Miyakogusa Predicted Gene
- Lj3g3v2484120.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2484120.1 Non Chatacterized Hit- tr|I1KHQ5|I1KHQ5_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,73.2,0,no
description,Nucleotide-binding, alpha-beta plait; seg,NULL; RRM_1,RNA
recognition motif domain; R,CUFF.44095.1
(280 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 236 1e-62
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 172 2e-43
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 170 8e-43
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 170 8e-43
AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 170 9e-43
AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 166 2e-41
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 165 3e-41
AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 164 7e-41
AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 163 1e-40
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 145 4e-35
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 144 8e-35
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 143 1e-34
AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 132 2e-31
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 127 8e-30
AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 118 6e-27
AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 117 1e-26
AT3G54770.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 102 2e-22
AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 101 5e-22
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 89 3e-18
AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 89 3e-18
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 83 2e-16
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 83 2e-16
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 83 2e-16
AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 83 2e-16
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 83 2e-16
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 81 7e-16
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 81 7e-16
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 1e-15
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 1e-15
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 1e-15
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 1e-15
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 78 5e-15
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 78 5e-15
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 77 1e-14
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 77 1e-14
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 77 2e-14
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 77 2e-14
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 77 2e-14
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 77 2e-14
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 77 2e-14
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 77 2e-14
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 76 3e-14
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 75 4e-14
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 75 4e-14
AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 5e-14
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 5e-14
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 75 5e-14
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 75 5e-14
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 7e-14
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 74 9e-14
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 74 2e-13
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 72 5e-13
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 72 5e-13
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 72 5e-13
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 72 5e-13
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 71 9e-13
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 70 2e-12
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 69 3e-12
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 69 3e-12
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 65 4e-11
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 65 4e-11
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 64 8e-11
AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 3e-10
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 6e-10
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 59 3e-09
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 59 3e-09
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 59 3e-09
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 3e-09
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 3e-09
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 7e-09
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 55 4e-08
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 55 4e-08
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 4e-08
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 55 5e-08
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 55 5e-08
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 55 5e-08
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 6e-08
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 55 6e-08
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 55 6e-08
AT3G13570.1 | Symbols: SCL30A, At-SCL30A | SC35-like splicing fa... 54 9e-08
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 54 2e-07
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 53 3e-07
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 52 3e-07
AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 5e-07
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 52 7e-07
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 50 1e-06
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 50 1e-06
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 50 1e-06
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 50 1e-06
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 50 2e-06
AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-lik... 50 2e-06
AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-lik... 49 3e-06
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 4e-06
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 4e-06
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 49 5e-06
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 49 5e-06
AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 6e-06
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 8e-06
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 236 bits (603), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/255 (55%), Positives = 168/255 (65%), Gaps = 33/255 (12%)
