Miyakogusa Predicted Gene
- Lj3g3v2517590.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2517590.1 tr|Q8W214|Q8W214_SOLTU Single-stranded DNA
binding protein (Precursor) OS=Solanum tuberosum PE=2
SV=,33.7,7e-19,seg,NULL; RNA-binding domain, RBD,NULL; RNA recognition
motif,RNA recognition motif domain; RRM_1,RN,CUFF.44112.1
(290 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 242 3e-64
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 237 5e-63
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 106 1e-23
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 99 3e-21
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 92 3e-19
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 92 3e-19
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 91 9e-19
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 88 5e-18
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 88 7e-18
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 86 3e-17
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 77 1e-14
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 75 6e-14
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 71 7e-13
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 70 2e-12
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 70 2e-12
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 1e-11
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 1e-11
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 67 2e-11
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 67 2e-11
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 66 3e-11
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 66 4e-11
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 66 4e-11
AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 4e-11
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 5e-11
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 5e-11
AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 7e-11
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 64 1e-10
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 2e-10
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 2e-10
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 2e-10
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 2e-10
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 3e-10
AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like... 62 4e-10
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 5e-10
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 62 6e-10
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 62 6e-10
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 8e-10
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 61 1e-09
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 1e-09
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 1e-09
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 60 1e-09
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 59 3e-09
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 59 3e-09
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like ... 59 3e-09
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 59 4e-09
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 58 6e-09
AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large subu... 58 9e-09
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 57 1e-08
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 57 1e-08
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 57 2e-08
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 2e-08
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 2e-08
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 2e-08
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 2e-08
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 3e-08
AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 56 3e-08
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 55 4e-08
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 55 4e-08
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 55 4e-08
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 55 4e-08
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 5e-08
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 55 5e-08
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 54 9e-08
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 54 1e-07
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 54 2e-07
AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 53 2e-07
AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 53 2e-07
AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 2e-07
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 52 4e-07
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 52 4e-07
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 52 5e-07
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 5e-07
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 52 6e-07
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 52 6e-07
AT5G18810.1 | Symbols: SCL28, At-SCL28 | SC35-like splicing fact... 52 6e-07
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindin... 52 7e-07
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 8e-07
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 8e-07
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 51 9e-07
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 51 1e-06
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 51 1e-06
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 51 1e-06
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT1G16610.3 | Symbols: SR45 | arginine/serine-rich 45 | chr1:567... 50 2e-06
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 50 2e-06
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 49 3e-06
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 49 3e-06
AT5G07290.1 | Symbols: AML4, ML4 | MEI2-like 4 | chr5:2294248-22... 49 3e-06
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 49 3e-06
AT1G16610.2 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 | c... 49 3e-06
AT1G16610.1 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 | c... 49 3e-06
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 4e-06
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 49 4e-06
AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 49 5e-06
AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 49 5e-06
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 8e-06
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 48 8e-06
AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 48 9e-06
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 242 bits (617), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 112/189 (59%), Positives = 148/189 (78%), Gaps = 3/189 (1%)
Query: 101 PCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAI 160
PCE+YVCN+PRS + A LLD+F+P+GT+ISVEVSRN +TGESRG GYV M SINSAK AI
Sbjct: 107 PCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAI 166
Query: 161 AALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVV 220
A+LDG++VGGRE+RV++SV+M+ N + ++PK+ YE+ HK+YVGNL
Sbjct: 167 ASLDGTEVGGREMRVRYSVDMN---PGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFT 223
Query: 221 KPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTIV 280
+P+ LRNHF +FG ++S RVLHDRK G+ RV+AFLSF S ERDAA+S NGT++ GR I+
Sbjct: 224 QPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRII 283
Query: 281 VREGAQRTE 289
VREG +++E
Sbjct: 284 VREGIEKSE 292
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 237 bits (605), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 112/190 (58%), Positives = 148/190 (77%), Gaps = 4/190 (2%)
Query: 101 PCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEV-SRNAETGESRGCGYVIMESINSAKSA 159
PCE+YVCN+PRS + A LLD+F+P+GT+ISVEV SRN +TGESRG GYV M SINSAK A
Sbjct: 107 PCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIA 166
Query: 160 IAALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARV 219
IA+LDG++VGGRE+RV++SV+M+ N + ++PK+ YE+ HK+YVGNL
Sbjct: 167 IASLDGTEVGGREMRVRYSVDMN---PGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWF 223
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTI 279
+P+ LRNHF +FG ++S RVLHDRK G+ RV+AFLSF S ERDAA+S NGT++ GR I
Sbjct: 224 TQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRI 283
Query: 280 VVREGAQRTE 289
+VREG +++E
Sbjct: 284 IVREGIEKSE 293
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NLP + ++ L +F GT++ V++ + T SRG G+V M SI AK A+
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 164 DGSDVGGRELRVKF-----SVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLAR 218
+ S +GGR ++V F E + RT N R+ Y ++PHK+Y GNL
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDN--------NRS-YVDSPHKVYAGNLGW 228
Query: 219 VVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFES-EAERDAAMSLNGTEFYGR 277
+ + L++ F VL +V+++R G++R + F+SFES E + A ++NG E GR
Sbjct: 229 NLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGR 288
Query: 278 TIVVREGAQRTEP 290
+ + ++R +P
Sbjct: 289 ALRLNLASEREKP 301
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 101 PCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAI 160
P ++Y NL + + L D F ++ +V TG SRG G++ ES + +SA+
Sbjct: 218 PHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSAL 277
Query: 161 AALDGSDVGGRELRVKFSVE 180
A ++G +V GR LR+ + E
Sbjct: 278 ATMNGVEVEGRALRLNLASE 297
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 16/180 (8%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
++Y NLP + ++A L + + + VEV N +TG+SRG +V M ++ I
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 163 LDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKP 222
LDG++ GR L+V F+ ++ N K Y E HKL+VGNL+ V
Sbjct: 146 LDGTEYLGRALKVNFA-----DKPKPN----------KEPLYPETEHKLFVGNLSWTVTS 190
Query: 223 EQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNGTEFYGRTIVV 281
E L F G+V+ RV+ D G++R Y F+ + S+AE + A+ SL+G E GR I V
Sbjct: 191 ESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRV 250
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 96/182 (52%), Gaps = 7/182 (3%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+Y+ N+PR+ L L + +G + V+V + +G SR G+ M+S+ A + + L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+G+ V GRE++V + + D + E A + ++P+K+YVGNLA+ V E
Sbjct: 138 NGNTVEGREIKVNITEKPIASSPDLSVLQSEDSA------FVDSPYKVYVGNLAKTVTKE 191
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNGTEFYGRTIVVR 282
L N F G V+S +V K+ + F++F SE + +AA+ +LN + G+ I V
Sbjct: 192 MLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVN 251
