Miyakogusa Predicted Gene

Lj3g3v2388620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2388620.1 tr|A7SKU7|A7SKU7_NEMVE Predicted protein
(Fragment) OS=Nematostella vectensis GN=v1g122036 PE=4
SV=1,37.84,1e-18,dCMP_cyt_deam_1,CMP/dCMP deaminase, zinc-binding;
seg,NULL; no description,NULL; Cytidine
deaminase-,NODE_50471_length_1620_cov_20.938272.path2.1
         (270 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24670.1 | Symbols:  | Cytidine/deoxycytidylate deaminase fam...   227   7e-60
AT5G24670.2 | Symbols:  | Cytidine/deoxycytidylate deaminase fam...   226   9e-60

>AT5G24670.1 | Symbols:  | Cytidine/deoxycytidylate deaminase family
           protein | chr5:8448880-8451046 FORWARD LENGTH=400
          Length = 400

 Score =  227 bits (578), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 124/261 (47%), Positives = 162/261 (62%), Gaps = 20/261 (7%)

Query: 1   MQSAVELATSDGL-VVNAAVIVDPSAKQIISSARDQVFAWNTCKDDSFSRKPELLSSHPI 59
           M+  +++A S    +VNAAVIVDPS ++II+S  DQV+A +  +D + +           
Sbjct: 156 MRVVIDMAVSGHTPLVNAAVIVDPSVRRIIASETDQVYASSAPRDMTSAE---------- 205

Query: 60  SNRFDPDKPLYSNSSCNQLKQRDTGVACLYPWQWTEXXXXXXXXXDWHPLRHAAIVAIES 119
           +  F+    +  N +  +     + ++CL PWQW+           WHPLRHA++VAIES
Sbjct: 206 TRPFEETGEICLNDTLEKQNGSLSALSCLNPWQWSLQPHDTENCSQWHPLRHASMVAIES 265

Query: 120 SAARDRCLFPSEGNSEEKYLEMDHENPSCTSFPAKRQKTVCATVEDNDKLNGHNETSTQL 179
           S+ARDR LFP+      K  + DH  PS T  PAK+QKT   + +  D  N   E + + 
Sbjct: 266 SSARDRNLFPNPS----KIFDQDHVPPSNTDSPAKKQKT---SSQSPDVQNDSREETVRD 318

Query: 180 SA--RPYLCTGYDIYLAWEPCIMCAMALVHQRIRRIFYRFPNPNAGALGSVHRLQGEKSL 237
            +  RPYLCTGYDI+L  EPC MCAMALVHQRI+RIFY FPN  AG LGSVHRLQGEKSL
Sbjct: 319 PSMERPYLCTGYDIFLLLEPCTMCAMALVHQRIKRIFYAFPNTTAGGLGSVHRLQGEKSL 378

Query: 238 NHHYAVFRVMLPEQTLHKCNT 258
           NHHYAVFRV+LP+  L +  T
Sbjct: 379 NHHYAVFRVLLPDDALRQMTT 399


>AT5G24670.2 | Symbols:  | Cytidine/deoxycytidylate deaminase family
           protein | chr5:8448880-8451046 FORWARD LENGTH=404
          Length = 404

 Score =  226 bits (577), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 124/261 (47%), Positives = 162/261 (62%), Gaps = 20/261 (7%)

Query: 1   MQSAVELATSDGL-VVNAAVIVDPSAKQIISSARDQVFAWNTCKDDSFSRKPELLSSHPI 59
           M+  +++A S    +VNAAVIVDPS ++II+S  DQV+A +  +D + +           
Sbjct: 160 MRVVIDMAVSGHTPLVNAAVIVDPSVRRIIASETDQVYASSAPRDMTSAE---------- 209

Query: 60  SNRFDPDKPLYSNSSCNQLKQRDTGVACLYPWQWTEXXXXXXXXXDWHPLRHAAIVAIES 119
           +  F+    +  N +  +     + ++CL PWQW+           WHPLRHA++VAIES
Sbjct: 210 TRPFEETGEICLNDTLEKQNGSLSALSCLNPWQWSLQPHDTENCSQWHPLRHASMVAIES 269

Query: 120 SAARDRCLFPSEGNSEEKYLEMDHENPSCTSFPAKRQKTVCATVEDNDKLNGHNETSTQL 179
           S+ARDR LFP+      K  + DH  PS T  PAK+QKT   + +  D  N   E + + 
Sbjct: 270 SSARDRNLFPNPS----KIFDQDHVPPSNTDSPAKKQKT---SSQSPDVQNDSREETVRD 322

Query: 180 SA--RPYLCTGYDIYLAWEPCIMCAMALVHQRIRRIFYRFPNPNAGALGSVHRLQGEKSL 237
            +  RPYLCTGYDI+L  EPC MCAMALVHQRI+RIFY FPN  AG LGSVHRLQGEKSL
Sbjct: 323 PSMERPYLCTGYDIFLLLEPCTMCAMALVHQRIKRIFYAFPNTTAGGLGSVHRLQGEKSL 382

Query: 238 NHHYAVFRVMLPEQTLHKCNT 258
           NHHYAVFRV+LP+  L +  T
Sbjct: 383 NHHYAVFRVLLPDDALRQMTT 403