Miyakogusa Predicted Gene

Lj3g3v2364180.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2364180.1 Non Chatacterized Hit- tr|E1ZIF6|E1ZIF6_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,44.83,0.000000001,seg,NULL,CUFF.43936.1
         (247 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G05400.2 | Symbols:  | copper ion binding | chr4:2741256-2742...   221   2e-58
AT4G05400.1 | Symbols:  | copper ion binding | chr4:2741256-2742...   221   2e-58
AT4G21140.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   193   8e-50

>AT4G05400.2 | Symbols:  | copper ion binding | chr4:2741256-2742008
           FORWARD LENGTH=250
          Length = 250

 Score =  221 bits (564), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 125/255 (49%), Positives = 162/255 (63%), Gaps = 13/255 (5%)

Query: 1   MLRLAKLKPFLHSTQSPCSGQQLIQRCSVSGTXXXXXXXXXXX-LKRSRITTKKXX---- 55
           M+R+ K K  + S         LIQRCS SGT            LKR++++ KK      
Sbjct: 1   MIRVTKPKAIIESLS-----YHLIQRCSASGTPKGKAKLKTGQPLKRNKLSIKKGGGGGG 55

Query: 56  ---XXXXXXXXXXXXXXXXXXXXXXXXNAPTPVRYLTPKQKKREAEREKMGLISKERQRE 112
                                      NAP PVRYLTP++ +REA+REK+GLISKE+QR+
Sbjct: 56  APVEGEEAVKGKGRISDEKQKLYEQCLNAPCPVRYLTPQEIEREAQREKLGLISKEKQRD 115

Query: 113 LDMMKKKVFNKYKVPEKPTIIGTPGLDYVTLGLVDVEKLPKYELTVEDGRRLAKEYGRVL 172
           +++ KK       V ++P  IGTPGLDY++LG+ + E+LPKY+LT EDG RLAKEY +VL
Sbjct: 116 MEIQKKGGAASMGVTDEPMRIGTPGLDYISLGIFEAEELPKYKLTEEDGERLAKEYSKVL 175

Query: 173 MRKSRARQAAETNLLRMKKEAIEALPPHLKEAALVPDLAPFPANRFMATLTPPIPGYIDK 232
           MR+ R R+AAET LL +KK AIEALP +LK+AAL PDL PFPANR MATLTPPI GY++K
Sbjct: 176 MREHRERRAAETALLNLKKSAIEALPENLKKAALEPDLTPFPANRGMATLTPPIEGYLEK 235

Query: 233 IREAANKISGREKIR 247
           + +AA K S +EK+R
Sbjct: 236 VMDAAKKSSSKEKLR 250


>AT4G05400.1 | Symbols:  | copper ion binding | chr4:2741256-2742008
           FORWARD LENGTH=250
          Length = 250

 Score =  221 bits (564), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 125/255 (49%), Positives = 162/255 (63%), Gaps = 13/255 (5%)

Query: 1   MLRLAKLKPFLHSTQSPCSGQQLIQRCSVSGTXXXXXXXXXXX-LKRSRITTKKXX---- 55
           M+R+ K K  + S         LIQRCS SGT            LKR++++ KK      
Sbjct: 1   MIRVTKPKAIIESLS-----YHLIQRCSASGTPKGKAKLKTGQPLKRNKLSIKKGGGGGG 55

Query: 56  ---XXXXXXXXXXXXXXXXXXXXXXXXNAPTPVRYLTPKQKKREAEREKMGLISKERQRE 112
                                      NAP PVRYLTP++ +REA+REK+GLISKE+QR+
Sbjct: 56  APVEGEEAVKGKGRISDEKQKLYEQCLNAPCPVRYLTPQEIEREAQREKLGLISKEKQRD 115

Query: 113 LDMMKKKVFNKYKVPEKPTIIGTPGLDYVTLGLVDVEKLPKYELTVEDGRRLAKEYGRVL 172
           +++ KK       V ++P  IGTPGLDY++LG+ + E+LPKY+LT EDG RLAKEY +VL
Sbjct: 116 MEIQKKGGAASMGVTDEPMRIGTPGLDYISLGIFEAEELPKYKLTEEDGERLAKEYSKVL 175

Query: 173 MRKSRARQAAETNLLRMKKEAIEALPPHLKEAALVPDLAPFPANRFMATLTPPIPGYIDK 232
           MR+ R R+AAET LL +KK AIEALP +LK+AAL PDL PFPANR MATLTPPI GY++K
Sbjct: 176 MREHRERRAAETALLNLKKSAIEALPENLKKAALEPDLTPFPANRGMATLTPPIEGYLEK 235

Query: 233 IREAANKISGREKIR 247
           + +AA K S +EK+R
Sbjct: 236 VMDAAKKSSSKEKLR 250


>AT4G21140.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: copper ion binding (TAIR:AT4G05400.2); Has 41 Blast
           hits to 41 proteins in 16 species: Archae - 0; Bacteria
           - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0;
           Other Eukaryotes - 1 (source: NCBI BLink). |
           chr4:11277491-11278222 REVERSE LENGTH=243
          Length = 243

 Score =  193 bits (491), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 119/249 (47%), Positives = 155/249 (62%), Gaps = 8/249 (3%)

Query: 1   MLRLAKLKPFLHSTQSPCSGQQLIQRCSVSGT-XXXXXXXXXXXLKRSRITTKKXXXXXX 59
           M+R A+ KP + S         L+Q+C  SGT            LKR+++T KK      
Sbjct: 1   MIRFARPKPIIDSVS-----YNLLQKCYASGTPKGKSKLKTGQSLKRNKLTIKKGGGNGG 55

Query: 60  XXXXXXXXXXXXXXXXXXXXNAPTPVRYLTPKQKKREAEREKMGLISKERQRELDMMKKK 119
                               NAP PVRYL PK+++REA REK+GLISK RQ+E+D  KK 
Sbjct: 56  GRGGDEVDKGKGRISDQCI-NAPCPVRYLRPKEREREARREKLGLISKARQKEIDFQKKG 114

Query: 120 VFNKYKVPEKPTIIGTPGLDYVTLGLVDVEKLPKYELTVEDGRRLAKEYGRVLMRKSRAR 179
                 V   P  IGTPGLDY++LG+   ++LPKY++TVEDG RLAKEY RVLMR+ RAR
Sbjct: 115 GSFTMGVTTAPMRIGTPGLDYISLGIFTEDELPKYKVTVEDGIRLAKEYSRVLMREHRAR 174

Query: 180 QAAETNLLRMKKEAIEALPPHLKEAALVPDLAPFPANRFMATLTPPIPGYIDKI-REAAN 238
           + AE +L++M+  A+EALP +LK+AALV DL PFP +R  ATLTPPI GY+++I   AA 
Sbjct: 175 RVAEISLMKMRNAAVEALPENLKKAALVRDLTPFPVSRGTATLTPPIEGYLERIMNAAAR 234

Query: 239 KISGREKIR 247
           K SG+EK+R
Sbjct: 235 KSSGKEKLR 243