Query: 283 EG 284
+
Sbjct: 252 KA 253
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 101 PCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAI 160
P ++YV NL ++ L +LF G ++S +VSR T +S G G+V S ++AI
Sbjct: 176 PYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAI 235
Query: 161 AALDGSDVGGRELRV 175
AL+ S + G+++RV
Sbjct: 236 VALNNSLLEGQKIRV 250
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 206 EAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDA 265
EA ++Y+GN+ R V EQL G V V+V++D+ G++R + F + +S + +A
Sbjct: 73 EAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANA 132
Query: 266 AM-SLNGTEFYGRTIVV 281
+ LNG GR I V
Sbjct: 133 VVEKLNGNTVEGREIKV 149
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 96/182 (52%), Gaps = 7/182 (3%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+Y+ N+PR+ L L + +G + V+V + +G SR G+ M+S+ A + + L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+G+ V GRE++V + + D + E A + ++P+K+YVGNLA+ V E
Sbjct: 138 NGNTVEGREIKVNITEKPIASSPDLSVLQSEDSA------FVDSPYKVYVGNLAKTVTKE 191
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNGTEFYGRTIVVR 282
L N F G V+S +V K+ + F++F SE + +AA+ +LN + G+ I V
Sbjct: 192 MLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVN 251
Query: 283 EG 284
+
Sbjct: 252 KA 253
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 101 PCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAI 160
P ++YV NL ++ L +LF G ++S +VSR T +S G G+V S ++AI
Sbjct: 176 PYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAI 235
Query: 161 AALDGSDVGGRELRV 175
AL+ S + G+++RV
Sbjct: 236 VALNNSLLEGQKIRV 250
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 206 EAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDA 265
EA ++Y+GN+ R V EQL G V V+V++D+ G++R + F + +S + +A
Sbjct: 73 EAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANA 132
Query: 266 AM-SLNGTEFYGRTIVV 281
+ LNG GR I V
Sbjct: 133 VVEKLNGNTVEGREIKV 149
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 94/189 (49%), Gaps = 16/189 (8%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
+++V NLP ++ L LF+ GT+ EV N +T +SRG G+V M ++ A+ A+
Sbjct: 113 AKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 172
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRT-FYYEAPHKLYVGNLARVV 220
+ +V GR L V A + P+R Y+A ++YVGNL V
Sbjct: 173 KFNSFEVNGRRLTVN--------------RAAPRGSRPERQPRVYDAAFRIYVGNLPWDV 218
Query: 221 KPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNGTEFYGRTI 279
+L F G V+ RV+ DR+ G++R + F+ +E E + A+ +L+G GR I
Sbjct: 219 DSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAI 278
Query: 280 VVREGAQRT 288
V +RT
Sbjct: 279 KVNVAEERT 287
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 93/188 (49%), Gaps = 16/188 (8%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
+++V NL N+ L LF+ GT+ EV N ET +SRG G+V M S++ A++A+
Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRT-FYYEAPHKLYVGNLARVV 220
+ D+ GR L V A + P+R YE ++YVGNL V
Sbjct: 210 KFNRYDLNGRLLTVN--------------KAAPRGSRPERAPRVYEPAFRVYVGNLPWDV 255
Query: 221 KPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNGTEFYGRTI 279
+L F G V+ RV++DR+ G++R + F++ E + A+S L+G GR I
Sbjct: 256 DNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAI 315
Query: 280 VVREGAQR 287
V +R
Sbjct: 316 RVNVAEER 323
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 99/193 (51%), Gaps = 7/193 (3%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
+++V NLP + ++A L LF+ G + VEV + TG SRG G+V M S++ ++A
Sbjct: 91 LKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQ 150
Query: 162 ALDGSDVGGRELRVKFS-----VEMSLERT-DANANAGEMYASPKRTFYYEAPHKLYVGN 215
+G ++ GR LRV E R ++ + + +++YVGN
Sbjct: 151 QFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGN 210
Query: 216 LARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAE-RDAAMSLNGTEF 274
L+ V L + F G V+ RV++DR G+++ + F++++S E ++A SL+G +
Sbjct: 211 LSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADL 270
Query: 275 YGRTIVVREGAQR 287
GR I V E R
Sbjct: 271 DGRQIRVSEAEAR 283
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 198 SPKRTFYYEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSF 257
+P + + A KL+VGNL V QL F GNV V V++D+ G++R + F++
Sbjct: 80 APPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTM 139
Query: 258 ESEAERD-AAMSLNGTEFYGRTIVVREG 284
S +E + AA NG E GR + V G
Sbjct: 140 SSVSEVEAAAQQFNGYELDGRPLRVNAG 167
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 100/192 (52%), Gaps = 22/192 (11%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G ++V NLP S A L D+FK +G I+S +V+ E G+SRG G+V E ++A +A
Sbjct: 110 GVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAA 168
Query: 160 IAALDGSDVGGRELRV-KFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLAR 218
I L+ + V +E+ V KF +++TD R E LY+ NL
Sbjct: 169 IQTLNSTIVADKEIYVGKF-----MKKTD-------------RVKPEEKYTNLYMKNLDA 210
Query: 219 VVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFES-EAERDAAMSLNGTEFYGR 277
V + LR F FG ++S+ + D + R YAF++F++ E R AA ++NGT+F +
Sbjct: 211 DVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETVNGTKFGSK 269
Query: 278 TIVVREGAQRTE 289
+ V ++ E
Sbjct: 270 CLYVGRAQKKAE 281
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 25/189 (13%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV +L S L D F + ++ SV + ++A +G S GY S A AI
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+ S + G+ +RV +SV R + N ++V NL V
Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARRNGVGN-------------------VFVKNLPESVTNA 126
Query: 224 QLRNHFIRFGNVLSVRV--LHDRKQGKARVYAFLSFESEAERDAAM-SLNGTEFYGRTIV 280
L++ F +FGN++S +V L D GK+R Y F+ FE E AA+ +LN T + I
Sbjct: 127 VLQDMFKKFGNIVSCKVATLED---GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIY 183
Query: 281 VREGAQRTE 289
V + ++T+
Sbjct: 184 VGKFMKKTD 192
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 85/179 (47%), Gaps = 6/179 (3%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+Y+ NL + L + F +G I+S+ ++++ E RG +V ++ A+ A +
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETV 261
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+G+ G + L V + + + E + K +YV N+ V E
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMI---AKVSNIYVKNVNVAVTEE 318
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFES-EAERDAAMSLNGTEFYGRTIVV 281
+LR HF + G + S +++ D K GK++ + F+ F + E DA + +G F+G+ + V
Sbjct: 319 ELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYV 376
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 91/188 (48%), Gaps = 22/188 (11%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
+++V NLP S + + +LF GT+ +VE+ R + G++RG +V M S A++AI
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMASGEEAQAAIDK 154
Query: 163 LDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAP------HKLYVGNL 216
D V GR + V F+ +PK +P HKLYV NL
Sbjct: 155 FDTFQVSGRIISVSFARRFK-------------KPTPKSPNDLPSPAPGDTRHKLYVSNL 201
Query: 217 ARVVKPEQLRNHFIRFG-NVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNGTEF 274
A + LR F N +S RV+ +G++ Y F+SF + E + A++ LNG E
Sbjct: 202 AWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEI 261
Query: 275 YGRTIVVR 282
GR I ++
Sbjct: 262 MGRPITLK 269
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 16/191 (8%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G I++ NL S + L + F +GTI+S +V+ + TG S+G G+V E SA++A
Sbjct: 134 GKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAA 192
Query: 160 IAALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARV 219
I L+G + +++ V + D N +P+ T +YV NL +
Sbjct: 193 IDKLNGMLMNDKQVFVGHFIRRQERARDENT------PTPRFT-------NVYVKNLPKE 239
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFE-SEAERDAAMSLNGTEFYGRT 278
+ ++LR F +FG + S V+ D + G +R + F++FE +EA A +NG
Sbjct: 240 IGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDV 298
Query: 279 IVVREGAQRTE 289
+ V +++E
Sbjct: 299 LYVGRAQKKSE 309
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 9/188 (4%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NLP+ L F +G I S V R+ ++G SR G+V E +A SA+ +
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPH--KLYVGNLARVVK 221
+G +G L V + + S ER + E +R +E LY+ NL V
Sbjct: 290 NGISLGDDVLYVGRAQKKS-EREEELRRKFEQ----ERINRFEKSQGANLYLKNLDDSVD 344
Query: 222 PEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTIVV 281
E+L+ F +GNV S +V+ + QG +R + F+++ + E A+S + GR +
Sbjct: 345 DEKLKEMFSEYGNVTSSKVMLN-PQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLY 403
Query: 282 REGAQRTE 289
AQR E
Sbjct: 404 IALAQRKE 411
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 79/187 (42%), Gaps = 22/187 (11%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+Y +L AHL DLFK ++SV V R+ + S G Y+ + N A A+ AL
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+ + + R +R+ S R N +++ NL + +
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTRLSGKGN-------------------IFIKNLDASIDNK 150
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNGTEFYGRTIVVR 282
L F FG +LS +V D G+++ Y F+ FE E AA+ LNG + + V
Sbjct: 151 ALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVG 209
Query: 283 EGAQRTE 289
+R E
Sbjct: 210 HFIRRQE 216
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 98/192 (51%), Gaps = 21/192 (10%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G +YV NL S ++ L +F P+G+I+S +V E G+S+G G+V ++ SA SA
Sbjct: 110 GFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVE--ENGQSKGFGFVQFDTEQSAVSA 167
Query: 160 IAALDGSDVGGRELRV-KFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLAR 218
+AL GS V G++L V KF + + + A AG ++ +YV NL
Sbjct: 168 RSALHGSMVYGKKLFVAKF-----INKDERAAMAGNQDST-----------NVYVKNLIE 211
Query: 219 VVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSF-ESEAERDAAMSLNGTEFYGR 277
V + L F ++G V SV V+ D G++R + F++F E + A SL G + +
Sbjct: 212 TVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSK 270
Query: 278 TIVVREGAQRTE 289
+ V + ++ E
Sbjct: 271 KLFVGKALKKDE 282
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV +L L+D F ++SV + RN+ TG+S Y+ +S SA +A+ L
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+ SD+ G+ +R+ +S +R A Y RT + LYV NL +
Sbjct: 83 NHSDLKGKAMRIMWS-----QRDLA-------YRRRTRTGF----ANLYVKNLDSSITSS 126
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNGTEFYGRTIVV 281
L F FG++LS +V+ + Q K + F+ F++E +A S L+G+ YG+ + V
Sbjct: 127 CLERMFCPFGSILSCKVVEENGQSKG--FGFVQFDTEQSAVSARSALHGSMVYGKKLFV 183
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 12/189 (6%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NL + L LF YGT+ SV V R+ G SRG G+V + +AK A+ +L
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDG-MGRSRGFGFVNFCNPENAKKAMESL 262
