Miyakogusa Predicted Gene

Lj3g3v2385410.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2385410.1 tr|B9P7R2|B9P7R2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_793382 PE=4
SV=1,39.67,0.000000001,Chaperone J-domain,Heat shock protein DnaJ,
N-terminal; DNAJ_2,Heat shock protein DnaJ, N-terminal; ,CUFF.43944.1
         (165 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G13830.2 | Symbols: J20 | DNAJ-like 20 | chr4:8011518-8012577...    51   4e-07

>AT4G13830.2 | Symbols: J20 | DNAJ-like 20 | chr4:8011518-8012577
           FORWARD LENGTH=197
          Length = 197

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 38/178 (21%)

Query: 20  PHSSKQQRTFLVNFAISCR---GATKLKEETTHGN---------LYKVLSLKPGSAMDEI 67
           P SS Q  +     +   R    +T+++   TH +          Y +L +     + EI
Sbjct: 23  PISSLQPTSIPTTISYPTRTRFSSTRIQSRLTHDDPVKQSEDLSFYDLLGVTESVTLPEI 82

Query: 68  KRAYSH----------DPSMKEESTKMFVQLNEAYKTLSNPLLREQYDSELGFRSEMNIN 117
           K+AY             P   EE T  F+++ EAY+TLS+P  R  YD +L     M  +
Sbjct: 83  KQAYKQLARKYHPDVSPPDRVEEYTDRFIRVQEAYETLSDPRRRVLYDRDLS----MGFS 138

Query: 118 VSDEGLRSMWQEQVVHDMNMKTKS---------RRRMGQKGG---SWSSRMKTQNMEN 163
            S  G R    +Q V +   + K+         RRR  QK     SW++RM+ Q  E+
Sbjct: 139 FSFSGRRQNRYDQEVVEEKSEWKAKWQTQLSGLRRRSNQKDNNTMSWAARMRRQQQES 196