Miyakogusa Predicted Gene

Lj3g3v2515230.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2515230.2 tr|B2CP02|B2CP02_LOTJA Granule bound starch
synthase Ib OS=Lotus japonicus PE=2 SV=1,100,0,seg,NULL;
Glyco_transf_5,Starch synthase, catalytic domain;
UDP-Glycosyltransferase/glycogen phospho,CUFF.44105.2
         (273 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32900.1 | Symbols:  | UDP-Glycosyltransferase superfamily pr...   419   e-117
AT5G24300.2 | Symbols: SSI1 | Glycogen/starch synthases, ADP-glu...   151   4e-37
AT5G24300.1 | Symbols: SSI1, SSI, ATSS1 | Glycogen/starch syntha...   151   4e-37
AT3G01180.1 | Symbols: AtSS2, SS2 | starch synthase 2 | chr3:624...   151   4e-37
AT4G18240.1 | Symbols: ATSS4, SSIV, SS4 | starch synthase 4 | ch...    58   5e-09

>AT1G32900.1 | Symbols:  | UDP-Glycosyltransferase superfamily
           protein | chr1:11920582-11923506 REVERSE LENGTH=610
          Length = 610

 Score =  419 bits (1076), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 192/273 (70%), Positives = 221/273 (80%)

Query: 1   MNLIFLGTEVGPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTSVTIEVK 60
           M++IF+G EVGPWSKT                  HRVMTI PRYDQYKDAWDT V +++K
Sbjct: 84  MSVIFIGAEVGPWSKTGGLGDVLGGLPPALAARGHRVMTICPRYDQYKDAWDTCVVVQIK 143

Query: 61  VGDKTEKVGFFHCHKRGVDRVFVDHPIFLEKVWGKSGTKLYGPTAGEDYQDNQLRFSLFC 120
           VGDK E V FFHC+KRGVDRVFVDHPIFL KV GK+G+K+YGP  G DY DNQLRFSL C
Sbjct: 144 VGDKVENVRFFHCYKRGVDRVFVDHPIFLAKVVGKTGSKIYGPITGVDYNDNQLRFSLLC 203

Query: 121 QAALEAPRVLNLTSNKYFSGPYGEDVIFIANDWHTALIPCYLKSMYQSIGIYKNARVVYC 180
           QAALEAP+VLNL S+KYFSGPYGEDV+F+ANDWHTAL+PCYLKSMYQS G+Y NA+VV+C
Sbjct: 204 QAALEAPQVLNLNSSKYFSGPYGEDVVFVANDWHTALLPCYLKSMYQSRGVYMNAKVVFC 263

Query: 181 IHNIAYQGRFAFADFQLLNLPDQFKSSFDFLDGHVKPVIGRKTNWMKAGILESDLVLTVS 240
           IHNIAYQGRFAF D+ LLNLP  FKSSFDF+DG+ KPV GRK NWMKA ILE+  VLTVS
Sbjct: 264 IHNIAYQGRFAFDDYSLLNLPISFKSSFDFMDGYEKPVKGRKINWMKAAILEAHRVLTVS 323

Query: 241 PYYAEELVSGPDKGVELDNIIRRTGITGIVNGM 273
           PYYA+EL+SG D+GVEL   +R   ++GI+NGM
Sbjct: 324 PYYAQELISGVDRGVELHKYLRMKTVSGIINGM 356


>AT5G24300.2 | Symbols: SSI1 | Glycogen/starch synthases,
           ADP-glucose type | chr5:8266934-8270860 FORWARD
           LENGTH=652
          Length = 652

 Score =  151 bits (382), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/289 (35%), Positives = 148/289 (51%), Gaps = 34/289 (11%)

Query: 2   NLIFLGTEVGPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRY-------DQYKDAWDTS 54
           NL+F+ +E  P+SKT                  HRVM I+PRY         Y  A D  
Sbjct: 143 NLVFVTSEAAPYSKTGGLGDVCGSLPIALAGRGHRVMVISPRYLNGTAADKNYARAKDLG 202