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMY-ASPKRTFYYEAPHKLYVGNLARVVKP 222
G +G ++L V +++ R + + A P + LYV NL+ +
Sbjct: 263 CGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRW-----SNLYVKNLSESMNE 317
Query: 223 EQLRNHFIRFGNVLSVRVL-HDRKQGKARVYAFLSFES-EAERDAAMSLNGTEFYGRTIV 280
+LR F +G ++S +V+ H+ G+++ + F+ F + E + A LNG G+ IV
Sbjct: 318 TRLREIFGCYGQIVSAKVMCHE--NGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIV 375
Query: 281 VREGAQRTE 289
VR A+R E
Sbjct: 376 VRV-AERKE 383
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 9/179 (5%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NL S + L +F +G S + R+ E G+S+G G+V E+ + A A+ AL
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDAL 284
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+G +E V + + S T+ + S K LYV NL V +
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQ---KFEQSLKEAADKSQGSNLYVKNLDESVTDD 341
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTIVVR 282
+LR HF FG + S +V+ D G +R F++F + E A+ TE G+ IV +
Sbjct: 342 KLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAI----TEMNGKMIVTK 395
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 21/183 (11%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G +YV +L + + L + F G ++SV V R+ T S G GYV + A A
Sbjct: 43 GTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRA 102
Query: 160 IAALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARV 219
+ L+ + GR +RV +SV R N +++ NL +
Sbjct: 103 LNELNFMALNGRAIRVMYSVRDPSLRKSGVGN-------------------IFIKNLDKS 143
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFES-EAERDAAMSLNGTEFYGRT 278
+ + L F FG +LS +V D G+++ Y F+ +++ EA + A LNG +
Sbjct: 144 IDHKALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQ 202
Query: 279 IVV 281
+ V
Sbjct: 203 VYV 205
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 97/191 (50%), Gaps = 18/191 (9%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G I++ NL +S + L + F +G I+S +V+ + +G+S+G G+V ++ +A+ A
Sbjct: 131 GVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGA 189
Query: 160 IAALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARV 219
I L+G + +++ V V L+R +GE K F +YV NL+
Sbjct: 190 IDKLNGMLLNDKQVYVGPFVH-KLQRDP----SGE-----KVKF-----TNVYVKNLSES 234
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFE-SEAERDAAMSLNGTEFYGRT 278
+ E+L F FG S ++ D +GK++ + F++FE S+ A +LNG F +
Sbjct: 235 LSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKE 293
Query: 279 IVVREGAQRTE 289
V + +++E
Sbjct: 294 WFVGKAQKKSE 304
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 9/179 (5%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NL S + L +F +G S + R+ E G+S+G G+V E+ + A A+ AL
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDAL 284
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+G +E V + + S T+ + S K LYV NL V +
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQ---KFEQSLKEAADKSQGSNLYVKNLDESVTDD 341
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTIVVR 282
+LR HF FG + S +V+ D G +R F++F + E A+ TE G+ IV +
Sbjct: 342 KLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAI----TEMNGKMIVTK 395
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 21/183 (11%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G +YV +L + + L + F G ++SV V R+ T S G GYV + A A
Sbjct: 43 GTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRA 102
Query: 160 IAALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARV 219
+ L+ + GR +RV +SV R N +++ NL +
Sbjct: 103 LNELNFMALNGRAIRVMYSVRDPSLRKSGVGN-------------------IFIKNLDKS 143
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFES-EAERDAAMSLNGTEFYGRT 278
+ + L F FG +LS +V D G+++ Y F+ +++ EA + A LNG +
Sbjct: 144 IDHKALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQ 202
Query: 279 IVV 281
+ V
Sbjct: 203 VYV 205
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 97/191 (50%), Gaps = 18/191 (9%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G I++ NL +S + L + F +G I+S +V+ + +G+S+G G+V ++ +A+ A
Sbjct: 131 GVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGA 189
Query: 160 IAALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARV 219
I L+G + +++ V V L+R +GE K F +YV NL+
Sbjct: 190 IDKLNGMLLNDKQVYVGPFVH-KLQRDP----SGE-----KVKF-----TNVYVKNLSES 234
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFE-SEAERDAAMSLNGTEFYGRT 278
+ E+L F FG S ++ D +GK++ + F++FE S+ A +LNG F +
Sbjct: 235 LSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKE 293
Query: 279 IVVREGAQRTE 289
V + +++E
Sbjct: 294 WFVGKAQKKSE 304
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 86/172 (50%), Gaps = 21/172 (12%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+++ +L + +L F G ++SV+V RN TG+ G G++ S +A+ +
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 164 DGSDVGGREL--RVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
+G+ + G EL R+ ++ S ++ DA + H ++VG+LA V
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKVDAGPD-----------------HSIFVGDLAPDVT 128
Query: 222 PEQLRNHF-IRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNG 271
L+ F + + +V +V+ D G+++ Y F+ F E+ER+ AM+ +NG
Sbjct: 129 DYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNG 180
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 86/172 (50%), Gaps = 21/172 (12%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+++ +L + +L F G ++SV+V RN TG+ G G++ S +A+ +
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 164 DGSDVGGREL--RVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
+G+ + G EL R+ ++ S ++ DA + H ++VG+LA V
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKVDAGPD-----------------HSIFVGDLAPDVT 128
Query: 222 PEQLRNHF-IRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNG 271
L+ F + + +V +V+ D G+++ Y F+ F E+ER+ AM+ +NG
Sbjct: 129 DYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNG 180
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+++ +L + + +++ +F G S +V RN TG+S G G++ S + A+ +
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTY 121
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAP-HKLYVGNLARVVKP 222
+G+ + S E + A A AGE + F E P H ++VG+LA V
Sbjct: 122 NGAPM--------PSTEQTFRLNWAQAGAGE------KRFQTEGPDHTIFVGDLAPEVTD 167
Query: 223 EQLRNHFIR-FGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNG 271
L + F +G+V +V+ DR G+++ Y F+ F E E+ AM+ +NG
Sbjct: 168 YMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNG 218
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 90/190 (47%), Gaps = 24/190 (12%)
Query: 104 IYVCNLPRSCNAAHLLDLFKP-YGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
I+V +L L D FK YG++ +V + TG S+G G+V N A+
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 163 LDGSDVGGRELRV-------KFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGN 215
++G R +R+ ++ ++ + ANAG+ P T ++VG
Sbjct: 216 MNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGD--NDPNNT-------TIFVGG 266
Query: 216 LARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNGTEF 274
L V ++L++ F +FG +L V++ ++ G F+ + ++A + A+S LNGT+
Sbjct: 267 LDANVTDDELKSIFGQFGELLHVKIPPGKRCG------FVQYANKASAEHALSVLNGTQL 320
Query: 275 YGRTIVVREG 284
G++I + G
Sbjct: 321 GGQSIRLSWG 330
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 66.6 bits (161), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 206 EAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESE-AERD 264
E ++ +VG LA E L+ F +FG+V+ ++++DR+ G++R + F++F+ E A RD
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 265 AAMSLNGTEFYGRTIVVREGAQR 287
A +NG E GR I V E R
Sbjct: 63 AIEEMNGKELDGRVITVNEAQSR 85
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 21/181 (11%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
C +YV +L + + L D F ++SV V R+A T S G GYV + + A+ A+
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
L+ S + G+ +R+ +S S R N L+V NL + V
Sbjct: 106 KLNYSYLNGKMIRITYSSRDSSARRSGVGN-------------------LFVKNLDKSVD 146
Query: 222 PEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESE-AERDAAMSLNGTEFYGRTIV 280
+ L F G ++S +V D G++R Y F+ F++E + ++A LNG + I
Sbjct: 147 NKTLHEAFSGCGTIVSCKVATDH-MGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIF 205
Query: 281 V 281
V
Sbjct: 206 V 206
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 21/194 (10%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NL + L F YG+I S V R+ + G+SR G+V E+ A A+ AL
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEAL 285
Query: 164 DGSD-------VGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNL 216
+G VG + + + +E+S +++ G + LYV NL
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDG----------LNLYVKNL 335
Query: 217 ARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNGTEFY 275
V E+LR F FG + S +V+ D G ++ F++F + +E ++ +NG
Sbjct: 336 DDTVTDEKLRELFAEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRVLNEMNGKMVG 394
Query: 276 GRTIVVREGAQRTE 289
G+ + V AQR E
Sbjct: 395 GKPLYVAL-AQRKE 407
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 206 EAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESE-AERD 264
E ++ +VG LA E L+ F +FG+V+ ++++DR+ G++R + F++F+ E A RD
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 265 AAMSLNGTEFYGRTIVVRE 283
A +NG E GR I V E
Sbjct: 63 AIEEMNGKELDGRVITVNE 81
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 206 EAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESE-AERD 264
E ++ +VG LA E L+ F +FG+V+ ++++DR+ G++R + F++F+ E A RD
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 265 AAMSLNGTEFYGRTIVVRE 283
A +NG E GR I V E
Sbjct: 63 AIEEMNGKELDGRVITVNE 81
>AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797315 REVERSE LENGTH=304
Length = 304
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 14/181 (7%)
Query: 108 NLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAALDGSD 167
N+P + + LF+ YG++I +E+S + + +RG ++ M S A +A+ +L+ +
Sbjct: 100 NVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKE-RNRGLVFIEMASPEEAATALKSLESCE 158
Query: 168 VGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPEQLRN 227
GR L+V D + +P+ T L+V NLA + + L+
Sbjct: 159 YEGRRLKV-----------DYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKE 207
Query: 228 HF-IRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNGTEFYGRTIVVREGA 285
F GNV+S V+ ++ Y F+SF+++ + +AA+ G +F GR I + +
Sbjct: 208 FFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSK 267
Query: 286 Q 286
Q
Sbjct: 268 Q 268
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 85/181 (46%), Gaps = 7/181 (3%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
C++++ + + L D F +G ++ + ++ TG +RG G+V+ N A+ +