Query: 1 MSQQRQTQMMFGGGYNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTG 60
M+QQRQ QM G DT TK+FVGGLAWETQR+TMRRYFEQFGEI+EAVVITDKNTG
Sbjct: 1 MAQQRQFQMEGGNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTG 60
Query: 61 RSKGYGFVTFKDPESAMRACQNPSPVIDGRRANCNLASLGANKNPPPTL-HNGAGRFRPQ 119
RSKGYGFVTFK+ E+AMRACQN +PVIDGRRANCNLA LGA K PPT +G GRFR
Sbjct: 61 RSKGYGFVTFKEAEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHGTGRFRSP 120
Query: 120 PA----VVASPAYHGSSSSTFFY-----QPTRQYTFPYSAYGYSGYSQETMYPTSYYG-- 168
+ V SP + GSSSS+ F Q T Q+ FPYS YG+SGYSQE MYP +YY
Sbjct: 121 GSGVGLVAPSPQFRGSSSSSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEGMYPMNYYNHH 180
Query: 169 VYGVQQFPQY--YPSSEAGGLIQNNYIYPFYGQY--AQN----------IQAHGYGVQH- 213
+YG QQF Y +PS+ + G+ YP+Y QY AQ+ G+ Q+
Sbjct: 181 LYGGQQFSPYMGHPSAGSTGMFHG--FYPYYPQYNAAQSSNQAQAQVQAQHHQGFSFQYT 238
Query: 214 ----PQMAQFPFLPQ 224
P + Q+P+LP
Sbjct: 239 APPAPPLLQYPYLPH 253
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/201 (52%), Positives = 126/201 (62%), Gaps = 14/201 (6%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
DTTFTK+FVGGLAWETQ ET+R++FEQ+GEILEAVVI DKNTGRSKGYGFVTF+DPE+A
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAAR 79
Query: 78 RACQNPSPVIDGRRANCNLASLGANKNPPP--TLHNGAGRFRP-QPAVVASPAYHGSSSS 134
RAC +P+P+IDGRRANCNLASLG + P P + N GR RP P + GS
Sbjct: 80 RACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPNMPGRLRPASPYIGNVQGPRGSLIG 139
Query: 135 TFFYQPTRQYTFPYSA---YGYSGYSQETMYPTS--YYGVYGVQQFPQYYPSSEAGGLIQ 189
+ YQ Y + YG + Y E MY S Y Y QQ+ Q Y A
Sbjct: 140 NYPYQQPLPYNYQQGVVYPYGVTAYGPEYMYSQSQGLYSPYMGQQYLQVYGVPGA----V 195
Query: 190 NNYIYPFYGQYAQNI-QAHGY 209
N+ +Y YGQ +Q I HGY
Sbjct: 196 NSPVY-QYGQLSQTIPNGHGY 215
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 170 bits (431), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 110/213 (51%), Positives = 133/213 (62%), Gaps = 24/213 (11%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
DTTFTK+FVGGLAWETQ ET+RR+F+Q+G+ILEAVVITDKNTGRSKGYGFVTF+DPE+A
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79
Query: 78 RACQNPSPVIDGRRANCNLASLGANKNPP--PTLHNGAGRFR-PQPAV--VASPAYHGSS 132
RAC +P+P+IDGRRANCNLASLG ++ P + + GR R P P V V SP
Sbjct: 80 RACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYVGSVQSPRGLHFG 139
Query: 133 SSTFFYQPTRQY----TFPYSAYGYSGYSQETMYPTS--YYGVYGVQQFPQYYPSSEAGG 186
S + PT Y +P YG + Y + MY S +YG Y QQ+ Q Y G
Sbjct: 140 SHPYHQPPTYNYQQGVVYP---YGVTPYGPDYMYSQSQGFYGPYMGQQYLQVY--GVPGA 194
Query: 187 LIQNNYIYPFYGQYAQNIQ-AHGY----GVQHP 214
+ Y YGQ + I AHGY G HP
Sbjct: 195 VNSPGYQ---YGQLSHTIPGAHGYTAGQGYSHP 224
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 170 bits (431), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 110/213 (51%), Positives = 133/213 (62%), Gaps = 24/213 (11%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
DTTFTK+FVGGLAWETQ ET+RR+F+Q+G+ILEAVVITDKNTGRSKGYGFVTF+DPE+A
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79
Query: 78 RACQNPSPVIDGRRANCNLASLGANKNPP--PTLHNGAGRFR-PQPAV--VASPAYHGSS 132
RAC +P+P+IDGRRANCNLASLG ++ P + + GR R P P V V SP
Sbjct: 80 RACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYVGSVQSPRGLHFG 139
Query: 133 SSTFFYQPTRQY----TFPYSAYGYSGYSQETMYPTS--YYGVYGVQQFPQYYPSSEAGG 186
S + PT Y +P YG + Y + MY S +YG Y QQ+ Q Y G
Sbjct: 140 SHPYHQPPTYNYQQGVVYP---YGVTPYGPDYMYSQSQGFYGPYMGQQYLQVY--GVPGA 194
Query: 187 LIQNNYIYPFYGQYAQNIQ-AHGY----GVQHP 214
+ Y YGQ + I AHGY G HP
Sbjct: 195 VNSPGYQ---YGQLSHTIPGAHGYTAGQGYSHP 224
>AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=244
Length = 244
Score = 170 bits (431), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/168 (54%), Positives = 117/168 (69%), Gaps = 10/168 (5%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
DTTFTK+FVGGLAWET + ++R YFEQFG+I+EAVVITDK++GRSKGYGFVTF DPE+A
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 78 RACQNPSPVIDGRRANCNLASLGANKNPPPT-LHNGAGRFRPQPAVVASP-AYHGSSSST 135
+AC +P+PVIDGRRANCNLA+ G ++ P + +H G + V SP H +++T
Sbjct: 63 KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGG---RGMKVTSPFKTHFGTAAT 119
Query: 136 FFYQPT--RQYTFPYS-AYGYSGYSQETMYPTSYYGVYG--VQQFPQY 178
P YT PY+ +G+S YS + YPTSYY VYG Q P Y
Sbjct: 120 AIPSPLPFSHYTLPYTNPFGFSSYSMDYNYPTSYYNVYGGATAQHPMY 167
>AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=245
Length = 245
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/169 (54%), Positives = 117/169 (69%), Gaps = 11/169 (6%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
DTTFTK+FVGGLAWET + ++R YFEQFG+I+EAVVITDK++GRSKGYGFVTF DPE+A
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 78 RACQNPSPVIDGRRANCNLASLGANKNPPPT-LHNGAGRFRPQPAVVASP-AYHGSSSST 135
+AC +P+PVIDGRRANCNLA+ G ++ P + +H G + V SP H +++T
Sbjct: 63 KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGG---RGMKVTSPFKTHFGTAAT 119
Query: 136 FFYQPT--RQYTFPYS-AYGYSGYSQETMYPT-SYYGVYG--VQQFPQY 178
P YT PY+ +G+S YS + YPT SYY VYG Q P Y
Sbjct: 120 AIPSPLPFSHYTLPYTNPFGFSSYSMDYNYPTQSYYNVYGGATAQHPMY 168
>AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107949 FORWARD LENGTH=347
Length = 347
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/172 (51%), Positives = 113/172 (65%), Gaps = 3/172 (1%)
Query: 10 MFGGGYNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVT 69
M GG DTT+TK+FVGGLAWET +ETM+++FEQFGEILEAVVITDK +GRSKGYGFVT
Sbjct: 1 MAGGIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVT 60
Query: 70 FKDPESAMRACQNPSPVIDGRRANCNLASLGANKNPPPTL-HNGAGRFRPQPAVVASPAY 128
F++ E+A AC + +PVIDGRRANCNLASLG ++ P T H G GR ++++
Sbjct: 61 FREAEAARSACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMSTMQT 120
Query: 129 HGSSSSTFFYQPTRQY-TFPYSAYGYSGYSQE-TMYPTSYYGVYGVQQFPQY 178
Y P + +GYS YS + + +PT+ YG+YG QY
Sbjct: 121 GFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQY 172
>AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107618 FORWARD LENGTH=242
Length = 242
Score = 164 bits (415), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 88/172 (51%), Positives = 113/172 (65%), Gaps = 3/172 (1%)
Query: 10 MFGGGYNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVT 69
M GG DTT+TK+FVGGLAWET +ETM+++FEQFGEILEAVVITDK +GRSKGYGFVT
Sbjct: 1 MAGGIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVT 60
Query: 70 FKDPESAMRACQNPSPVIDGRRANCNLASLGANKNPPPTL-HNGAGRFRPQPAVVASPAY 128
F++ E+A AC + +PVIDGRRANCNLASLG ++ P T H G GR ++++
Sbjct: 61 FREAEAARSACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMSTMQT 120
Query: 129 HGSSSSTFFYQPTRQYT-FPYSAYGYSGYSQE-TMYPTSYYGVYGVQQFPQY 178
Y P + +GYS YS + + +PT+ YG+YG QY
Sbjct: 121 GFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQY 172
>AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107659 FORWARD LENGTH=249
Length = 249
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/172 (51%), Positives = 113/172 (65%), Gaps = 3/172 (1%)
Query: 10 MFGGGYNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVT 69
M GG DTT+TK+FVGGLAWET +ETM+++FEQFGEILEAVVITDK +GRSKGYGFVT
Sbjct: 1 MAGGIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVT 60
Query: 70 FKDPESAMRACQNPSPVIDGRRANCNLASLGANKNPPPTL-HNGAGRFRPQPAVVASPAY 128
F++ E+A AC + +PVIDGRRANCNLASLG ++ P T H G GR ++++
Sbjct: 61 FREAEAARSACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMSTMQT 120
Query: 129 HGSSSSTFFYQPTRQYT-FPYSAYGYSGYSQE-TMYPTSYYGVYGVQQFPQY 178
Y P + +GYS YS + + +PT+ YG+YG QY
Sbjct: 121 GFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQY 172
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 67/99 (67%), Positives = 80/99 (80%), Gaps = 5/99 (5%)
Query: 1 MSQQRQTQMMFGGGYNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTG 60
MSQ + FG DTT+TK+FVGGLAWET + MRRYFEQFGEILEAV+ITDKNTG
Sbjct: 1 MSQTSYYRSPFG-----DTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTG 55
Query: 61 RSKGYGFVTFKDPESAMRACQNPSPVIDGRRANCNLASL 99
+SKGYGFVTF++ +SA RA +P+PVIDGR+ANCN+AS
Sbjct: 56 KSKGYGFVTFRESDSATRAVADPNPVIDGRKANCNIASF 94
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 144 bits (362), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 67/99 (67%), Positives = 80/99 (80%), Gaps = 5/99 (5%)
Query: 1 MSQQRQTQMMFGGGYNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTG 60
MSQ + FG DTT+TK+FVGGLAWET + MRRYFEQFGEILEAV+ITDKNTG
Sbjct: 1 MSQTSYYRSPFG-----DTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTG 55
Query: 61 RSKGYGFVTFKDPESAMRACQNPSPVIDGRRANCNLASL 99
+SKGYGFVTF++ +SA RA +P+PVIDGR+ANCN+AS
Sbjct: 56 KSKGYGFVTFRESDSATRAVADPNPVIDGRKANCNIASF 94
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 66/98 (67%), Positives = 79/98 (80%), Gaps = 3/98 (3%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
DTT TK+FVGGLAWET + MRRYF+QFGEILEAV+ITDK TG+SKGYGFVTF+D +SA
Sbjct: 13 DTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSAT 72
Query: 78 RACQNPSPVIDGRRANCNLASLGANKNPPPTLHNGAGR 115
RA +P+PVIDGR+ANCN+AS G P P+ G G+
Sbjct: 73 RAVADPNPVIDGRKANCNIASFG---RPRPSTPRGRGQ 107
>AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275827 REVERSE LENGTH=261
Length = 261
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 74/92 (80%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
DT TK+FVGGLAW+T +E M +F ++G+ILEAV+I+DK T RSKGYGFVTFKD ++A
Sbjct: 13 DTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAAT 72
Query: 78 RACQNPSPVIDGRRANCNLASLGANKNPPPTL 109
RAC++ +P+I+GRRANCNLASLG PT+
Sbjct: 73 RACEDSTPIINGRRANCNLASLGGRLRKSPTM 104
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 68/85 (80%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
N DT +TK++VGGL WET+ E +R YFEQFG+I+ ++ D+ TGRS+GYGFVTF+D ES
Sbjct: 46 NVDTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAES 105
Query: 76 AMRACQNPSPVIDGRRANCNLASLG 100
A RACQNP PVIDGR A CNLA +G
Sbjct: 106 ATRACQNPKPVIDGREAKCNLAYIG 130
>AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21798382-21799109 FORWARD LENGTH=169
Length = 169
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 74/108 (68%), Gaps = 4/108 (3%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
N DTTFTK++VGGL W T++E + +F++FGEI+ V+ D+ T RS+GYGFVTFKD ES
Sbjct: 7 NFDTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAES 66
Query: 76 AMRACQNPSPVIDGRRANCNLASLGANKNP----PPTLHNGAGRFRPQ 119
A RAC++P+P I+GR NC LA +GA P P L R+ PQ
Sbjct: 67 ATRACKDPNPTIEGRITNCKLAFVGAKVKPNQSQPSNLPQLLPRYDPQ 114
>AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2199653-2201150 REVERSE LENGTH=317
Length = 317
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 67/89 (75%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
N+DT TK+FVG L W T + +RRYFEQFG++++A V+++ GRSKGYGF+TF+D S
Sbjct: 6 NHDTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVS 65
Query: 76 AMRACQNPSPVIDGRRANCNLASLGANKN 104
+RA QN P+IDGR NCNLAS GA +N
Sbjct: 66 TVRALQNSKPIIDGRTTNCNLASAGAKQN 94
>AT3G54770.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275731 REVERSE LENGTH=218
Length = 218
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 69/100 (69%), Gaps = 13/100 (13%)
Query: 38 MRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQNPSPVIDGRRANCNLA 97
M +F ++G+ILEAV+I+DK T RSKGYGFVTFKD ++A RAC++ +P+I+GRRANCNLA
Sbjct: 1 MYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRANCNLA 60
Query: 98 SLGANKNPPPTLHNGAGRFRPQPAVVASPAYHGSSSSTFF 137
SLG GR RP+ A+P + G+ S ++
Sbjct: 61 SLG-------------GRLRPKNGNRATPPHVGNHSQWYY 87
>AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21806622-21807012 FORWARD LENGTH=100
Length = 100
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 59/80 (73%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
TK++V GL W T+ E + YFE+FGEI+ A V+ D T RSKG+GFVTF++ ESA RAC+
Sbjct: 9 TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACE 68
Query: 82 NPSPVIDGRRANCNLASLGA 101
NP+ IDGR NC LA LGA
Sbjct: 69 NPNHTIDGRTVNCKLAYLGA 88
>AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9389407-9390450 REVERSE LENGTH=347
Length = 347
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 53/85 (62%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
+ D T K+FV GL WET RET+ FE +GEI E V+ DK TG++KG+GFV FK +
Sbjct: 98 DRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKG 157
Query: 76 AMRACQNPSPVIDGRRANCNLASLG 100
A A + P I R A C LAS+G
Sbjct: 158 AKEALKEPKKRILNRTATCQLASMG 182
>AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9388571-9390450 REVERSE LENGTH=343
Length = 343
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 53/85 (62%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
+ D T K+FV GL WET RET+ FE +GEI E V+ DK TG++KG+GFV FK +
Sbjct: 98 DRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKG 157
Query: 76 AMRACQNPSPVIDGRRANCNLASLG 100
A A + P I R A C LAS+G
Sbjct: 158 AKEALKEPKKRILNRTATCQLASMG 182
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
KLF+GG++WET + +R YF FGE+LEAV++ D+ TGR++G+GFV F DP A R
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVL- 65
Query: 83 PSPVIDGRRANCNLA 97
+IDG+ A
Sbjct: 66 LKHIIDGKIVEAKKA 80
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K+FVGGLA ++YF QFG I + VV+ D T R +G+GF+++ E+ + Q
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 83 PSPVIDGRRANCNLA 97
++G+ LA
Sbjct: 167 TFHELNGKMVEVKLA 181
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
KLF+GG++WET + +R YF FGE+LEAV++ D+ TGR++G+GFV F DP A R
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVL- 65
Query: 83 PSPVIDGRRANCNLA 97
+IDG+ A