Query: 55  VTIEVKVGDKTEKVGFFHCHKRGVDRVFVDHPIFLEKVWGKSGTKLYGPTAGEDYQDNQL 114
           + + V     +++V F+H ++ GVD VFVDH     K + + G   YG + G  + DNQ 
Sbjct: 203 IRVTVNCFGGSQEVSFYHEYRDGVDWVFVDH-----KSYHRPGNP-YGDSKGA-FGDNQF 255

Query: 115 RFSLFCQAALEAPRVLNLTSNKYFSGPYGEDVIFIANDWHTALIPCYLKSMYQSIGIYKN 174
           RF+L C AA EAP VL L     F+  YGE  +F+ NDWH  L+P  L + Y+  G+YK+
Sbjct: 256 RFTLLCHAACEAPLVLPLGG---FT--YGEKSLFLVNDWHAGLVPILLAAKYRPYGVYKD 310

Query: 175 ARVVYCIHNIAYQGRFAFADFQLLNLPDQFKSSFDFLDGHVKPV--------IGRKTNWM 226
           AR +  IHN+A+QG    A +  L LP ++  +     G V P          G   N +
Sbjct: 311 ARSILIIHNLAHQGVEPAATYTNLGLPSEWYGAV----GWVFPTWARTHALDTGEAVNVL 366

Query: 227 KAGILESDLVLTVSPYYAEELVSGPDKGVELDNII--RRTGITGIVNGM 273
           K  I+ SD ++TVS  YA E+ +  + G  L +++  R++ I GI NG+
Sbjct: 367 KGAIVTSDRIITVSQGYAWEITT-VEGGYGLQDLLSSRKSVINGITNGI 414


>AT5G24300.1 | Symbols: SSI1, SSI, ATSS1 | Glycogen/starch
           synthases, ADP-glucose type | chr5:8266934-8270860
           FORWARD LENGTH=652
          Length = 652

 Score =  151 bits (382), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/289 (35%), Positives = 148/289 (51%), Gaps = 34/289 (11%)

Query: 2   NLIFLGTEVGPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRY-------DQYKDAWDTS 54
           NL+F+ +E  P+SKT                  HRVM I+PRY         Y  A D  
Sbjct: 143 NLVFVTSEAAPYSKTGGLGDVCGSLPIALAGRGHRVMVISPRYLNGTAADKNYARAKDLG 202

Query: 55  VTIEVKVGDKTEKVGFFHCHKRGVDRVFVDHPIFLEKVWGKSGTKLYGPTAGEDYQDNQL 114
           + + V     +++V F+H ++ GVD VFVDH     K + + G   YG + G  + DNQ 
Sbjct: 203 IRVTVNCFGGSQEVSFYHEYRDGVDWVFVDH-----KSYHRPGNP-YGDSKGA-FGDNQF 255

Query: 115 RFSLFCQAALEAPRVLNLTSNKYFSGPYGEDVIFIANDWHTALIPCYLKSMYQSIGIYKN 174
           RF+L C AA EAP VL L     F+  YGE  +F+ NDWH  L+P  L + Y+  G+YK+
Sbjct: 256 RFTLLCHAACEAPLVLPLGG---FT--YGEKSLFLVNDWHAGLVPILLAAKYRPYGVYKD 310

Query: 175 ARVVYCIHNIAYQGRFAFADFQLLNLPDQFKSSFDFLDGHVKPV--------IGRKTNWM 226
           AR +  IHN+A+QG    A +  L LP ++  +     G V P          G   N +
Sbjct: 311 ARSILIIHNLAHQGVEPAATYTNLGLPSEWYGAV----GWVFPTWARTHALDTGEAVNVL 366