Sbjct: 6 CKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV- 64
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
L + G+ + K +V + N + + SP + K++VG LA V
Sbjct: 65 -LLKHIIDGKIVEAKKAVPRD-DHVVFNKSNSSLQGSPGPS----NSKKIFVGGLASSVT 118
Query: 222 PEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTIVV 281
+ + +F +FG + V V++D + + R + F+S++SE D + E G+ + V
Sbjct: 119 EAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEV 178
Query: 282 R 282
+
Sbjct: 179 K 179
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 85/181 (46%), Gaps = 7/181 (3%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
C++++ + + L D F +G ++ + ++ TG +RG G+V+ N A+ +
Sbjct: 6 CKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV- 64
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
L + G+ + K +V + N + + SP + K++VG LA V
Sbjct: 65 -LLKHIIDGKIVEAKKAVPRD-DHVVFNKSNSSLQGSPGPS----NSKKIFVGGLASSVT 118
Query: 222 PEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTIVV 281
+ + +F +FG + V V++D + + R + F+S++SE D + E G+ + V
Sbjct: 119 EAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEV 178
Query: 282 R 282
+
Sbjct: 179 K 179
>AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797193 REVERSE LENGTH=244
Length = 244
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 14/181 (7%)
Query: 108 NLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAALDGSD 167
N+P + + LF+ YG++I +E+S + + +RG ++ M S A +A+ +L+ +
Sbjct: 40 NVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKE-RNRGLVFIEMASPEEAATALKSLESCE 98
Query: 168 VGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPEQLRN 227
GR L+V D + +P+ T L+V NLA + + L+
Sbjct: 99 YEGRRLKV-----------DYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKE 147
Query: 228 HF-IRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNGTEFYGRTIVVREGA 285
F GNV+S V+ ++ Y F+SF+++ + +AA+ G +F GR I + +
Sbjct: 148 FFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSK 207
Query: 286 Q 286
Q
Sbjct: 208 Q 208
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 7/187 (3%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NL S L + F YG I S V ++ E G+S+G G+V E+ + A A+ +L
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 275
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+G +E V + + S T+ + F LYV NL + E
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKF---QSSNLYVKNLDPSISDE 332
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNGTEFYGRTIVVR 282
+L+ F FG V S +V+ D G ++ F++F + E AMS L+G + + V
Sbjct: 333 KLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVA 391
Query: 283 EGAQRTE 289
AQR E
Sbjct: 392 I-AQRKE 397
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G +YV +L + + L D F GT+++V V R+ T S G GYV + A A
Sbjct: 34 GNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 93
Query: 160 IAALDGSDVGGRELRVKFS-VEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLAR 218
I L+ + G+ +RV +S + S+ R+ A +++ NL
Sbjct: 94 IQELNYIPLYGKPIRVMYSHRDPSVRRSGAG--------------------NIFIKNLDE 133
Query: 219 VVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNGTEFYGR 277
+ + L + F FGN++S +V D G+++ Y F+ + +E A+ LNG +
Sbjct: 134 SIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDK 192
Query: 278 TIVVREGAQRTE 289
+ V +R E
Sbjct: 193 QVYVGPFLRRQE 204
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 87/185 (47%), Gaps = 13/185 (7%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
++++ + + L D F YG ++ + R+ TG +RG G+++ ++ I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 163 LDGSDVGGRELRVKFSV----EMSLERTDANAN-AGEMYASPKRTFYYEAPHKLYVGNLA 217
+D + GR + K +V + L+R + + ++ RT K++VG L
Sbjct: 65 MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRT------KKIFVGGLP 118
Query: 218 RVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGR 277
+ E+ +N+F +FG + V V++D + R + F++F+S+ D + E G+
Sbjct: 119 SSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGK 178
Query: 278 TIVVR 282
+ V+
Sbjct: 179 LVEVK 183
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 87/185 (47%), Gaps = 13/185 (7%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
++++ + + L D F YG ++ + R+ TG +RG G+++ ++ I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 163 LDGSDVGGRELRVKFSV----EMSLERTDANAN-AGEMYASPKRTFYYEAPHKLYVGNLA 217
+D + GR + K +V + L+R + + ++ RT K++VG L
Sbjct: 65 MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRT------KKIFVGGLP 118
Query: 218 RVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGR 277
+ E+ +N+F +FG + V V++D + R + F++F+S+ D + E G+
Sbjct: 119 SSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGK 178
Query: 278 TIVVR 282
+ V+
Sbjct: 179 LVEVK 183
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 87/185 (47%), Gaps = 13/185 (7%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
++++ + + L D F YG ++ + R+ TG +RG G+++ ++ I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 163 LDGSDVGGRELRVKFSV----EMSLERTDANAN-AGEMYASPKRTFYYEAPHKLYVGNLA 217
+D + GR + K +V + L+R + + ++ RT K++VG L
Sbjct: 65 MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRT------KKIFVGGLP 118
Query: 218 RVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGR 277
+ E+ +N+F +FG + V V++D + R + F++F+S+ D + E G+
Sbjct: 119 SSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGK 178
Query: 278 TIVVR 282
+ V+
Sbjct: 179 LVEVK 183
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 87/185 (47%), Gaps = 13/185 (7%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
++++ + + L D F YG ++ + R+ TG +RG G+++ ++ I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 163 LDGSDVGGRELRVKFSV----EMSLERTDANAN-AGEMYASPKRTFYYEAPHKLYVGNLA 217
+D + GR + K +V + L+R + + ++ RT K++VG L
Sbjct: 65 MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRT------KKIFVGGLP 118
Query: 218 RVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGR 277
+ E+ +N+F +FG + V V++D + R + F++F+S+ D + E G+
Sbjct: 119 SSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGK 178
Query: 278 TIVVR 282
+ V+
Sbjct: 179 LVEVK 183
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 85/182 (46%), Gaps = 20/182 (10%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
+I+V L R +A L F YG I + ++ +TG+ RG G+V + I
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ- 101
Query: 163 LDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKP 222
D + G+++ +K ++ G M ++ +T K++VG + V
Sbjct: 102 -DNHIIIGKQVEIKRTIPR-----------GSMSSNDFKT------KKIFVGGIPSSVDD 143
Query: 223 EQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSL-NGTEFYGRTIVV 281
++ + F++FG + +++ D G++R + F+++ESE D ++ N E G + +
Sbjct: 144 DEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEI 203
Query: 282 RE 283
++
Sbjct: 204 KK 205
>AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like 2
| chr3:6404270-6407822 REVERSE LENGTH=636
Length = 636
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 10/188 (5%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G ++ NL + + + FK G ++ V +S + + G +G G++ S A+ A
Sbjct: 382 GSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLS-SFDDGSFKGYGHIEFASPEEAQKA 440
Query: 160 IAALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARV 219
+ ++G + GR++R+ + E R GE S RT Y + +L
Sbjct: 441 LE-MNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQS--RTIYVRG----FSSSLGED 493
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTI 279
++LR+HF + G V V V DR+ G +R +A++ S D A+ L+G+E G I
Sbjct: 494 EIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGF--DEALQLSGSEIGGGNI 551
Query: 280 VVREGAQR 287
V E R
Sbjct: 552 HVEESRPR 559
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 5/182 (2%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
+++V + + L + F YG + V R+ TG RG G+VI + +
Sbjct: 6 GKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYAS-PKRTFYYEAPHKLYVGNLARVV 220
D RE+ VK + MS E + G + S Y K++VG L +
Sbjct: 66 EKHSIDT--REVDVKRA--MSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTL 121
Query: 221 KPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTIV 280
E+ R +F +G V V +++D+ + R + F+SF+SE D+ + + G+ +
Sbjct: 122 TDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVE 181
Query: 281 VR 282
V+
Sbjct: 182 VK 183
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 5/186 (2%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NLP+ L F YG I S V ++ ++G SR G+V S +A A+ +
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+G +G L V + + S + + S F LY+ NL V E
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERIS---RFEKLQGSNLYLKNLDDSVNDE 356
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTIVVRE 283
+L+ F +GNV S +V+ + QG +R + F+++ + E AM + GR +
Sbjct: 357 KLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVA 415
Query: 284 GAQRTE 289
AQR E
Sbjct: 416 LAQRKE 421
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 80/187 (42%), Gaps = 22/187 (11%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV +L S N +HLLDLF + ++ V R+ T S G YV + A A+ +L
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESL 119
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+ + + R +R+ S R N +++ NL + +
Sbjct: 120 NYAPIRDRPIRIMLSNRDPSTRLSGKGN-------------------VFIKNLDASIDNK 160
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNGTEFYGRTIVVR 282
L F FG +LS +V D G+++ Y F+ FE E AA+ LNG + + V
Sbjct: 161 ALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVG 219
Query: 283 EGAQRTE 289
+R +
Sbjct: 220 HFVRRQD 226
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 5/186 (2%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NLP+ L F YG I S V ++ ++G SR G+V S +A A+ +
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+G +G L V + + S + + S F LY+ NL V E
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERIS---RFEKLQGSNLYLKNLDDSVNDE 356
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTIVVRE 283
+L+ F +GNV S +V+ + QG +R + F+++ + E AM + GR +
Sbjct: 357 KLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVA 415
Query: 284 GAQRTE 289
AQR E
Sbjct: 416 LAQRKE 421
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 80/187 (42%), Gaps = 22/187 (11%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV +L S N +HLLDLF + ++ V R+ T S G YV + A A+ +L
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESL 119
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+ + + R +R+ S R N +++ NL + +
Sbjct: 120 NYAPIRDRPIRIMLSNRDPSTRLSGKGN-------------------VFIKNLDASIDNK 160
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNGTEFYGRTIVVR 282
L F FG +LS +V D G+++ Y F+ FE E AA+ LNG + + V
Sbjct: 161 ALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVG 219
Query: 283 EGAQRTE 289
+R +
Sbjct: 220 HFVRRQD 226