Sbjct: 66 LKHIIDGKIVEAKKA 80
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K+FVGGLA ++YF QFG I + VV+ D T R +G+GF+++ E+ + Q
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 83 PSPVIDGRRANCNLA 97
++G+ LA
Sbjct: 167 TFHELNGKMVEVKLA 181
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
KLF+GG++WET + +R YF FGE+LEAV++ D+ TGR++G+GFV F DP A R
Sbjct: 6 CKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVL 65
Query: 82 NPSPVIDGR 90
+IDG+
Sbjct: 66 -LKHIIDGK 73
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K+FVGGLA ++YF QFG I + VV+ D T R +G+GF+++ E+ + Q
Sbjct: 129 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 188
Query: 83 PSPVIDGRRANCNLA 97
++G+ LA
Sbjct: 189 TFHELNGKMVEVKLA 203
>AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 55/85 (64%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
++D + KLF+ GLA +T E +R F +G++ EA+VI DK TG+SKGYGFVTF +
Sbjct: 69 DSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDG 128
Query: 76 AMRACQNPSPVIDGRRANCNLASLG 100
A+ A + PS IDGR LA+ G
Sbjct: 129 ALLALKEPSKKIDGRVTVTQLAASG 153
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
D + K++V + ++ + + +F +G++ E + DK TG+S+G+ +K E A
Sbjct: 163 DISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQ 222
Query: 78 RACQNPSPVIDGRRANCNLASLGANKNPP 106
A +P VIDG+ NC LA G P
Sbjct: 223 AALADPVKVIDGKHLNCKLAVDGKKGGKP 251
>AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 55/85 (64%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
++D + KLF+ GLA +T E +R F +G++ EA+VI DK TG+SKGYGFVTF +
Sbjct: 69 DSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDG 128
Query: 76 AMRACQNPSPVIDGRRANCNLASLG 100
A+ A + PS IDGR LA+ G
Sbjct: 129 ALLALKEPSKKIDGRVTVTQLAASG 153
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
D + K++V + ++ + + +F +G++ E + DK TG+S+G+ +K E A
Sbjct: 163 DISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQ 222
Query: 78 RACQNPSPVIDGRRANCNLASLGANKNPP 106
A +P VIDG+ NC LA G P
Sbjct: 223 AALADPVKVIDGKHLNCKLAVDGKKGGKP 251
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 19 TTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMR 78
+ KLF+GG++W+T E ++ YF ++G+++EAV++ D+ TGR++G+GF+ F DP A R
Sbjct: 12 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 71
Query: 79 ACQNPSPVIDGRRANCNLA 97
+ +IDGR A
Sbjct: 72 VIMDKH-IIDGRTVEAKKA 89
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K+FVGGL + YF+QFG I + VV+ D NT R +G+GF+TF ES
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 182
Query: 83 PSPVIDGRRANCNLA 97
++G+ A
Sbjct: 183 TFHELNGKMVEVKRA 197
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 19 TTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMR 78
+ KLF+GG++W+T E ++ YF ++G+++EAV++ D+ TGR++G+GF+ F DP A R
Sbjct: 9 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 68
Query: 79 ACQNPSPVIDGRRANCNLA 97
+ +IDGR A
Sbjct: 69 VIMDKH-IIDGRTVEAKKA 86
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K+FVGGL + YF+QFG I + VV+ D NT R +G+GF+TF ES
Sbjct: 120 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 179
Query: 83 PSPVIDGRRANCNLA 97
++G+ A
Sbjct: 180 TFHELNGKMVEVKRA 194
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
++ KLF+GG++W+T E +R YF +G+++EAV++ D+ TGR++G+GF+ F DP +
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 78 RACQNPSPVIDGR 90
R + +IDGR
Sbjct: 62 RVIMDKH-IIDGR 73
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
K+FVGGL E + YF+QFG I + VV+ D NT R +G+GF+TF ++ R
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
++ KLF+GG++W+T E +R YF +G+++EAV++ D+ TGR++G+GF+ F DP +
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 78 RACQNPSPVIDGR 90
R + +IDGR
Sbjct: 62 RVIMDKH-IIDGR 73
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
K+FVGGL E + YF+QFG I + VV+ D NT R +G+GF+TF ++ R
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
++ KLF+GG++W+T E +R YF +G+++EAV++ D+ TGR++G+GF+ F DP +
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 78 RACQNPSPVIDGR 90
R + +IDGR
Sbjct: 62 RVIMDKH-IIDGR 73
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K+FVGGL E + YF+QFG I + VV+ D NT R +G+GF+TF ++ R
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 83 PSPVIDGR 90
++G+
Sbjct: 171 TFHELNGK 178
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
++ KLF+GG++W+T E +R YF +G+++EAV++ D+ TGR++G+GF+ F DP +
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 78 RACQNPSPVIDGR 90
R + +IDGR
Sbjct: 62 RVIMDKH-IIDGR 73
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K+FVGGL E + YF+QFG I + VV+ D NT R +G+GF+TF ++ R
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 83 PSPVIDGR 90
++G+
Sbjct: 171 TFHELNGK 178
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
KLF+GG++W+T E ++ YF FGE++EAV++ D+ TGR++G+GFV F DP A
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 83 PSPVIDGRRANCNLA 97
IDGR A
Sbjct: 67 KHN-IDGRLVEAKKA 80
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K+FVGGL + YFEQFG + VV+ D NT R +G+GF+T+ E+ +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 83 PSPVIDGRRANCNLA 97
++G+ A
Sbjct: 169 TFHELNGKMVEVKRA 183
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
KLF+GG++W+T E ++ YF FGE++EAV++ D+ TGR++G+GFV F DP A
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 83 PSPVIDGRRANCNLA 97
IDGR A
Sbjct: 67 KHN-IDGRLVEAKKA 80
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K+FVGGL + YFEQFG + VV+ D NT R +G+GF+T+ E+ +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 83 PSPVIDGRRANCNLA 97
++G+ A
Sbjct: 169 TFHELNGKMVEVKRA 183
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 50/85 (58%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
+ D K+FV GL W+T+ +++ F+Q+GEI + + DK +G+SKGYGF+ FK
Sbjct: 122 DEDLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSG 181
Query: 76 AMRACQNPSPVIDGRRANCNLASLG 100
A A + P I R C LAS+G
Sbjct: 182 ARNALKQPQKKIGTRMTACQLASIG 206
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 15 YNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPE 74
+N + K++V ++ + + + +F +FGEI E + DK TGR KG+ ++ E
Sbjct: 220 FNPENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLE 279
Query: 75 SAMRACQNPSPVIDGRRANCNLASLG 100
SA +A + P +G +C+ A+ G
Sbjct: 280 SAKKALEEPHKTFEGHVLHCHKANDG 305
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 50/85 (58%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
+ D K+FV GL W+T+ +++ F+Q+GEI + + DK +G+SKGYGF+ FK
Sbjct: 122 DEDLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSG 181
Query: 76 AMRACQNPSPVIDGRRANCNLASLG 100
A A + P I R C LAS+G
Sbjct: 182 ARNALKQPQKKIGTRMTACQLASIG 206
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 15 YNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPE 74
+N + K++V ++ + + + +F +FGEI E + DK TGR KG+ ++ E
