Miyakogusa Predicted Gene

Lj3g3v2401880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2401880.1 Non Chatacterized Hit- tr|D8RJG5|D8RJG5_SELML
Putative uncharacterized protein OS=Selaginella moelle,32.69,1e-17,no
description,Armadillo-like helical; RIX1,NULL,CUFF.43989.1
         (185 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G30240.2 | Symbols:  | unknown protein; Has 169 Blast hits to...   173   5e-44
AT1G30240.1 | Symbols:  | FUNCTIONS IN: binding; INVOLVED IN: bi...   173   5e-44

>AT1G30240.2 | Symbols:  | unknown protein; Has 169 Blast hits to
           168 proteins in 75 species: Archae - 0; Bacteria - 0;
           Metazoa - 49; Fungi - 68; Plants - 46; Viruses - 0;
           Other Eukaryotes - 6 (source: NCBI BLink). |
           chr1:10641241-10645838 REVERSE LENGTH=827
          Length = 827

 Score =  173 bits (439), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 92/187 (49%), Positives = 125/187 (66%), Gaps = 3/187 (1%)

Query: 1   MAAFDHFGGMDDVELKPRLLRTLISDHLRDKKRPSFNPSALSKVISLIRTHSLLSESFTE 60
           MA+F+ F  M D+ LKP++LR L+S+++ ++K+P  N  +LSKV+S I TH LLSES   
Sbjct: 1   MASFERFDDMCDLRLKPKILRNLLSEYVPNEKQPLTNFLSLSKVVSTISTHKLLSESPPA 60

Query: 61  SMAPELVEEWKSAVTSWVERIETLLESSTLDKCWAGISLLGVTCELCSDDRFVDSYSSWF 120
           S+  +L  + KSAV  WV R+  L+ S   DK W GI L+GVTC+ CS DRF  SYS WF
Sbjct: 61  SIDQKLHAKSKSAVDDWVARLSALISSDMPDKSWVGICLIGVTCQECSSDRFFKSYSVWF 120

Query: 121 DKLKKKLQPPADSDLVRVACCASISDLFARLSGFPKLKKDCV---VKVVQPVLRMLQDDN 177
           + L   L+ PA S +VRVA C SISDL  RLS F   KKD V    K++ P++++L +D+
Sbjct: 121 NSLLSHLKNPASSRIVRVASCTSISDLLTRLSRFSNTKKDAVSHASKLILPIIKLLDEDS 180

Query: 178 SEAILEA 184
           SEA+LE 
Sbjct: 181 SEALLEG 187


>AT1G30240.1 | Symbols:  | FUNCTIONS IN: binding; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 21 plant
           structures; EXPRESSED DURING: 13 growth stages; CONTAINS
           InterPro DOMAIN/s: Armadillo-type fold
           (InterPro:IPR016024); Has 165 Blast hits to 164 proteins
           in 73 species: Archae - 0; Bacteria - 0; Metazoa - 47;
           Fungi - 68; Plants - 46; Viruses - 0; Other Eukaryotes -
           4 (source: NCBI BLink). | chr1:10641241-10645838 REVERSE
           LENGTH=825
          Length = 825

 Score =  173 bits (439), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 92/187 (49%), Positives = 125/187 (66%), Gaps = 3/187 (1%)

Query: 1   MAAFDHFGGMDDVELKPRLLRTLISDHLRDKKRPSFNPSALSKVISLIRTHSLLSESFTE 60
           MA+F+ F  M D+ LKP++LR L+S+++ ++K+P  N  +LSKV+S I TH LLSES   
Sbjct: 1   MASFERFDDMCDLRLKPKILRNLLSEYVPNEKQPLTNFLSLSKVVSTISTHKLLSESPPA 60

Query: 61  SMAPELVEEWKSAVTSWVERIETLLESSTLDKCWAGISLLGVTCELCSDDRFVDSYSSWF 120
           S+  +L  + KSAV  WV R+  L+ S   DK W GI L+GVTC+ CS DRF  SYS WF
Sbjct: 61  SIDQKLHAKSKSAVDDWVARLSALISSDMPDKSWVGICLIGVTCQECSSDRFFKSYSVWF 120

Query: 121 DKLKKKLQPPADSDLVRVACCASISDLFARLSGFPKLKKDCV---VKVVQPVLRMLQDDN 177
           + L   L+ PA S +VRVA C SISDL  RLS F   KKD V    K++ P++++L +D+
Sbjct: 121 NSLLSHLKNPASSRIVRVASCTSISDLLTRLSRFSNTKKDAVSHASKLILPIIKLLDEDS 180

Query: 178 SEAILEA 184
           SEA+LE 
Sbjct: 181 SEALLEG 187