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 82/183 (44%), Gaps = 4/183 (2%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
++++ + + L + F YG ++ + R+ TG +RG G+++ + A+ I
Sbjct: 15 GKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI- 73
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPH--KLYVGNLARV 219
+D + GR + K +V ++ + SP K++VG L
Sbjct: 74 -MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSS 132
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTI 279
+ + +N+F +FG + V V++D + R + F++F+SE D + E G+ +
Sbjct: 133 ITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMV 192
Query: 280 VVR 282
V+
Sbjct: 193 EVK 195
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 207 APHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSF-ESEAERDA 265
+ KL++G +A + + LR F ++G V+ RV+ DR+ G++R + F++F SEA A
Sbjct: 38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97
Query: 266 AMSLNGTEFYGRTIVVREGAQRT 288
+L+G + +GR + V RT
Sbjct: 98 IQALDGRDLHGRVVKVNYANDRT 120
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 101 PCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAI 160
++++ + S + L + F YG ++ V + ETG SRG G+V S +A SAI
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 161 AALDGSDVGGRELRVKFS 178
ALDG D+ GR ++V ++
Sbjct: 99 QALDGRDLHGRVVKVNYA 116
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 82/183 (44%), Gaps = 4/183 (2%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
++++ + + L + F YG ++ + R+ TG +RG G+++ + A+ I
Sbjct: 12 GKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI- 70
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPH--KLYVGNLARV 219
+D + GR + K +V ++ + SP K++VG L
Sbjct: 71 -MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSS 129
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTI 279
+ + +N+F +FG + V V++D + R + F++F+SE D + E G+ +
Sbjct: 130 ITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMV 189
Query: 280 VVR 282
V+
Sbjct: 190 EVK 192
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 17/168 (10%)
Query: 101 PCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAI 160
P +I++ L + F YG I + R+ TG+ RG G++ + I
Sbjct: 18 PGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI 77
Query: 161 AALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVV 220
D + G+++ +K RT G K K++VG + V
Sbjct: 78 E--DTHVINGKQVEIK--------RTIPKGAGGNQSKDIK-------TKKIFVGGIPSTV 120
Query: 221 KPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS 268
++L++ F ++GNV+ +V+ D + ++R + F+ F+SE D +S
Sbjct: 121 TEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 84/200 (42%), Gaps = 21/200 (10%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
I+V +L A L F Y T V + +TG SRG G+V + A++AI +
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGE-----MYASPKRTFYYEAPHK------LY 212
G +G R++R ++ + + D ++ + K T EAP +Y
Sbjct: 201 TGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGDGKDTTNGEAPENNAQYTTVY 260
Query: 213 VGNLARVVKPEQLRNHFIRFGN--VLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLN 270
VGNLA V L HF G + VRV D+ + F+ + + E A+ +
Sbjct: 261 VGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKG------FGFVRYSTHVEAALAIQMG 314
Query: 271 GTEFY--GRTIVVREGAQRT 288
T Y GR + G++ T
Sbjct: 315 NTHSYLSGRQMKCSWGSKPT 334
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 206 EAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESE-AERD 264
+ ++ +VG LA L F ++G+V+ ++++DR+ G++R + F++F+ E A +D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 265 AAMSLNGTEFYGRTIVVRE 283
A +NG + GR+I V E
Sbjct: 65 AIEGMNGQDLDGRSITVNE 83
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 206 EAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESE-AERD 264
+ ++ +VG LA L F ++G+V+ ++++DR+ G++R + F++F+ E A +D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 265 AAMSLNGTEFYGRTIVVRE 283
A +NG + GR+I V E
Sbjct: 65 AIEGMNGQDLDGRSITVNE 83
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 |
chr1:18098186-18101422 FORWARD LENGTH=557
Length = 557
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 17/185 (9%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
G ++ NL + A + + FK G ++ V S N + G RG G+V S A+ A
Sbjct: 295 GSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKA 354
Query: 160 IAALDGSDVGGRELRVKFSVEMSLERTD--------ANANAGEMYASPKRTFYYEAPHKL 211
+ G + GRE+R+ + E ER + N +G K+ F K
Sbjct: 355 L-EFHGRPLLGREIRLDIAQERG-ERGERPAFTPQSGNFRSGGDGGDEKKIFV-----KG 407
Query: 212 YVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNG 271
+ +L+ LR HF G + +V V DR G ++ A+L F E+ A+ LNG
Sbjct: 408 FDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGKEK--ALELNG 465
Query: 272 TEFYG 276
++ G
Sbjct: 466 SDMGG 470
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 85/203 (41%), Gaps = 24/203 (11%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
I+V +L A L F Y T V + +TG SRG G+V + A++AI +
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGE--------MYASPKRTFYYEAPHK----- 210
G +G R++R ++ + + D ++ + + K T EAP
Sbjct: 201 TGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYT 260
Query: 211 -LYVGNLARVVKPEQLRNHFIRFGN--VLSVRVLHDRKQGKARVYAFLSFESEAERDAAM 267
+YVGNLA V L HF G + VRV D+ + F+ + + E A+
Sbjct: 261 TVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKG------FGFVRYSTHVEAALAI 314
Query: 268 SLNGTEFY--GRTIVVREGAQRT 288
+ T Y GR + G++ T
Sbjct: 315 QMGNTHSYLSGRQMKCSWGSKPT 337
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 83/184 (45%), Gaps = 11/184 (5%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
++++ + N L + F +G +I + ++ TG +RG G+V+ + A + I
Sbjct: 6 GKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF--ADPAVAEIV 63
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPK---RTFYYEAPHKLYVGNLAR 218
+ ++ GR + K +V + +N+ + SP RT K++VG L
Sbjct: 64 ITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRT------RKIFVGGLPS 117
Query: 219 VVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRT 278
V + +F +FG V V++D + R + F++++SE + + E G+
Sbjct: 118 SVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKM 177
Query: 279 IVVR 282
+ V+
Sbjct: 178 VEVK 181
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 17/168 (10%)
Query: 101 PCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAI 160
P +I++ L + F YG I + R+ TG+ RG G++ + I
Sbjct: 18 PGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI 77
Query: 161 AALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVV 220
D + G+++ +K RT G K K++VG + V
Sbjct: 78 E--DTHVINGKQVEIK--------RTIPKGAGGNQSKDIKTK-------KIFVGGIPSTV 120
Query: 221 KPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS 268
++L++ F ++GNV+ +V+ D + ++R + F+ F+SE D +S
Sbjct: 121 TEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 83/184 (45%), Gaps = 11/184 (5%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
++++ + N L + F +G +I + ++ TG +RG G+V+ + A + I
Sbjct: 6 GKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF--ADPAVAEIV 63
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPK---RTFYYEAPHKLYVGNLAR 218
+ ++ GR + K +V + +N+ + SP RT K++VG L
Sbjct: 64 ITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRT------RKIFVGGLPS 117
Query: 219 VVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRT 278
V + +F +FG V V++D + R + F++++SE + + E G+
Sbjct: 118 SVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKM 177
Query: 279 IVVR 282
+ V+
Sbjct: 178 VEVK 181
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 25/196 (12%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
+++V + + + L F YG ++ V++ TG+ RG G+V N A
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFV--RFANDCDVVKAL 64
Query: 163 LDGSDVGGRELRVK------------FSVEMSLERTDANANAG--EMYAS--PKRTFYYE 206
D + G+ + V+ FS++ LER N G EM ++ RT
Sbjct: 65 RDTHFILGKPVDVRKAIRKHELYQQPFSMQF-LERKVQQMNGGLREMSSNGVTSRT---- 119
Query: 207 APHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAA 266
K++VG L+ E+ +++F RFG V V+HD + R + F++++SE +
Sbjct: 120 --KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVV 177
Query: 267 MSLNGTEFYGRTIVVR 282
M N E + + V+
Sbjct: 178 MQSNFHELSDKRVEVK 193
>AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large
subunit, splicing factor | chr1:22424008-22427806
FORWARD LENGTH=589
Length = 589
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 16/198 (8%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSR------NAETGESRGCGYVIMESINSAK 157
+YV LP + N + F + I + N + +V M S+ A
Sbjct: 257 VYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEAS 316
Query: 158 SAIAALDGSDVGGRELRVK--------FSVEMSLERTDANANAGEMYASPKRTFYYEAPH 209
+A+A LDG + G ++V+ + + + + N N G + S T E P
Sbjct: 317 NAMA-LDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGSTGGLEGPD 375
Query: 210 KLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERD-AAMS 268
+++VG L Q+R FG + ++ DR+ G ++ YAF ++ + D A +
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435
Query: 269 LNGTEFYGRTIVVREGAQ 286
LNG + +T+ VR Q
Sbjct: 436 LNGIKMGDKTLTVRRAIQ 453
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 28/205 (13%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
GP I+V LP + +L + +G + + ++ ETG S+G + + + + A
Sbjct: 373 GPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432
Query: 160 IAALDGSDVGGRELRVKFSVEMSL----ERTDANANAGEMYASPKRTFYYEA-PHKLYVG 214
AAL+G +G + L V+ +++ ++ E+ + A + A + F P K+
Sbjct: 433 CAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGGTPTKIVC- 491
Query: 215 NLARVVKPEQLRN-------------HFIRFGNVLSVRV-----LHDRKQGKARVYAFLS 256
L +VV + LR+ +FGN+++V + HD G +V FL
Sbjct: 492 -LTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKV--FLE 548
Query: 257 F-ESEAERDAAMSLNGTEFYGRTIV 280
+ + + A +NG +F G +V
Sbjct: 549 YADVDGSSKARSGMNGRKFGGNQVV 573
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 78/179 (43%), Gaps = 5/179 (2%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NL + A L LF +G I S V ++ E G+SR G+V E +A +AI +
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
+G V +EL V + RT+ E+ R LYV NL V
Sbjct: 180 NGVVVDEKELHVG-RAQRKTNRTEDLKAKFEL-EKIIRDMKTRKGMNLYVKNLDDSVDNT 237
Query: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNGTEFYGRTIVV 281
+L F FG + S +V+ G ++ F+ F + E AM +NG + I V
Sbjct: 238 KLEELFSEFGTITSCKVMV-HSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYV 295
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 207 APHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAA 266
+ K++VG ++ LR F ++G V+ +++ DR+ G++R +AF++F S E A
Sbjct: 32 SSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNA 91
Query: 267 MSLNGTEFYGRTIVV 281
M L+G + +GR I V
Sbjct: 92 MQLDGQDLHGRRIRV 106
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
