGA G PE L K + +
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRVD 123
Query: 132 LNTPSWYTAGEQEY------------FTDTTTLFIV---ELIFIGWAEGRRWADILKPGS 176
P W+ AG Q + ++ V ++I +G EG R +
Sbjct: 124 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGL----- 178
Query: 177 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAW 236
D + N L YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 179 ---DGVGEGNDL------YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 228
Query: 237 FQHIYTGTGPIDNLFAHLADP 257
Q I TG GP++NL HL +P
Sbjct: 229 VQAIVTGKGPLENLLDHLDNP 249
>AT3G08940.2 | Symbols: LHCB4.2 | light harvesting complex
photosystem II | chr3:2717717-2718665 FORWARD LENGTH=287
Length = 287
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 115/259 (44%), Gaps = 78/259 (30%)
Query: 63 DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNV------------------- 103
DRPLWFPG+ P +LDGSL GD+GFDP GL E L++++
Sbjct: 51 DRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTR 110
Query: 104 ------------------------QAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYT 139
+ EL+H RWAML G E+LT + +W
Sbjct: 111 TEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGV------TWQD 164
Query: 140 AGEQEYFTDTT-----------TLFIVELIFIGWAEGRRWADILKPGSVNTDPIFPNNKL 188
AG+ E ++ TL +E++ IG+ E +R N +L
Sbjct: 165 AGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-----------------NAEL 207
Query: 189 TGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 248
YPGG +FDPLG S P K +L+ EIK+ RLAM+ +G Q TG GP++
Sbjct: 208 DSEKRLYPGGKFFDPLGLAS-DPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLN 266
Query: 249 NLFAHLADPGHATVFAAFT 267
N HL+DP H T+ F+
Sbjct: 267 NWATHLSDPLHTTIIDTFS 285
>AT1G76570.1 | Symbols: | Chlorophyll A-B binding family protein |
chr1:28729132-28730754 FORWARD LENGTH=327
Length = 327
Score = 120 bits (301), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 106/216 (49%), Gaps = 16/216 (7%)
Query: 63 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAG 119
+RP WF G P PP+L G LPGD+GFD GL D + E++H RWAML A G
Sbjct: 110 ERPRWF-GPIPYDYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALG 168
Query: 120 IFIPEFLTKIGILN--TPSWYTAGEQEYFTDTTTLFIVELIFIGWAEGRRWADILK---- 173
IPE G + P W+ G + +T + + + ++G I +
Sbjct: 169 ALIPEVFDLTGTFHFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAICQVLLM 228
Query: 174 -----PGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLA 228
+ + P D+ YPGG FDPL S P ++L+ KEIKNGRLA
Sbjct: 229 VGPEYARYCGIEALEPLGIYLPGDINYPGGTLFDPLNL-SEDPVAFEDLKVKEIKNGRLA 287
Query: 229 MLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 264
M+A +G + Q +TG GP+ NL H++DP H + A
Sbjct: 288 MVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLIA 323
>AT4G10340.1 | Symbols: LHCB5 | light harvesting complex of
photosystem II 5 | chr4:6408200-6409496 FORWARD
LENGTH=280
Length = 280
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 106/204 (51%), Gaps = 15/204 (7%)
Query: 62 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLG 116
PDR ++ P S P +L+G + GD+G+DP GL PE+ EL+H RWAMLG
Sbjct: 65 PDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLG 124
Query: 117 AAGIFIPEFLTKIGILNTPS--WYTAGEQEYFTDTTTL-FIVELIFIGWAEGRRWADILK 173
AAG IPE L K G P W+ G D TL + + I I +L
Sbjct: 125 AAGFIIPEALNKYGANCGPEAVWFKTG--ALLLDGNTLNYFGKNIPINLVLAVVAEVVLL 182
Query: 174 PGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVM 233
G+ + N L D +PGG FDPLG P++ L+ KEIKNGRLAM A++
Sbjct: 183 GGA---EYYRITNGLDFEDKLHPGG-PFDPLGLAK-DPEQGALLKVKEIKNGRLAMFAML 237
Query: 234 GAWFQHIYTGTGPIDNLFAHLADP 257
G + Q TG GP++NL HL+DP
Sbjct: 238 GFFIQAYVTGEGPVENLAKHLSDP 261
>AT3G54890.4 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339881-20340922 REVERSE
LENGTH=213
Length = 213
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 87/168 (51%), Gaps = 27/168 (16%)
Query: 67 WFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFL 126
W PG P +LDGS PGDFGFDPLGL P +L ++EL+HCRWAML GI +PE L
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