Sbjct: 220 FNPENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLE 279
Query: 75 SAMRACQNPSPVIDGRRANCNLASLG 100
SA +A + P +G +C+ A+ G
Sbjct: 280 SAKKALEEPHKTFEGHVLHCHKANDG 305
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 49/85 (57%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
+ D K+FV GL W+T+ ET+ F+Q+GEI + + DK +G+SKGYGF+ +K
Sbjct: 134 DEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSG 193
Query: 76 AMRACQNPSPVIDGRRANCNLASLG 100
A A + P I R C LAS G
Sbjct: 194 ARNALKQPQKKIGSRMTACQLASKG 218
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
N++ T K++V + E + + +F +FGEI E + DK TGR KG+ +K ES
Sbjct: 239 NSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSES 298
Query: 76 AMRACQNPSPVIDGRRANCNLASLG 100
A RA + P +G +C A G
Sbjct: 299 AKRALEEPHKTFEGHILHCQKAIDG 323
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 49/85 (57%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
+ D K+FV GL W+T+ ET+ F+Q+GEI + + DK +G+SKGYGF+ +K
Sbjct: 134 DEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSG 193
Query: 76 AMRACQNPSPVIDGRRANCNLASLG 100
A A + P I R C LAS G
Sbjct: 194 ARNALKQPQKKIGSRMTACQLASKG 218
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
N++ T K++V + E + + +F +FGEI E + DK TGR KG+ +K ES
Sbjct: 239 NSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSES 298
Query: 76 AMRACQNPSPVIDGRRANCNLASLG 100
A RA + P +G +C A G
Sbjct: 299 AKRALEEPHKTFEGHILHCQKAIDG 323
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 49/85 (57%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
+ D K+FV GL W+T+ ET+ F+Q+GEI + + DK +G+SKGYGF+ +K
Sbjct: 134 DEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSG 193
Query: 76 AMRACQNPSPVIDGRRANCNLASLG 100
A A + P I R C LAS G
Sbjct: 194 ARNALKQPQKKIGSRMTACQLASKG 218
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
N++ T K++V + E + + +F +FGEI E + DK TGR KG+ +K ES
Sbjct: 239 NSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSES 298
Query: 76 AMRACQNPSPVIDGRRANCNLASLG 100
A RA + P +G +C A G
Sbjct: 299 AKRALEEPHKTFEGHILHCQKAIDG 323
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 49/85 (57%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
+ D K+FV GL W+T+ ET+ F+Q+GEI + + DK +G+SKGYGF+ +K
Sbjct: 134 DEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSG 193
Query: 76 AMRACQNPSPVIDGRRANCNLASLG 100
A A + P I R C LAS G
Sbjct: 194 ARNALKQPQKKIGSRMTACQLASKG 218
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
N++ T K++V + E + + +F +FGEI E + DK TGR KG+ +K ES
Sbjct: 239 NSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSES 298
Query: 76 AMRACQNPSPVIDGRRANCNLASLG 100
A RA + P +G +C A G
Sbjct: 299 AKRALEEPHKTFEGHILHCQKAIDG 323
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 49/85 (57%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
+ D K+FV GL W+T+ ET+ F+Q+GEI + + DK +G+SKGYGF+ +K
Sbjct: 134 DEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSG 193
Query: 76 AMRACQNPSPVIDGRRANCNLASLG 100
A A + P I R C LAS G
Sbjct: 194 ARNALKQPQKKIGSRMTACQLASKG 218
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
N++ T K++V + E + + +F +FGEI E + DK TGR KG+ +K ES
Sbjct: 239 NSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSES 298
Query: 76 AMRACQNPSPVIDGRRANCNLASLG 100
A RA + P +G +C A G
Sbjct: 299 AKRALEEPHKTFEGHILHCQKAIDG 323
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=613
Length = 613
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 48/83 (57%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
+ D +FV G W+T +E ++ FE +GEI E V+ DK+TGR KGYGFV FK +
Sbjct: 402 DRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKG 461
Query: 76 AMRACQNPSPVIDGRRANCNLAS 98
A A + P + R CNLAS
Sbjct: 462 AREALKRPEKRMYNRIVVCNLAS 484
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
D+ KLFVGG++WET + +R +F +GE+ +A+V+ DK TGR +G+GFV F DP
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 78 RACQNPSPVIDGRRANCNLA 97
R Q ID R + A
Sbjct: 62 RVLQEKHS-IDTREVDVKRA 80
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRAC 80
K+FVGGL E R+YFE +G + + ++ D+ T R +G+GFV+F D E A+ +
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSF-DSEDAVDSV 167
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
+KLFVGGL+W T ++++ F FGE+ EA VI D+ TGRS+G+GFV+F +SA A +
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 82 N-PSPVIDGRRANCNLAS 98
++GR+ NLA+
Sbjct: 95 EMDGKELNGRQIRVNLAT 112
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
+KLFVGGL+W T ++++ F FGE+ EA VI D+ TGRS+G+GFV+F +SA A +
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 82 N-PSPVIDGRRANCNLAS 98
++GR+ NLA+
Sbjct: 95 EMDGKELNGRQIRVNLAT 112
>AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9392397-9393545 REVERSE LENGTH=382
Length = 382
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
+ D++ +FV GL W+T E ++ FE +GEI E V+ DK+TGR+KG+GFV FK +
Sbjct: 157 DRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKG 216
Query: 76 AMRACQNPSPVIDGRRANC 94
A A +NP + R +C
Sbjct: 217 ARAALKNPEKRMYNRTVSC 235
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
KLFVGG++WET ET YF +FGE++++V++TD+ TG +G+GFVTF D A + +
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 83 PSPVIDGRRANC 94
VID R+ +
Sbjct: 127 DH-VIDDRKVDL 137
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 39/56 (69%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMR 78
K+FVGGL + + ++ YF +G+I+E ++ D +TGRS+G+GFVTF+ +S R
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDR 213
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRAC-- 80
+ FVGGLAW T E ++R F QFG+++++ +I D+ +GRS+G+GFVTFKD E AMR
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD-EKAMRDAIE 65
Query: 81 QNPSPVIDGRRANCNLA 97
+ +DGR N A
Sbjct: 66 EMNGKELDGRVITVNEA 82
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRAC-- 80
+ FVGGLAW T E ++R F QFG+++++ +I D+ +GRS+G+GFVTFKD E AMR
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD-EKAMRDAIE 65
Query: 81 QNPSPVIDGRRANCNLA 97
+ +DGR N A
Sbjct: 66 EMNGKELDGRVITVNEA 82
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
KLF+GG++W+T +R YF FGE+L+ V+ +K TGR +G+GFV F DP R Q+
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 83 PSPVIDGRRANCNLA 97
ID R + A
Sbjct: 67 KHH-IDNRDVDVKRA 80
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 1 MSQQRQTQMMFGGGYNNDTTFT--------KLFVGGLAWETQRETMRRYFEQFGEILEAV 52
MS++ Q+ G +N F K+FVGGL + R YFE +G + +AV
Sbjct: 81 MSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAV 140
Query: 53 VITDKNTGRSKGYGFVTFKDPESAMRACQNPSPVIDGRRANCNLASLGANKNP 105
++ D+ T R +G+GFV+F +S ++G++ A L + NP
Sbjct: 141 IMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRA-LPKDANP 192
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 74.3 bits (181), Expect = 9e-14, Method: Composition-based stats.
Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRAC-- 80
+ FVGGLAW T E ++R F QFG+++++ +I D+ +GRS+G+GFVTFKD E AMR
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD-EKAMRDAIE 65
Query: 81 QNPSPVIDGRRANCNLA 97
+ +DGR N A
Sbjct: 66 EMNGKELDGRVITVNEA 82
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 44/56 (78%), Gaps = 1/56 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMR 78
+ FVGGLAW T E ++R F QFG+++++ +I D+ +GRS+G+GFVTFKD E AMR
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD-EKAMR 61
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
TKLF+GGL+W T ++R F FG++++A VI D+ TGRS+G+GFV F D +A A
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 82 NPSPVIDGRRAN 93
+DG+ N
Sbjct: 95 E----MDGKELN 102
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
TKLF+GGL+W T ++R F FG++++A VI D+ TGRS+G+GFV F D +A A
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 82 NPSPVIDGRRAN 93
+DG+ N
Sbjct: 95 E----MDGKELN 102
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
TKLF+GGL+W T ++R F FG++++A VI D+ TGRS+G+GFV F D +A A
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 82 NPSPVIDGRRAN 93
+DG+ N
Sbjct: 95 E----MDGKELN 102
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
TKLF+GGL+W T ++R F FG++++A VI D+ TGRS+G+GFV F D +A A
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 82 NPSPVIDGRRAN 93
+DG+ N
Sbjct: 95 E----MDGKELN 102
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 4/69 (5%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
+KLF+GG+A+ +++R F ++GE+++ VI D+ TGRS+G+GFVTF E+A A Q
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 82 NPSPVIDGR 90
+DGR
Sbjct: 100 ----ALDGR 104
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
+K+FVGG+++ T +R F ++GE+++A +I D+ TGRS+G+ FVTF E A A Q
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 82 NPSPVIDGRRANCNLAS 98
+ GRR N A+
Sbjct: 94 LDGQDLHGRRIRVNYAT 110
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
+ FVGGLAW T + F Q+G+++++ +I D+ TGRS+G+GFVTFKD ++ A +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 83 PS-PVIDGRRANCNLA 97
+ +DGR N A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
+ FVGGLAW T + F Q+G+++++ +I D+ TGRS+G+GFVTFKD ++ A +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 83 PS-PVIDGRRANCNLA 97
+ +DGR N A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 5/78 (6%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPE- 74
N T +K+FVGGL+ T E ++ F FG+I++AVV+ D+ +G S+G+GFVT+ E
Sbjct: 30 NLSLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEV 89
Query: 75 --SAMRACQNPSPVIDGR 90
+AM+A QN +DGR
Sbjct: 90 ANNAMQAMQNKE--LDGR 105
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
KLFVGG+A ET E +++YF ++G +LEAVV +K TG+ +G+GFV F + ++A ++
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 83 PSPV----IDGRRA 92
+ +D R+A
Sbjct: 67 THFILGKPVDVRKA 80
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 4 QRQTQMMFGG----GYNNDTTFTK-LFVGGLAWETQRETMRRYFEQFGEILEAVVITDKN 58
+R+ Q M GG N T+ TK +FVGGL+ T E + YFE+FG + VV+ D
Sbjct: 97 ERKVQQMNGGLREMSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGV 156
Query: 59 TGRSKGYGFVTFKDPESAMRACQNPSPVIDGRRANCNLASLGANKNPPPTLHNGAGRFRP 118
T R +G+GFVT+ +S Q+ + +R A P + + G
Sbjct: 157 TNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAI------PKEGIQSNNGN--- 207
Query: 119 QPAVVASPAYHGSSSSTFFYQPTRQ-----YTFPYSAYGYSGYSQETMYPTSY 166
AV P+Y SS Y P + FP +GY Q YP Y
Sbjct: 208 --AVNIPPSY--SSFQATPYVPEQNGYGMVLQFPPPVFGYHHNVQAVQYPYGY 256
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain
| chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
+ F+GGLAW T +R FE++G ++EA V+ DK +GRS+G+GF+TF D + AM
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITF-DEKKAM 61
>AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:11695350-11696563 REVERSE LENGTH=116
Length = 116
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 24 LFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRA-CQN 82
LFV G+++ + ET+ + F Q+G++L+ VI DK R KG+ +VTF E A +A +
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 83 PSPVIDGRRANCNLASLGANKNPPPTLHNGAG 114
+ ++DGR + + A NPP T N AG
Sbjct: 83 NAQLVDGRVVILD-TTKAAKHNPPDTKPNHAG 113
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K+F+GGL +T ++F ++GEI ++V++ D++TG+ +G+GF+TF DP + ++
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 83 PSPVIDGRRANC 94
+ VI+G++
Sbjct: 80 -THVINGKQVEI 90
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 12 GGGYNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK 71
GG + D K+FVGG+ + ++ +F ++G ++E VI D T RS+G+GFV F
Sbjct: 99 GGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIF- 157
Query: 72 DPESAMRACQNPSPVID 88
D E + + +ID
Sbjct: 158 DSEEVVDELLSKGNMID 174
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K+F+GGL +T ++F ++GEI ++V++ D++TG+ +G+GF+TF DP + ++
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 83 PSPVIDGRRANC 94
+ VI+G++
Sbjct: 80 -THVINGKQVEI 90
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 12 GGGYNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK 71
GG + D K+FVGG+ + ++ +F ++G ++E VI D T RS+G+GFV F
Sbjct: 99 GGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIF- 157
Query: 72 DPESAMRACQNPSPVIDGRRANCNLASLG 100
D E + + +ID +L G
Sbjct: 158 DSEEVVDELLSKGNMIDMADTQVSLYKWG 186
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 12 GGGYNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFV--- 68
G ++ ++ KLFVG + E +R YFEQ G +LE +I DK TG+ +G FV
Sbjct: 110 GTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYA 169
Query: 69 TFKDPESAMRACQN 82
T KD + A+RA N
Sbjct: 170 TSKDADRAIRALHN 183
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 12 GGGYNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFV--- 68
G ++ ++ KLFVG + E +R YFEQ G +LE +I DK TG+ +G FV
Sbjct: 35 GTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYA 94
Query: 69 TFKDPESAMRACQN 82
T KD + A+RA N
Sbjct: 95 TSKDADRAIRALHN 108
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 12 GGGYNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFV--- 68
G ++ ++ KLFVG + E +R YFEQ G +LE +I DK TG+ +G FV
Sbjct: 110 GTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYA 169
Query: 69 TFKDPESAMRACQN 82
T KD + A+RA N
Sbjct: 170 TSKDADRAIRALHN 183
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 38/51 (74%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 72
+++FVGGL+ E + R F +FG+IL+ ++ +++TGRS+G+GF+TF D
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFAD 57
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRA 79
KLF+GGL+W ++++ F FGE+ E + DK +GRS+G+GFV F + A+ A
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSA 98
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 41/57 (71%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRA 79
+LFV GL+ T E ++ F FG++++A VITD+++GRSKG+GFVT+ E A +A