+I+V + S + L + F YG ++ ++ + ETG SRG +V S A +A+
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM- 92
Query: 162 ALDGSDVGGRELRVKFSVE 180
LDG D+ GR +RV ++ E
Sbjct: 93 QLDGQDLHGRRIRVNYATE 111
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 14/181 (7%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
++ +P + + F G + V + + + S+G GY+ + S AIA L
Sbjct: 170 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 228
Query: 164 DGSDVGGRELRVKFS-VEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKP 222
G G+ + VK S E +L ++++ G P A KLYVGNL +
Sbjct: 229 SGQLFLGQPVMVKPSEAEKNLAQSNSTTVGG---TGP-------ADRKLYVGNLHFNMSE 278
Query: 223 EQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSF-ESEAERDAAMSLNGT-EFYGRTIV 280
QLR F FG V V++ D + G+ + + F+ F + E + A ++LNG E GRTI
Sbjct: 279 LQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIK 338
Query: 281 V 281
V
Sbjct: 339 V 339
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 209 HKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM- 267
++LYVGNL+ V L N F G V+ RV++DR G+++ + F++ S E A+
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 268 SLNGTEFYGRTIVVREGAQR 287
SLNG + GR I V E R
Sbjct: 317 SLNGADLDGRQIRVSEAEAR 336
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NL + L +LF G ++ V + ++G S+G G+V + S + AI +L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 164 DGSDVGGRELRV 175
+G+D+ GR++RV
Sbjct: 319 NGADLDGRQIRV 330
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%)
Query: 76 LNTQNDDVFKNXXXXXXXXXXXXXGPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSR 135
+ DD+F + +++V NL + ++A L LF+ G + VEV
Sbjct: 73 FEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIY 132
Query: 136 NAETGESRGCGYVIMESINSAKSAIAALDGSDVGGRELRV 175
+ TG SRG G+V M + ++A +G + GR LRV
Sbjct: 133 DKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 209 HKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM- 267
++LYVGNL+ V L N F G V+ RV++DR G+++ + F++ S E A+
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 268 SLNGTEFYGRTIVVREGAQR 287
SLNG + GR I V E R
Sbjct: 317 SLNGADLDGRQIRVSEAEAR 336
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NL + L +LF G ++ V + ++G S+G G+V + S + AI +L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 164 DGSDVGGRELRV 175
+G+D+ GR++RV
Sbjct: 319 NGADLDGRQIRV 330
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%)
Query: 76 LNTQNDDVFKNXXXXXXXXXXXXXGPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSR 135
+ DD+F + +++V NL + ++A L LF+ G + VEV
Sbjct: 73 FEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIY 132
Query: 136 NAETGESRGCGYVIMESINSAKSAIAALDGSDVGGRELRV 175
+ TG SRG G+V M + ++A +G + GR LRV
Sbjct: 133 DKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 209 HKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM- 267
++LYVGNL+ V L N F G V+ RV++DR G+++ + F++ S E A+
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 268 SLNGTEFYGRTIVVREGAQR 287
SLNG + GR I V E R
Sbjct: 317 SLNGADLDGRQIRVSEAEAR 336
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NL + L +LF G ++ V + ++G S+G G+V + S + AI +L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 164 DGSDVGGRELRV 175
+G+D+ GR++RV
Sbjct: 319 NGADLDGRQIRV 330
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%)
Query: 76 LNTQNDDVFKNXXXXXXXXXXXXXGPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSR 135
+ DD+F + +++V NL + ++A L LF+ G + VEV
Sbjct: 73 FEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIY 132
Query: 136 NAETGESRGCGYVIMESINSAKSAIAALDGSDVGGRELRV 175
+ TG SRG G+V M + ++A +G + GR LRV
Sbjct: 133 DKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 209 HKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM- 267
++LYVGNL+ V L N F G V+ RV++DR G+++ + F++ S E A+
Sbjct: 278 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 337
Query: 268 SLNGTEFYGRTIVVREGAQR 287
SLNG + GR I V E R
Sbjct: 338 SLNGADLDGRQIRVSEAEAR 357
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NL + L +LF G ++ V + ++G S+G G+V + S + AI +L
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 339
Query: 164 DGSDVGGRELRV 175
+G+D+ GR++RV
Sbjct: 340 NGADLDGRQIRV 351
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 101 PCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAI 160
P +++V + A + F +G ++ + + TG RG G+V +SA +
Sbjct: 65 PGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTF--ADSAVAEK 122
Query: 161 AALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVV 220
+ + R++ +K ++ + TD A S R K++VG L ++
Sbjct: 123 VLEEDHVIDDRKVDLKRTLPRGDKDTDIKA------VSKTR--------KIFVGGLPPLL 168
Query: 221 KPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS 268
+ ++L+N+F +G+++ ++++D G++R + F++F++E D S
Sbjct: 169 EEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFS 216
>AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376710-1379275 REVERSE
LENGTH=439
Length = 439
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 84/173 (48%), Gaps = 27/173 (15%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
+++V +P+ + + LL LF+ + + V + ++ T SRGC +++ S A + A
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 163 LDGSDV---GGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARV 219
L+VK++ + LER + HKL+VG L +
Sbjct: 79 CHNKKTLPGANSLLQVKYA-DGELERLE---------------------HKLFVGMLPKN 116
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNG 271
V ++++ F ++G + +++L +Q ++ AFL +E++ + +AM S+NG
Sbjct: 117 VSEAEVQSLFSKYGTIKDLQILRGAQQ-TSKGCAFLKYETKEQAVSAMESING 168
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 210 KLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS- 268
KL++G L+ LR+ F FG+V+ +V+ DR+ G++R + F++F E AA+S
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 269 LNGTEFYGRTIVV 281
++G E GR I V
Sbjct: 96 MDGKELNGRHIRV 108
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
++++ L + A L D F +G ++ +V + ETG SRG G+V +A +AI+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 163 LDGSDVGGRELRV 175
+DG ++ GR +RV
Sbjct: 96 MDGKELNGRHIRV 108
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 210 KLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS- 268
KL++G L+ LR+ F FG+V+ +V+ DR+ G++R + F++F E AA+S
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 269 LNGTEFYGRTIVV 281
++G E GR I V
Sbjct: 96 MDGKELNGRHIRV 108
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
++++ L + A L D F +G ++ +V + ETG SRG G+V +A +AI+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 163 LDGSDVGGRELRV 175
+DG ++ GR +RV
Sbjct: 96 MDGKELNGRHIRV 108
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 210 KLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS- 268
KL++G L+ LR+ F FG+V+ +V+ DR+ G++R + F++F E AA+S
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 269 LNGTEFYGRTIVV 281
++G E GR I V
Sbjct: 96 MDGKELNGRHIRV 108
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
++++ L + A L D F +G ++ +V + ETG SRG G+V +A +AI+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 163 LDGSDVGGRELRV 175
+DG ++ GR +RV
Sbjct: 96 MDGKELNGRHIRV 108
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 88/176 (50%), Gaps = 33/176 (18%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
+++V +P+ + + LL LF+ + + V + ++ T SRGC +++ S A + A
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 163 ------LDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNL 216
L G++ L+VK++ + LER + HKL+VG L
Sbjct: 79 CHNKKTLPGAN---SLLQVKYA-DGELERLE---------------------HKLFVGML 113
Query: 217 ARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNG 271
+ V ++++ F ++G + +++L +Q ++ AFL +E++ + +AM S+NG
Sbjct: 114 PKNVSEAEVQSLFSKYGTIKDLQILRGAQQ-TSKGCAFLKYETKEQAVSAMESING 168
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 55.5 bits (132), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 210 KLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS- 268
++YVGNL+ + LR F +GNV+ V+ DR ++R + F+++ S +E +AA+S
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 269 LNGTEFYGRTIVVR 282
++G E GR + V+
Sbjct: 64 MDGKELNGRRVSVK 77
Score = 51.2 bits (121), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+YV NL + L + F YG ++ V R+ T SRG G+V S + A++A++ +
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 164 DGSDVGGRELRVKF 177
DG ++ GR + VK
Sbjct: 65 DGKELNGRRVSVKL 78
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 210 KLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS- 268
KL++G L+ LR+ F FG+V+ +V+ DR+ G++R + F++F E AA+S
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 269 LNGTEFYGRTIVV 281
++G E GR I V
Sbjct: 96 MDGKELNGRHIRV 108
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
++++ L + A L D F +G ++ +V + ETG SRG G+V +A +AI+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 163 LDGSDVGGRELRV 175
+DG ++ GR +RV
Sbjct: 96 MDGKELNGRHIRV 108
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 18/171 (10%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+++ +L + +L+++F G + +V RN + G S G G++ E +N A +
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFI--EFVNHATAE---- 135
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAP-HKLYVGNLARVVKP 222
R L+ M N ++ A +R E P H ++VG+LA V
Sbjct: 136 -------RNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQ--AEGPEHTVFVGDLAPDVTD 186
Query: 223 EQLRNHF-IRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNG 271
L F + +V +V++DR G+++ Y F+ F E+E+ AM+ +NG
Sbjct: 187 HMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNG 237
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 22/182 (12%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
+YV L + L +LF G +++V V ++ T + G++ S A AI
Sbjct: 25 ATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIK 84
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
L+ + G+ +RV + D AN L++GNL V
Sbjct: 85 VLNMIKLHGKPIRVN-KASQDKKSLDVGAN-------------------LFIGNLDPDVD 124
Query: 222 PEQLRNHFIRFGNVLS-VRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNGTEFYGRTI 279
+ L + F FG + S +++ D G +R + F+S++S DAA+ S+ G R I
Sbjct: 125 EKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQI 184
Query: 280 VV 281
V
Sbjct: 185 TV 186
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIIS-VEVSRNAETGESRGCGYVIMESINSAKSAI 160
+++ NL + L D F +G I S ++ R+ +TG SRG G++ +S ++ +AI
Sbjct: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171
Query: 161 AALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLY 212
++ G + R++ V ++ + + A + A+ T PH L+
Sbjct: 172 ESMTGQYLSNRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSRPHTLF 223
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 20/203 (9%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
