Miyakogusa Predicted Gene

Lj3g3v2387580.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2387580.1 Non Chatacterized Hit- tr|J3L5J0|J3L5J0_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB01G4,52.13,4e-19,
,CUFF.43951.1
         (120 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G08330.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   103   3e-23
AT4G08330.2 | Symbols:  | unknown protein. | chr4:5255384-525652...    82   8e-17

>AT4G08330.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT2G17705.1); Has 98 Blast
           hits to 98 proteins in 13 species: Archae - 0; Bacteria
           - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0;
           Other Eukaryotes - 0 (source: NCBI BLink). |
           chr4:5255384-5256525 REVERSE LENGTH=164
          Length = 164

 Score =  103 bits (256), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/123 (49%), Positives = 77/123 (62%), Gaps = 10/123 (8%)

Query: 6   VSYCCGSCGYPLNLTSSNRITSNIASEYKRSVKKGSISFASVDLSRFTQVDEISCFP--- 62
           V+Y CGSCGY LNL+S+NRITS I S+Y +S+K G ISF ++D  RF+QVDE  C P   
Sbjct: 36  VNYSCGSCGYELNLSSTNRITSTIGSKYGKSMKSGIISFFNIDEGRFSQVDEFQCMPHFS 95

Query: 63  -VSW-FNSSKTKLLCRKCGVHIGYGYCRESP--ALCGLEPSVSSSSQG---KFIIKIRSL 115
             SW     +TKLLCRKC  +IG     ++P  AL       +S   G   K+ I+IRSL
Sbjct: 96  RYSWGLFRHRTKLLCRKCNNYIGNASQEKAPEYALVTQNSDPTSPRIGSVTKYDIRIRSL 155

Query: 116 QPS 118
           QPS
Sbjct: 156 QPS 158


>AT4G08330.2 | Symbols:  | unknown protein. | chr4:5255384-5256525
           REVERSE LENGTH=153
          Length = 153

 Score = 82.0 bits (201), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 67/112 (59%), Gaps = 10/112 (8%)

Query: 17  LNLTSSNRITSNIASEYKRSVKKGSISFASVDLSRFTQVDEISCFP----VSW-FNSSKT 71
           +N +S+NRITS I S+Y +S+K G ISF ++D  RF+QVDE  C P     SW     +T
Sbjct: 36  VNYSSTNRITSTIGSKYGKSMKSGIISFFNIDEGRFSQVDEFQCMPHFSRYSWGLFRHRT 95

Query: 72  KLLCRKCGVHIGYGYCRESP--ALCGLEPSVSSSSQG---KFIIKIRSLQPS 118
           KLLCRKC  +IG     ++P  AL       +S   G   K+ I+IRSLQPS
Sbjct: 96  KLLCRKCNNYIGNASQEKAPEYALVTQNSDPTSPRIGSVTKYDIRIRSLQPS 147