Query: 127 TKIGILNTPSWYT--AGEQEYFTDTT------TLFIVELIFIGWAEGRRWADILKPGSVN 178
+ W G+ Y + T+ +E + I + E +R S+
Sbjct: 108 GYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR--------SME 159
Query: 179 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGR 226
DP YPGG FDPLG+ S P+KL+EL+ KEIKNG+
Sbjct: 160 KDP---------EKKKYPGGA-FDPLGY-SKDPKKLEELKVKEIKNGK 196
>AT3G54890.2 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339706-20340922 REVERSE
LENGTH=207
Length = 207
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 93/205 (45%), Gaps = 62/205 (30%)
Query: 67 WFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFL 126
W PG P +LDGS PGDFGFDPLGL P +L ++EL+HCRWAML GI +PE L
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
Query: 127 TKIGILNTPSWYTAGEQEYFTDTTTLFIVELIFIGWAEGRRWADILKPGSVNTDPIFPNN 186
+ W + + WA
Sbjct: 108 G-------------------------------YGNWVKAQEWA----------------- 119
Query: 187 KLTGTDVGYPGGLWFDPLGWGSGSPQKLK--------ELRTKEIKNGRLAMLAVMGAWFQ 238
L G Y G +P+ WG+ P L EL+ KEIKNGRLA+LA +G Q
Sbjct: 120 ALPGGQATYLG----NPVPWGT-LPTILAIEFLAIAFELKVKEIKNGRLALLAFVGFCVQ 174
Query: 239 H-IYTGTGPIDNLFAHLADPGHATV 262
Y GTGP++NL HLADP H +
Sbjct: 175 QSAYPGTGPLENLATHLADPWHNNI 199
>AT2G40100.1 | Symbols: LHCB4.3 | light harvesting complex
photosystem II | chr2:16745884-16747190 FORWARD
LENGTH=276
Length = 276
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 105/242 (43%), Gaps = 79/242 (32%)
Query: 63 DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNV------------------- 103
DR +WFPG+ PP WLDGS+ GD GFDP GL E L+++
Sbjct: 55 DRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGII 114
Query: 104 ------------------------QAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYT 139
+ EL+H RWAMLG G E LT I +W
Sbjct: 115 QESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGI------AWQD 168
Query: 140 AGEQEYFTDT-----------TTLFIVELIFIGWAEGRRWADILKPGSVNTDPIFPNNKL 188
AG+ E + TTL +E++ +G+ E +R N++L
Sbjct: 169 AGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQR-----------------NSEL 211
Query: 189 TGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 248
YPGG +FDPLG + P+KL L+ EIK+ RLAM+A + Q +TG GP+
Sbjct: 212 DPEKRIYPGG-YFDPLGLAA-DPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVS 269
Query: 249 NL 250
L
Sbjct: 270 FL 271
>AT3G54890.3 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339961-20340922 REVERSE
LENGTH=164
Length = 164
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 41/60 (68%)
Query: 67 WFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFL 126
W PG P +LDGS PGDFGFDPLGL P +L ++EL+HCRWAML GI +PE L
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
>AT2G40100.2 | Symbols: LHCB4.3 | light harvesting complex
photosystem II | chr2:16745884-16746545 FORWARD
LENGTH=185
Length = 185
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 51/125 (40%), Gaps = 49/125 (39%)
Query: 63 DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNV------------------- 103
DR +WFPG+ PP WLDGS+ GD GFDP GL E L+++
Sbjct: 55 DRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGII 114
Query: 104 ------------------------QAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYT 139
+ EL+H RWAMLG G E LT I +W
Sbjct: 115 QESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGI------AWQD 168
Query: 140 AGEQE 144
AG+ E
Sbjct: 169 AGKVE 173
>AT3G08940.1 | Symbols: LHCB4.2 | light harvesting complex
photosystem II | chr3:2717717-2718400 FORWARD LENGTH=227
Length = 227
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 52/123 (42%), Gaps = 49/123 (39%)
Query: 63 DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNV------------------- 103
DRPLWFPG+ P +LDGSL GD+GFDP GL E L++++
Sbjct: 51 DRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTR 110
Query: 104 ------------------------QAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYT 139
+ EL+H RWAML G E+LT + +W
Sbjct: 111 TEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGV------TWQD 164
Query: 140 AGE 142
AG+
Sbjct: 165 AGK 167