I+V +L A L F + + V + +TG SRG G+V + A++AI +
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYA--------SPKRTFYYEAPHK----- 210
+G + R++R ++ + + D ++ G+ K T E P
Sbjct: 206 NGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFT 265
Query: 211 -LYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSL 269
+YVGNLA PE + R+ + L V+ + + + + + F+ + + E A+ +
Sbjct: 266 TVYVGNLA----PEVTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVRYNTHPEAALAIQM 321
Query: 270 NGTE--FYGRTIVVREGAQRTEP 290
T+ + R I G + T P
Sbjct: 322 GNTQPYLFNRQIKCSWGNKPTPP 344
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 206 EAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESE-AERD 264
E ++ +VG LA E L+ F +FG+V+ ++++DR+ G++R + F++F+ E A RD
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 265 AAMSLN 270
A +N
Sbjct: 63 AIEEMN 68
>AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+ V N+ A L LF YG ++ V + R+ TG+SRG +V + + A A+ L
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 164 DGSDVGGRELRVKFS 178
DG V GRE+ V+F+
Sbjct: 78 DGRVVDGREITVQFA 92
>AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+ V N+ A L LF YG ++ V + R+ TG+SRG +V + + A A+ L
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 164 DGSDVGGRELRVKFS 178
DG V GRE+ V+F+
Sbjct: 78 DGRVVDGREITVQFA 92
>AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16670126-16674189 REVERSE LENGTH=567
Length = 567
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 84/202 (41%), Gaps = 38/202 (18%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
++V NLP +++D FK G ++ V++ N + G+ GCG+V S+N A+ A+
Sbjct: 70 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLK-GKLVGCGFVEFASVNEAEEALQKK 128
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHK------------- 210
+G + ++ + AN Y PK ++ K
Sbjct: 129 NGECLDNNKIFLDV------------ANKKATYLPPKYCIDHKVWDKDYRRLESHPIEED 176
Query: 211 ----------LYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESE 260
L+V NL+ K + + F G V+S+R++ + +GK Y F+ F S
Sbjct: 177 ERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNH-EGKHVGYGFVEFASA 235
Query: 261 AERDAAM-SLNGTEFYGRTIVV 281
E A+ + NG + I +
Sbjct: 236 DETKKALENKNGEYLHDHKIFI 257
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 12/159 (7%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
+I+V L A L+D FK YG I + + +G+S+G G+++ +S + A++A+
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNAL-- 186
Query: 163 LDGSDVGGRELRVKFSVEMSL-ERTDANANAGEMYASPKRTFYYE-APHKLYVGNLARVV 220
++ + K M+ + G +P + F E K+YV N++ +
Sbjct: 187 --------KQPQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADI 238
Query: 221 KPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFES 259
P++L F RFG + + D+ G+ + +A + S
Sbjct: 239 DPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRS 277
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 12/159 (7%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
+I+V L A L+D FK YG I + + +G+S+G G+++ +S + A++A+
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNAL-- 186
Query: 163 LDGSDVGGRELRVKFSVEMSL-ERTDANANAGEMYASPKRTFYYE-APHKLYVGNLARVV 220
++ + K M+ + G +P + F E K+YV N++ +
Sbjct: 187 --------KQPQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADI 238
Query: 221 KPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFES 259
P++L F RFG + + D+ G+ + +A + S
Sbjct: 239 DPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRS 277
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 18/172 (10%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
+++V ++PR+ + F+ +G ++ V + ++ TG+ +GC +V + A AI
Sbjct: 45 VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIR 104
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
AL +++L YA +R KL+VG+L +
Sbjct: 105 ALHN--------------QITLPGGTGPVQV--RYADGERERIGTLEFKLFVGSLNKQAT 148
Query: 222 PEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNGT 272
+++ F++FG+V V ++ D + ++R F+ + S+ AA+ LNGT
Sbjct: 149 EKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGT 199
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 18/172 (10%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
+++V ++PR+ + F+ +G ++ V + ++ TG+ +GC +V + A AI
Sbjct: 120 VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIR 179
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
AL +++L YA +R KL+VG+L +
Sbjct: 180 ALHN--------------QITLPGGTGPVQV--RYADGERERIGTLEFKLFVGSLNKQAT 223
Query: 222 PEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNGT 272
+++ F++FG+V V ++ D + ++R F+ + S+ AA+ LNGT
Sbjct: 224 EKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGT 274
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 18/172 (10%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
+++V ++PR+ + F+ +G ++ V + ++ TG+ +GC +V + A AI
Sbjct: 120 VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIR 179
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
AL +++L YA +R KL+VG+L +
Sbjct: 180 ALHN--------------QITLPGGTGPVQV--RYADGERERIGTLEFKLFVGSLNKQAT 223
Query: 222 PEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNGT 272
+++ F++FG+V V ++ D + ++R F+ + S+ AA+ LNGT
Sbjct: 224 EKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGT 274
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 9/184 (4%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
++++ + + L + F +G ++ V V R TG RG G+V +
Sbjct: 6 GKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ 65
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEA---PHKLYVGNLAR 218
D + R++ VK + MS E +G AS R F A K++VG L
Sbjct: 66 --DKHHIDNRDVDVKRA--MSREEQSPAGRSGTFNAS--RNFDSGANVRTKKIFVGGLPP 119
Query: 219 VVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRT 278
+ ++ R +F +G V ++ D+ + R + F+SF+SE D + + G+
Sbjct: 120 ALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQ 179
Query: 279 IVVR 282
+ V+
Sbjct: 180 VEVK 183
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
+++V L + + L F +G + V + ETG SRG G+V +SA +AI
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 163 LDGSDVGGRELRVKFSVEMS 182
+DG ++ GR++RV + E S
Sbjct: 96 MDGKELNGRQIRVNLATERS 115
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 208 PHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESE-AERDAA 266
KL+VG L+ L+ F FG V V+ DR+ G++R + F+SF E + +A
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 267 MSLNGTEFYGRTIVVREGAQRT 288
++G E GR I V +R+
Sbjct: 94 KEMDGKELNGRQIRVNLATERS 115
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
+++V L + + L F +G + V + ETG SRG G+V +SA +AI
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 163 LDGSDVGGRELRVKFSVEMS 182
+DG ++ GR++RV + E S
Sbjct: 96 MDGKELNGRQIRVNLATERS 115
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 208 PHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESE-AERDAA 266
KL+VG L+ L+ F FG V V+ DR+ G++R + F+SF E + +A
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 267 MSLNGTEFYGRTIVVREGAQRT 288
++G E GR I V +R+
Sbjct: 94 KEMDGKELNGRQIRVNLATERS 115
>AT5G18810.1 | Symbols: SCL28, At-SCL28 | SC35-like splicing factor
28 | chr5:6268925-6271158 REVERSE LENGTH=236
Length = 236
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 100 GPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSA 159
GP + + NLP L D F+ +G + + + RN TGE RG G+V A A
Sbjct: 45 GPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEA 104
Query: 160 IAALDGSDVGGRELRVKFSVE 180
+ ++ +GGRE+ + F+ E
Sbjct: 105 MKRMNHKVIGGREIAIVFAEE 125
>AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid
binding;RNA binding | chr4:10677482-10681623 FORWARD
LENGTH=816
Length = 816
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 19/169 (11%)
Query: 117 HLLDLFKPYGTIISVEVSRNAETGE--SRGCGYVIMESINSAKSAIAALDGSDVGGRELR 174
H L K G I+SV + ++ + + S G G+V +S+ +A S L G+ + G L
Sbjct: 621 HFTKLVKQ-GKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATSVYRDLQGTVLDGHALI 679
Query: 175 VKFSVEMSLERTDANANAGEMYASPKRTFYYEAP-HKLYVGNLARVVKPEQLRNHFIRFG 233
++F ++ ++N + P KL+V N+A +LR F FG
Sbjct: 680 LRFCENKRSDKVGKDSNK-------------DKPCTKLHVKNIAFEATKRELRQLFSPFG 726
Query: 234 NVLSVRVLHDRKQGKARVYAFLSFESEAER-DAAMSLNGTEFYGRTIVV 281
+ S+R L + G+ YAF+ F ++ E +A +L T FYGR +V+
Sbjct: 727 QIKSMR-LPKKNIGQYAGYAFVEFVTKQEALNAKKALASTHFYGRHLVL 774
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 18/173 (10%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
+++V +P+ LL LF+ + + V + + T RGC ++ + A I +
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 163 LDGSDV---GGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARV 219
L+VK++ + LER D + +P+ HKL+VG L +
Sbjct: 73 FHNKKTLPGASSPLQVKYA-DGELERLDVL----DCSCNPE--------HKLFVGMLPKN 119
Query: 220 VKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNG 271
V ++++ F +G + +++L Q ++ FL +ES+ + AAM +LNG
Sbjct: 120 VSETEVQSLFSEYGTIKDLQILRGSLQ-TSKGCLFLKYESKEQAVAAMEALNG 171
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 45/74 (60%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+++ N+PR L F+P+G ++S +V + TG S+ G++ +S +A++AI +
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 400
Query: 164 DGSDVGGRELRVKF 177
+G + G++L+V+
Sbjct: 401 NGCQLSGKKLKVQL 414
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%)
Query: 102 CEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
+++V L L LF P+G I + R++ET +G G++ +S + A+ A+
Sbjct: 7 AQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALK 66
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGE 194
+LDG V GR + V+ + R N+N E
Sbjct: 67 SLDGKIVDGRLIFVEVAKNAEEVRAGINSNKAE 99
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 209 HKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM- 267
++ ++G LA LR+ F ++G+++ +V+ D+ G++R + F++F+ + D A+
Sbjct: 7 YRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIA 66
Query: 268 SLNGTEFYGRTIVV 281
++NG + GRTI V
Sbjct: 67 AMNGMDLDGRTITV 80
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 211 LYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSF-ESEAERDAAMSL 269
LY+G L +++ + L N F FG ++ +V+ DR G ++ Y F+ + + + A ++
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 270 NGTEFYGRTIVVR 282
NG F GRT+ VR
Sbjct: 542 NGYRFEGRTLAVR 554
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 211 LYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSF-ESEAERDAAMSL 269
LY+G L +++ + L N F FG ++ +V+ DR G ++ Y F+ + + + A ++
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 270 NGTEFYGRTIVVR 282
NG F GRT+ VR
Sbjct: 542 NGYRFEGRTLAVR 554
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 211 LYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSF-ESEAERDAAMSL 269
LY+G L +++ + L N F FG ++ +V+ DR G ++ Y F+ + + + A ++