Query: 227 KAGILESDLVLTVSPYYAEELVSGPDKGVELDNII--RRTGITGIVNGM 273
           K  I+ SD ++TVS  YA E+ +  + G  L +++  R++ I GI NG+
Sbjct: 367 KGAIVTSDRIITVSQGYAWEITT-VEGGYGLQDLLSSRKSVINGITNGI 414


>AT3G01180.1 | Symbols: AtSS2, SS2 | starch synthase 2 |
           chr3:62456-65678 REVERSE LENGTH=792
          Length = 792

 Score =  151 bits (382), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/275 (38%), Positives = 133/275 (48%), Gaps = 20/275 (7%)

Query: 1   MNLIFLGTEVGPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTSVTIEVK 60
           MN+I +  E  P+SKT                  HRVM + PRY +Y +A D  V    K
Sbjct: 301 MNVILVAAECAPFSKTGGLGDVAGALPKSLARRGHRVMVVVPRYAEYAEAKDLGVRKRYK 360

Query: 61  VGDKTEKVGFFHCHKRGVDRVFVDHPIFLEKVWGKSGTKLYGPTAGEDYQDNQLRFSLFC 120
           V  +  +V +FH    GVD VF+D P F           L     G +  D   R  LFC
Sbjct: 361 VAGQDMEVMYFHAFIDGVDFVFIDSPEFRH---------LSNNIYGGNRLDILKRMVLFC 411

Query: 121 QAALEAPRVLNLTSNKYFSGPYGEDVIFIANDWHTALIPCYLKSMYQSIGIYKNARVVYC 180
           +AA+E P  +      Y  G    ++ FIANDWHTAL+P YLK+ Y+  GI K  R V  
Sbjct: 412 KAAVEVPWYVPCGGVCYGDG----NLAFIANDWHTALLPVYLKAYYRDHGIMKYTRSVLV 467

Query: 181 IHNIAYQGRFAFADFQLLNLPDQFKSSFDFLDGHVKPVIGRKTNWMKAGILESDLVLTVS 240
           IHNIA+QGR    DF  ++LP  +  SF   D    PV G   N   AG+  +D VLTVS
Sbjct: 468 IHNIAHQGRGPVDDFSYVDLPSHYLDSFKLYD----PVGGEHFNIFAAGLKAADRVLTVS 523

Query: 241 PYYAEELVSGPDKGVELDNIIRRTG--ITGIVNGM 273
             Y+ E V   + G  L NII        GIVNG+
Sbjct: 524 HGYSWE-VKTLEGGWGLHNIINENDWKFRGIVNGI 557


>AT4G18240.1 | Symbols: ATSS4, SSIV, SS4 | starch synthase 4 |
           chr4:10082221-10087044 FORWARD LENGTH=1040
          Length = 1040

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 78/172 (45%), Gaps = 30/172 (17%)

Query: 110 QDNQLRFSLFCQAALEAPRVLNLTSNKYFSGPYGEDVIFIANDWHTALIPCYLKSMYQSI 169
           QD+  RFS F +AALE    L L S K        D+I   +DW TA +      +Y   
Sbjct: 647 QDDFRRFSYFSRAALE----LLLQSGK------KPDIIH-CHDWQTAFVAPLYWDLYAPK 695

Query: 170 GIYKNARVVYCIHNIAYQGRFAFA-------DFQLLNLPDQFKSSFDFLDGHVKPVIGRK 222
           G+  +AR+ +  HN  YQG  + +       D   LN PD+ +              G +
Sbjct: 696 GL-DSARICFTCHNFEYQGTASASELGSCGLDVNQLNRPDRMQDHSS----------GDR 744

Query: 223 TNWMKAGILESDLVLTVSPYYAEELVSGP-DKGVELDNIIRRTGITGIVNGM 273
            N +K  I+ S++V TVSP YA+E+ +    KG+            GI+NG+
Sbjct: 745 VNPVKGAIIFSNIVTTVSPTYAQEVRTAEGGKGLHSTLNFHSKKFIGILNGI 796