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKA 91
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 12 GGGYNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK 71
GGG + + K+FVGGLA ET ++F ++GEI ++V++ D+ TG+ +G+GFVT+
Sbjct: 35 GGGVD---SAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYA 91
Query: 72 DPESAMRACQNPSPVI 87
D + Q+ +I
Sbjct: 92 DSSVVDKVIQDNHIII 107
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK 71
+ND K+FVGG+ + + +F QFGE+ E ++ D +TGRS+G+GFVT++
Sbjct: 124 SNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYE 179
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
KL V G+ W+ + ++ Y +FG++ + +V+ D++TGRS+G+G+VTF E A A +
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK 62
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
KL V G+ W+ + ++ Y +FG++ + +V+ D++TGRS+G+G+VTF E A A +
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK 62
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
+++F+GGL + E +R E+ GEI E ++ D+++G SKGY FV FK + A +A +
Sbjct: 96 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 155
Query: 82 N-PSPVIDGRRANCNLAS 98
S G+ C+L+
Sbjct: 156 ELHSKEFKGKTIRCSLSE 173
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
+++F+GGL + E +R E+ GEI E ++ D+++G SKGY FV FK + A +A +
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 82 N-PSPVIDGRRANCNLAS 98
S G+ C+L+
Sbjct: 176 ELHSKEFKGKTIRCSLSE 193
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
+++F+GGL + E +R E+ GEI E ++ D+++G SKGY FV FK + A +A +
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 82 N-PSPVIDGRRANCNLAS 98
S G+ C+L+
Sbjct: 176 ELHSKEFKGKTIRCSLSE 193
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K+FVGGLA ++YF QFG I + VV+ D T R +G+GF+++ E+ + Q
Sbjct: 47 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 106
Query: 83 PSPVIDGRRANCNLA 97
++G+ LA
Sbjct: 107 TFHELNGKMVEVKLA 121
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
TKL+V GL++ T +T+R FEQFG ++ ++ DK R KG+ F+ ++ E AM+A Q
Sbjct: 77 TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136
Query: 82 NP-SPVIDGR 90
+DGR
Sbjct: 137 GMHGKFLDGR 146
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
+++F+GGL + E +R E+ GEI E ++ D+++G SKGY FV FK + A +A +
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 40/58 (68%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRA 79
+KLF+GGL++ T + + F + G+++EA ++ D+ + RSKG+GFVTF + A +A
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91
>AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331739-7333749 FORWARD LENGTH=374
Length = 374
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
KLF+ GL++ T +T+R FE FGE++E +I DK + RSKGY F+ + E+A A +
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 83 PSPVIDGRRANCNLASLGANKNPP 106
++G+ N + + K P
Sbjct: 343 ----MNGKIINGWMIVVDVAKTKP 362
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 42/67 (62%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
N+ +++FVGGL+W+ + F+++G+I E ++ ++TGR +G+GF+TF D
Sbjct: 6 NDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRG 65
Query: 76 AMRACQN 82
A A ++
Sbjct: 66 ADDAIKH 72
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 42/67 (62%)
Query: 16 NNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
N+ +++FVGGL+W+ + F+++G+I E ++ ++TGR +G+GF+TF D
Sbjct: 6 NDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRG 65
Query: 76 AMRACQN 82
A A ++
Sbjct: 66 ADDAIKH 72
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 13/89 (14%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRAC-- 80
+++VG L W+ + + F + G+++EA V+ D+ TGRS+G+GFVT D + A
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 81 ---QNPSPVIDGRRANCNLASLGANKNPP 106
QN ++GR N+ A + PP
Sbjct: 305 LDGQN----LEGRAIRVNV----AEERPP 325
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 17 NDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESA 76
N T FT ++V LA T + ++ F ++G+I AVV+ D G+SKG+GFV F++ + A
Sbjct: 210 NKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDA 268
Query: 77 MRACQN 82
RA ++
Sbjct: 269 ARAVES 274
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMR 78
T LFV GL+ T E +R F QFGE+ +A V+TD+ +G SKG+GFV + E + +
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAK 112
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
+L+VG L+W + F + G+++EA VI D+++GRSKG+GFVT + +A
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 82 NPSPV-IDGRRANCNLA 97
+ + +DGR+ + A
Sbjct: 317 SLNGADLDGRQIRVSEA 333
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
+L+VG L+W + F + G+++EA VI D+++GRSKG+GFVT + +A
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 82 NPSPV-IDGRRANCNLA 97
+ + +DGR+ + A
Sbjct: 317 SLNGADLDGRQIRVSEA 333
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
+L+VG L+W + F + G+++EA VI D+++GRSKG+GFVT + +A
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 82 NPSPV-IDGRRANCNLA 97
+ + +DGR+ + A
Sbjct: 317 SLNGADLDGRQIRVSEA 333
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPESAMRA 79
KLFVG L+W E++ F + G+++ A V+ D +TGRS+GYGFV + + E+A+ +
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 80 CQNPSPVIDGRRANCNLA 97
++GR NLA
Sbjct: 238 LDGFE--LEGRAIRVNLA 253
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 24 LFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN- 82
+FVG + ++ E +R + G ++ ++TD+ TG+ KGYGF +KD E+A+ A +N
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 83 PSPVIDGRRANCNLA 97
S I+GR+ + A
Sbjct: 71 QSYEINGRQLRVDFA 85
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
+L+VG L+W + F + G+++EA VI D+++GRSKG+GFVT + +A
Sbjct: 278 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 337
Query: 82 NPSPV-IDGRRANCNLA 97
+ + +DGR+ + A
Sbjct: 338 SLNGADLDGRQIRVSEA 354
>AT3G13570.1 | Symbols: SCL30A, At-SCL30A | SC35-like splicing
factor 30A | chr3:4429564-4431602 REVERSE LENGTH=262
Length = 262
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 11 FGGGYNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 70
FGG ++D T L V L + ++E +RR FEQFG + + + D TG +G+GF+ F
Sbjct: 27 FGGSRDSDLP-TSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQF 85
Query: 71 KDPESAMRA 79
DP A A
Sbjct: 86 MDPADAAEA 94
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 24 LFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQNP 83
LFV L+ T +++R+ F FG+I EA +I D T R KG+GF+TF + A +A ++
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 84 S-PVIDGR 90
++DGR
Sbjct: 69 DGKIVDGR 76
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
+++VG L+W + F + G+++EA VI D+++GRSKG+GFVT+ + A +
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 82 NPSPV-IDGRRANCNLA 97
+ +DGR+ + A
Sbjct: 264 SLDGADLDGRQIRVSEA 280
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
KLFVG L + + + FE G + VI DK TGRS+G+GFVT A Q
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 83 PSP-VIDGRRANCNLASLGANKNPPPTLHNGAGR 115
+ +DGR N PPP +G R
