Miyakogusa Predicted Gene

Lj3g3v2389770.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2389770.1 Non Chatacterized Hit- tr|A8MR59|A8MR59_ARATH
Uncharacterized protein OS=Arabidopsis thaliana
GN=At2,72.13,2e-18,DUF2996,Protein of unknown function DUF2996;
seg,NULL,CUFF.43957.1
         (213 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G04039.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   178   2e-45
AT2G04039.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   176   9e-45
AT2G04039.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    96   2e-20

>AT2G04039.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13
           growth stages; CONTAINS InterPro DOMAIN/s: Protein of
           unknown function DUF2996 (InterPro:IPR021374); Has 159
           Blast hits to 159 proteins in 52 species: Archae - 0;
           Bacteria - 76; Metazoa - 0; Fungi - 0; Plants - 38;
           Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
           | chr2:1333464-1334438 FORWARD LENGTH=199
          Length = 199

 Score =  178 bits (452), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 84/108 (77%), Positives = 93/108 (86%)

Query: 105 LPQMMEEDVIPSLKEIFEAQEDLSDIELVFQDNKLEGSFLKKGNPYLFWAFFPTGNLTGP 164
           L QMMEEDVIP L+ I E+Q+D+SDI+L FQD+KLEG FLKK  PY FWAFFPTGNLTG 
Sbjct: 91  LRQMMEEDVIPPLQAILESQDDISDIDLSFQDDKLEGFFLKKSIPYSFWAFFPTGNLTGA 150

Query: 165 KGFSISSYNSGASTVEPFLVDEKKITAKHIVFWVEKRLAAQGIIPVWK 212
           KGFSISS+ SG STVEPFLVDE+K TA H+VFWVEKRLAAQGIIPVW 
Sbjct: 151 KGFSISSHGSGPSTVEPFLVDERKPTANHVVFWVEKRLAAQGIIPVWN 198


>AT2G04039.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13
           growth stages; CONTAINS InterPro DOMAIN/s: Protein of
           unknown function DUF2996 (InterPro:IPR021374); Has 157
           Blast hits to 157 proteins in 52 species: Archae - 0;
           Bacteria - 76; Metazoa - 0; Fungi - 0; Plants - 37;
           Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
           | chr2:1333714-1334438 FORWARD LENGTH=165
          Length = 165

 Score =  176 bits (446), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 84/108 (77%), Positives = 93/108 (86%)

Query: 105 LPQMMEEDVIPSLKEIFEAQEDLSDIELVFQDNKLEGSFLKKGNPYLFWAFFPTGNLTGP 164
           L QMMEEDVIP L+ I E+Q+D+SDI+L FQD+KLEG FLKK  PY FWAFFPTGNLTG 
Sbjct: 57  LRQMMEEDVIPPLQAILESQDDISDIDLSFQDDKLEGFFLKKSIPYSFWAFFPTGNLTGA 116

Query: 165 KGFSISSYNSGASTVEPFLVDEKKITAKHIVFWVEKRLAAQGIIPVWK 212
           KGFSISS+ SG STVEPFLVDE+K TA H+VFWVEKRLAAQGIIPVW 
Sbjct: 117 KGFSISSHGSGPSTVEPFLVDERKPTANHVVFWVEKRLAAQGIIPVWN 164


>AT2G04039.3 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13
           growth stages; CONTAINS InterPro DOMAIN/s: Protein of
           unknown function DUF2996 (InterPro:IPR021374); Has 38
           Blast hits to 38 proteins in 13 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr2:1333464-1334457 FORWARD LENGTH=206
          Length = 206

 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 50/59 (84%)

Query: 105 LPQMMEEDVIPSLKEIFEAQEDLSDIELVFQDNKLEGSFLKKGNPYLFWAFFPTGNLTG 163
           L QMMEEDVIP L+ I E+Q+D+SDI+L FQD+KLEG FLKK  PY FWAFFPTGNLTG
Sbjct: 91  LRQMMEEDVIPPLQAILESQDDISDIDLSFQDDKLEGFFLKKSIPYSFWAFFPTGNLTG 149