Miyakogusa Predicted Gene

Lj3g3v2400840.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2400840.1 tr|A9T9H6|A9T9H6_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_168781,26.19,1e-17,seg,NULL,CUFF.43985.1
         (422 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G30240.2 | Symbols:  | unknown protein; Has 169 Blast hits to...   102   4e-22
AT1G30240.1 | Symbols:  | FUNCTIONS IN: binding; INVOLVED IN: bi...    97   2e-20

>AT1G30240.2 | Symbols:  | unknown protein; Has 169 Blast hits to
           168 proteins in 75 species: Archae - 0; Bacteria - 0;
           Metazoa - 49; Fungi - 68; Plants - 46; Viruses - 0;
           Other Eukaryotes - 6 (source: NCBI BLink). |
           chr1:10641241-10645838 REVERSE LENGTH=827
          Length = 827

 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 97/211 (45%), Gaps = 6/211 (2%)

Query: 1   MGVGIAMYLEQEVVNNAIADLSTIKNKNSVTLNGSNSDVSVRVPPPTNHRKRKHSSNAGS 60
           MG+G+AM L QEVV NA  DL     +     +  N  ++         +KRKHS     
Sbjct: 436 MGIGMAMQLAQEVVINASVDLDQTSLEAFDVASSKNPSLTNGALLQACSKKRKHSG---- 491

Query: 61  LQEHVESVGLGVKDPKNRPLTPISLRIXXXXXXXXXXXXXXXXRSERWRQKVDSLLMDIA 120
                E+    ++ P N   +PISL+I                 S+ WR+ VD+LL+  A
Sbjct: 492 --VEAENSVFELRIPHNHLRSPISLKIASLEALETLLTIGGALGSDSWRESVDNLLLTTA 549

Query: 121 NDSFKEGPSSEEISVLQQKDPXXXXXXXXXXXXXXXXXXXXXXXXVRPPYISQGLGLFRR 180
            ++ +   ++ E                                 VRP ++++GL LFR 
Sbjct: 550 TNACEGRWANAETYHCLPNKSTTDLVEFQLAALRAFSASLVSPSRVRPAFLAEGLELFRT 609

Query: 181 GRQQTGTKLAEFCAHALLTLEVLIHPRALPL 211
           G+ Q G K+A FCAHAL++LEV+IHPRALPL
Sbjct: 610 GKLQAGMKVAGFCAHALMSLEVVIHPRALPL 640


>AT1G30240.1 | Symbols:  | FUNCTIONS IN: binding; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 21 plant
           structures; EXPRESSED DURING: 13 growth stages; CONTAINS
           InterPro DOMAIN/s: Armadillo-type fold
           (InterPro:IPR016024); Has 165 Blast hits to 164 proteins
           in 73 species: Archae - 0; Bacteria - 0; Metazoa - 47;
           Fungi - 68; Plants - 46; Viruses - 0; Other Eukaryotes -
           4 (source: NCBI BLink). | chr1:10641241-10645838 REVERSE
           LENGTH=825
          Length = 825

 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 95/209 (45%), Gaps = 6/209 (2%)

Query: 3   VGIAMYLEQEVVNNAIADLSTIKNKNSVTLNGSNSDVSVRVPPPTNHRKRKHSSNAGSLQ 62
           +G+AM L QEVV NA  DL     +     +  N  ++         +KRKHS       
Sbjct: 436 MGMAMQLAQEVVINASVDLDQTSLEAFDVASSKNPSLTNGALLQACSKKRKHSG------ 489

Query: 63  EHVESVGLGVKDPKNRPLTPISLRIXXXXXXXXXXXXXXXXRSERWRQKVDSLLMDIAND 122
              E+    ++ P N   +PISL+I                 S+ WR+ VD+LL+  A +
Sbjct: 490 VEAENSVFELRIPHNHLRSPISLKIASLEALETLLTIGGALGSDSWRESVDNLLLTTATN 549

Query: 123 SFKEGPSSEEISVLQQKDPXXXXXXXXXXXXXXXXXXXXXXXXVRPPYISQGLGLFRRGR 182
           + +   ++ E                                 VRP ++++GL LFR G+
Sbjct: 550 ACEGRWANAETYHCLPNKSTTDLVEFQLAALRAFSASLVSPSRVRPAFLAEGLELFRTGK 609

Query: 183 QQTGTKLAEFCAHALLTLEVLIHPRALPL 211
            Q G K+A FCAHAL++LEV+IHPRALPL
Sbjct: 610 LQAGMKVAGFCAHALMSLEVVIHPRALPL 638