Miyakogusa Predicted Gene

Lj3g3v2517860.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2517860.2 Non Chatacterized Hit- tr|A5BUV6|A5BUV6_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,36.97,2e-18,SUBFAMILY NOT NAMED,NULL; BED FINGER-RELATED,NULL;
C2H2 and C2HC zinc fingers,NULL; Hermes dimerisat,CUFF.44128.2
         (239 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G42170.1 | Symbols:  | BED zinc finger ;hAT family dimerisati...    55   4e-08

>AT3G42170.1 | Symbols:  | BED zinc finger ;hAT family dimerisation
           domain | chr3:14321838-14323928 FORWARD LENGTH=696
          Length = 696

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 15/195 (7%)

Query: 57  KTRKSIVWDHFTKLPLVETKGEHKAKCNHC-CAIDSCHPNK-HGTNSLNKHLRRS--HQW 112
           + +KS+VW+HFT +  VE     +A C  C  +    + NK  GT+ L +H+ +      
Sbjct: 64  RKKKSMVWEHFT-IEAVEPNC-RRAFCKGCNQSFAYSNGNKVAGTSHLKRHIFKGTCPAL 121

Query: 113 IFSKVGNKGTLHG--YMPKIS------EDGLGGTNSVGYNLEDCRRVLAEFVICDEMSFK 164
           I +   +   L    Y PK              +  V +N + CR+ +A+ +I  +    
Sbjct: 122 IHTHDNDNNPLMSTPYTPKTDTPRRRYRSQNNASPYVAFNQDKCRQEIAKMIIMHDYPLH 181

Query: 165 VVEGRGFCKMINRLEPRFTVPSRVTVARDCYQHFLDEKKKLKSWFINSRIRVCTTTDCWT 224
           +V+  GF   +  ++P F   S   V  DC   +L EK+ +         R C T D WT
Sbjct: 182 MVQHPGFVSFVQSIQPHFDAVSFNNVQGDCVATYLAEKQNVMKSLEGIPGRFCLTLDFWT 241

Query: 225 SCQNFILYVFNCSFY 239
           S +  + YVF  + Y
Sbjct: 242 S-KLTLGYVFITAHY 255