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 270 NGTEFYGRTIVVR 282
NG F GRT+ VR
Sbjct: 542 NGYRFEGRTLAVR 554
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
++++ L S + L D F +G + V ++ + +G SRG G+V A SA A
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 163 LDGSDVGGRELRVKFSVE 180
+DG + GR LR+ F++E
Sbjct: 102 MDGKGLLGRPLRISFALE 119
>AT1G16610.3 | Symbols: SR45 | arginine/serine-rich 45 |
chr1:5675925-5678686 REVERSE LENGTH=425
Length = 425
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
++V +L R+ N AHL ++F +G +I VE++ + RG GYV ++ A+ A +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKR 201
DG+ + G+ ++ F++ R ++ + A+PKR
Sbjct: 160 DGAQIDGKVVKATFTLP---PRQKVSSPPKPVSAAPKR 194
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 45/74 (60%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
+++ N+PR L F+P+G ++S +V + TG S+ G++ +S +A++AI +
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 391
Query: 164 DGSDVGGRELRVKF 177
+G + G++L+V+
Sbjct: 392 NGCQLSGKKLKVQL 405
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 17/188 (9%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGT--IISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
I+V +L + A+L F I+SV+V RN G S G G+V ES + A +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
+G+ + + + + A+ + GE KR ++VG+L+ V
Sbjct: 163 EFNGTTMPNTDQPFRLNW--------ASFSTGE-----KRLENNGPDLSIFVGDLSPDVS 209
Query: 222 PEQLRNHFI-RFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNGTEFYGRTI 279
L F ++ +V + +V+ D G+++ Y F+ F E ER AM+ +NG + R +
Sbjct: 210 DNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAM 269
Query: 280 VVREGAQR 287
+ R
Sbjct: 270 RIGPATPR 277
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 19/157 (12%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
++ V +P ++ L D +G + V ++ TG SRG GYV S AK+A+
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 163 LDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKP 222
+G R L VK + EM K+ +++V + V
Sbjct: 64 E--HFLGNRILEVKVATPKE-----------EMRQPAKKV------TRIFVARIPSSVSE 104
Query: 223 EQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFES 259
R+HF R+G + + + D + R F++F S
Sbjct: 105 SDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSS 141
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 19/157 (12%)
Query: 103 EIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAA 162
++ V +P ++ L D +G + V ++ TG SRG GYV S AK+A+
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 163 LDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKP 222
+G R L VK + EM K+ +++V + V
Sbjct: 64 E--HFLGNRILEVKVATPKE-----------EMRQPAKKV------TRIFVARIPSSVSE 104
Query: 223 EQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFES 259
R+HF R+G + + + D + R F++F S
Sbjct: 105 SDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSS 141
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 17/182 (9%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGT--IISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
I+V +L + A+L F I+SV+V RN G S G G+V ES + A +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
+G+ + + + + A+ + GE KR ++VG+L+ V
Sbjct: 163 EFNGTTMPNTDQPFRLNW--------ASFSTGE-----KRLENNGPDLSIFVGDLSPDVS 209
Query: 222 PEQLRNHFI-RFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNGTEFYGRTI 279
L F ++ +V + +V+ D G+++ Y F+ F E ER AM+ +NG + R +
Sbjct: 210 DNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAM 269
Query: 280 VV 281
+
Sbjct: 270 RI 271
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 17/182 (9%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGT--IISVEVSRNAETGESRGCGYVIMESINSAKSAIA 161
I+V +L + A+L F I+S++V RN G S G G+V ES + A +
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 162 ALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVK 221
+G+ + + + + A+ + GE KR ++VG+LA V
Sbjct: 165 EFNGAPMPNTDQPFRLNW--------ASFSTGE-----KRLENNGPDLSIFVGDLAPDVS 211
Query: 222 PEQLRNHFI-RFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMS-LNGTEFYGRTI 279
L F ++ +V + +V+ D G+++ Y F+ F E ER AM+ +NG + R +
Sbjct: 212 DALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAM 271
Query: 280 VV 281
+
Sbjct: 272 RI 273
>AT5G07290.1 | Symbols: AML4, ML4 | MEI2-like 4 |
chr5:2294248-2298491 FORWARD LENGTH=907
Length = 907
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 29/177 (16%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
++V N+ S L LFK +G + ++ + G++RG V I +A+ A AL
Sbjct: 213 LFVRNVDSSIEDCELGVLFKQFGDVRALHTA-----GKNRGFIMVSYYDIRAAQKAARAL 267
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
G + GR+L +++S+ E N++ G L+V NL + E
Sbjct: 268 HGRLLRGRKLDIRYSIPK--ENPKENSSEG----------------ALWVNNLDSSISNE 309
Query: 224 QLRNHFIRFGNVLSV-RVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTI 279
+L F +G + V R +H+ Q VY F+ + A LNG E GR +
Sbjct: 310 ELHGIFSSYGEIREVRRTMHENSQ----VYIEF-FDVRKAKVALQGLNGLEVAGRQL 361
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 81/188 (43%), Gaps = 8/188 (4%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
++ + + + F G + V + + + SRG GYV S AIA L
Sbjct: 233 VFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIA-L 291
Query: 164 DGSDVGGRELRVKFS-VEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKP 222
G + G+ + VK S E +L ++ A P Y +LYVGNL +
Sbjct: 292 SGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGP----YSGGARRLYVGNLHINMSE 347
Query: 223 EQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGT-EFYGRTIVV 281
+ LR F FG+V V+V D + G + + F+ F + A++LNG E GR I V
Sbjct: 348 DDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKV 406
Query: 282 REGAQRTE 289
+TE
Sbjct: 407 SAVTDQTE 414
>AT1G16610.2 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 |
chr1:5675925-5678686 REVERSE LENGTH=407
Length = 407
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
++V +L R+ N AHL ++F +G +I VE++ + RG GYV ++ A+ A +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKR 201
DG+ + G+ ++ F++ R ++ + A+PKR
Sbjct: 160 DGAQIDGKVVKATFTLP---PRQKVSSPPKPVSAAPKR 194
>AT1G16610.1 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 |
chr1:5675925-5678686 REVERSE LENGTH=414
Length = 414
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
++V +L R+ N AHL ++F +G +I VE++ + RG GYV ++ A+ A +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKR 201
DG+ + G+ ++ F++ R ++ + A+PKR
Sbjct: 160 DGAQIDGKVVKATFTLP---PRQKVSSPPKPVSAAPKR 194
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 192 AGEMYASPKRTFYYEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARV 251
AG+ + P + + E ++L+ G+L V + L F RF +V+ D++ GK +
Sbjct: 120 AGQSWEDPTLSEWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKG 179
Query: 252 YAFLSFESEAERDAAMS-LNGTEFYGRTIVVREGAQR 287
Y F+SF + A+ AA+ +NG R I +R+ + +
Sbjct: 180 YGFVSFLNPADLAAALKEMNGKYVGNRPIKLRKSSWK 216
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 81/188 (43%), Gaps = 8/188 (4%)
Query: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
++ + + + F G + V + + + SRG GYV S AIA L
Sbjct: 184 VFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIA-L 242
Query: 164 DGSDVGGRELRVKFS-VEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKP 222
G + G+ + VK S E +L ++ A P Y +LYVGNL +
Sbjct: 243 SGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGP----YSGGARRLYVGNLHINMSE 298
Query: 223 EQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGT-EFYGRTIVV 281
+ LR F FG+V V+V D + G + + F+ F + A++LNG E GR I V
Sbjct: 299 DDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKV 357
Query: 282 REGAQRTE 289
+TE
Sbjct: 358 SAVTDQTE 365
>AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294422-17297609
REVERSE LENGTH=565
Length = 565
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 10/151 (6%)
Query: 147 YVIMESINSAKSAIAALDGSDVGGRELRVK--------FSVEMSLERTDANANAGEMYAS 198
+V M S+ A +A++ LDG G ++V+ + + + + N + +
Sbjct: 290 FVEMRSVEEASNAMS-LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLT 348
Query: 199 PKRTFYYEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFE 258
P + E P +++VG L Q+R FG + ++ DR+ G ++ YAF ++
Sbjct: 349 PGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ 408
Query: 259 SEAERD-AAMSLNGTEFYGRTIVVREGAQRT 288
+ D A +LNG + +T+ VR Q T
Sbjct: 409 DLSVTDIACAALNGIKMGDKTLTVRRANQGT 439
>AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294591-17297609
REVERSE LENGTH=542
Length = 542
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 10/151 (6%)
Query: 147 YVIMESINSAKSAIAALDGSDVGGRELRVK--------FSVEMSLERTDANANAGEMYAS 198
+V M S+ A +A++ LDG G ++V+ + + + + N + +
Sbjct: 290 FVEMRSVEEASNAMS-LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLT 348
Query: 199 PKRTFYYEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFE 258
P + E P +++VG L Q+R FG + ++ DR+ G ++ YAF ++
Sbjct: 349 PGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ 408
Query: 259 SEAERD-AAMSLNGTEFYGRTIVVREGAQRT 288
+ D A +LNG + +T+ VR Q T
Sbjct: 409 DLSVTDIACAALNGIKMGDKTLTVRRANQGT 439
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 210 KLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAE-RDAAMS 268
KLYV L+ + LR+ F +FGN++ + ++ D+ + + +AFL +E+E E A
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 269 LNGTEFYGRTIVVREGAQRTE 289
++G GR I V E R++
Sbjct: 138 MHGKFLDGRVIFVEEAKTRSD 158
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 74/164 (45%), Gaps = 13/164 (7%)
Query: 128 IISVEVSRNAETGESRGCGYVIMESINSAKSAIAALDGSDVGGRELRVKFS-VEMSLERT 186
II +SR SRG GYV S AIA L G + G+ + VK S E +L ++
Sbjct: 251 IIMDRISRR-----SRGIGYVEFYDTMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLVQS 304
Query: 187 DANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQ 246
A P Y +LYVGNL + + LR F FG+V V+V D +
Sbjct: 305 TTAAAGAGGMLGP----YSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ET 359
Query: 247 GKARVYAFLSFESEAERDAAMSLNGT-EFYGRTIVVREGAQRTE 289
G + + F+ F + A++LNG E GR I V +TE
Sbjct: 360 GLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKVSAVTDQTE 403
>AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=573
Length = 573
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 10/151 (6%)
Query: 147 YVIMESINSAKSAIAALDGSDVGGRELRVK--------FSVEMSLERTDANANAGEMYAS 198
+V M S+ A +A++ LDG G ++V+ + + + + N + +
Sbjct: 290 FVEMRSVEEASNAMS-LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLT 348
Query: 199 PKRTFYYEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFE 258
P + E P +++VG L Q+R FG + ++ DR+ G ++ YAF ++
Sbjct: 349 PGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ 408
Query: 259 SEAERD-AAMSLNGTEFYGRTIVVREGAQRT 288
+ D A +LNG + +T+ VR Q T
Sbjct: 409 DLSVTDIACAALNGIKMGDKTLTVRRANQGT 439