Sbjct: 152 FNGYELDGRPLRVNAGP------PPPKREDGFSR 179
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 24 LFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQNP 83
+FVG L+ E T+ + F F +A V+ D+ TGRS+G+GFV+F++ + A A
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 84 S-PVIDGRRANCNLASLGA 101
+ + R+ CN A+ GA
Sbjct: 206 NGKWLSSRQIRCNWATKGA 224
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 17 NDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESA 76
N++ FT ++VG LA E + + RYF G A VI + R KG+GFV + A
Sbjct: 260 NNSQFTTVYVGNLAPEVTQLDLHRYFHALG----AGVIEEVRVQRDKGFGFVRYNTHPEA 315
Query: 77 MRACQ--NPSPVIDGRRANCNLASLGANKNPPPTLHN 111
A Q N P + R+ C S G PP T N
Sbjct: 316 ALAIQMGNTQPYLFNRQIKC---SWGNKPTPPGTASN 349
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESA 76
TKL++GGL+ T +++ F F + EA V+T+K TGRS+GYGFV F +SA
Sbjct: 31 TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSA 85
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 52.8 bits (125), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
T+++VG L+ T + +R F +G +++A+V+ D+ T RS+G+GFVT+ A A
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 82 N-PSPVIDGRRANCNLASLG 100
++GRR + L +G
Sbjct: 63 GMDGKELNGRRVSVKLFGIG 82
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
K++ G L W + ++ F +L A VI ++NTGRS+G+GF++F+ E+ A
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 83 PSPV-IDGRRANCNLASLGANKNP---PPTLHNG 112
+ V ++GR NLAS + P PP++ G
Sbjct: 280 MNGVEVEGRALRLNLAS--EREKPTVSPPSVEEG 311
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 18 DTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 77
D F +++VG L W+ + R F + G++++A V++D+ TGRS+G+GFV +
Sbjct: 204 DAAF-RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVN 262
Query: 78 RAC-----QNPSPVIDGRRANCNLA 97
A QN ++GR N+A
Sbjct: 263 VAIAALDGQN----LEGRAIKVNVA 283
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
KLFVG L ++ + + FEQ G + + VI +++T +S+G+GFVT E A +A +
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 83 -PSPVIDGRRANCNLAS-LGANKNPPPTLHNGAGRF 116
S ++GRR N A+ G+ P +++ A R
Sbjct: 174 FNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRI 209
>AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6744029-6746133 FORWARD LENGTH=337
Length = 337
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 23/138 (16%)
Query: 24 LFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN- 82
++VGGL ++ E +RR F +G +L ++ D++ R K YGFVTF + SA A ++
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSADDAIEDM 67
Query: 83 PSPVIDGRRANCN-LASLGANKNPPPTLHNGAGRFRPQPAVVASPAYHGSSSSTFFYQPT 141
I GR N + + G NP P GR +P HG + P
Sbjct: 68 DGKSIGGRAVRVNDVTTRGGRMNPGP------GRLQP----------HGG----WDRSPD 107
Query: 142 RQYTFPYSAYGYSGYSQE 159
R+ Y YS S+E
Sbjct: 108 RRSDGNYERDRYSDRSRE 125
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 24 LFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQNP 83
+FVG L+ E + F F +A V+ D+ TGRS+G+GFV+F++ + A A
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
Query: 84 S-PVIDGRRANCNLASLGA 101
+ + R+ CN A+ GA
Sbjct: 210 NGKWVSSRQIRCNWATKGA 228
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 24 LFVGGLAWETQRETMRRYFEQ-FGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 82
+FVG LA E + F+ +G + A V+ D+ TGRSKGYGFV F D MRA
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 83 PSPVIDGRRANCNLASLG--ANKNPPP 107
++G+ + +G ANKN P
Sbjct: 216 ----MNGQYCSTRPMRIGPAANKNALP 238
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
T L++G L + + + F FGEI+ A VI D+ TG SKGYGFV + D + A A Q
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
T L++G L + + + F FGEI+ A VI D+ TG SKGYGFV + D + A A Q
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%)
Query: 22 TKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQ 81
T L++G L + + + F FGEI+ A VI D+ TG SKGYGFV + D + A A Q
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 13 GGYNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 72
G ++ FT ++V L ++R F +FGEI AVV+ D G+S+ +GFV F+
Sbjct: 110 GQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEK 168
Query: 73 PESAMRACQNPSPVI 87
E+A+ A + + V+
Sbjct: 169 AEAAVTAIEKMNGVV 183
>AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-like
splicing factor 33 | chr1:20630676-20632695 FORWARD
LENGTH=287
Length = 287
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 13 GGYNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 72
GG + D T L V L + ++E +R+ FEQFG + + + D TG +G+GFV F D
Sbjct: 28 GGRSRDLP-TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMD 86
Query: 73 PESAMRA 79
P A A
Sbjct: 87 PADAADA 93
>AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-like
splicing factor 33 | chr1:20630676-20632567 FORWARD
LENGTH=220
Length = 220
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 13 GGYNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 72
GG + D T L V L + ++E +R+ FEQFG + + + D TG +G+GFV F D
Sbjct: 28 GGRSRDLP-TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMD 86
Query: 73 PESAMRA 79
P A A
Sbjct: 87 PADAADA 93
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 33/48 (68%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 70
K++VG L W TQ + +R +F +FG I+ V+ D+ TGR++ + F++F
Sbjct: 214 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSF 261
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 33/48 (68%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 70
K++VG L W TQ + +R +F +FG I+ V+ D+ TGR++ + F++F
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSF 260
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 11 FGGGYNNDTT-FTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVT 69
+ G DT+ +FVG L+ E + F + +A V+ D+ TGRS+G+GFV+
Sbjct: 127 YASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVS 186
Query: 70 FKDPESAMRACQNPS-PVIDGRRANCNLASLGA 101
F++ + A A + + R+ CN A+ GA
Sbjct: 187 FRNQQDAQTAIDEITGKWLGSRQIRCNWATKGA 219
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 11 FGGGYNNDTT-FTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVT 69
+ G DT+ +FVG L+ E + F + +A V+ D+ TGRS+G+GFV+
Sbjct: 127 YASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVS 186
Query: 70 FKDPESAMRACQNPS-PVIDGRRANCNLASLGA 101
F++ + A A + + R+ CN A+ GA
Sbjct: 187 FRNQQDAQTAIDEITGKWLGSRQIRCNWATKGA 219
>AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9270114-9270597 REVERSE LENGTH=117
Length = 117
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 36/51 (70%)
Query: 25 FVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPES 75
FV GL +T + + F +FG ++++ +I D++TG+S+ +GFVTF++ +S
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKS 60
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 23 KLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRA 79
+LFV GL + T E + +F +FG+I E ++ DK+T +G FV + PESA A
Sbjct: 228 RLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMA 284